mRNA_H-elongata_contig127834.2049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127834.2049.1
Unique NamemRNA_H-elongata_contig127834.2049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.000e-32
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQVFI 222
            + V V  +D+FL+L CDG+WD++SSQQ VSY+HRRLLKHRDVQRASRELCKTLGKM GSDNCSCV+VCLNQV +
Sbjct: 1142 RSVVVHPDDEFLVLACDGVWDLVSSQQVVSYVHRRLLKHRDVQRASRELCKTLGKMSGSDNCSCVIVCLNQVSV 1215          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.570e-29
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQVFI 222
            Q +S      FLIL  DG+WD++SSQQ VSY+HRRLLKHRDVQRASRELCKTLGKM GSDNCSCV+VCLNQV +
Sbjct: 2190 QLISKPETRSFLILAWDGVWDLVSSQQVVSYVHRRLLKHRDVQRASRELCKTLGKMSGSDNCSCVIVCLNQVSV 2263          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A835Z7B9_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.720e-23
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 QVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            +V V  +D FLIL CDG+WDV++SQQAV ++ RR+L H DVQRASREL +    +  +DNCSC+VVCLNQ+
Sbjct:   39 KVEVLPQDSFLILACDGIWDVMTSQQAVDFVQRRMLSHCDVQRASRELARKAVDLYSNDNCSCIVVCLNQL 109          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A834X481_9FABA (Protein-serine/threonine phosphatase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X481_9FABA)

HSP 1 Score: 79.7 bits (195), Expect = 9.110e-16
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            +QV++  +D+FLI+GCDG+WDVISSQ AVS++ R L +H D Q  +REL K   ++  SDN + +V+CL+ +
Sbjct:  296 KQVALTEDDEFLIIGCDGIWDVISSQDAVSFVRRGLRRHDDPQLCARELVKEALRLNTSDNLTVIVICLSSI 367          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: I1L0M5_SOYBN (Protein-serine/threonine phosphatase n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1L0M5_SOYBN)

HSP 1 Score: 79.7 bits (195), Expect = 9.180e-16
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            Q V++  +D+FLI+GCDG+WDVISSQ AVS++ R L +H D Q+ +REL K   ++  SDN + +V+CL+ V
Sbjct:  300 QVVTLTEDDEFLIIGCDGIWDVISSQDAVSFVRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSPV 371          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A1J7H0Y6_LUPAN (Protein-serine/threonine phosphatase n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7H0Y6_LUPAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.180e-15
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            Q V++  ED+FLI+GCDG+WDV+SSQ AVS   RRL +H D Q+ +REL K   ++  SDN + +V+CL+ V
Sbjct:  291 QLVTLTEEDEFLIIGCDGIWDVMSSQYAVSLARRRLRRHDDPQQCARELVKEALRLNTSDNLTVIVICLSSV 362          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A2P6QZD6_ROSCH (Protein-serine/threonine phosphatase n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QZD6_ROSCH)

HSP 1 Score: 78.6 bits (192), Expect = 1.880e-15
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQ 213
            Q+V +  +D+FLIL CDG+WDV+SSQ AVS + R L KH D Q+ +REL K   +M  +DN + +VVCL+ 
Sbjct:  255 QRVKLTEDDEFLILSCDGIWDVMSSQYAVSLVRRELRKHNDPQQCARELVKEALRMHAADNLTVIVVCLSS 325          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A0A9IEJ2_ARUDO (Protein-serine/threonine phosphatase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IEJ2_ARUDO)

HSP 1 Score: 75.9 bits (185), Expect = 3.070e-15
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLN 210
            ++V +  ED+FLI+GCDGLWDV+SSQ AVS + + L+KH D QR SREL +   +    DN + VVVC +
Sbjct:   98 REVRLTEEDEFLIIGCDGLWDVMSSQCAVSMVRKELMKHNDPQRCSRELVQEALRRDCCDNLTVVVVCFS 167          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: UPI0010A5336B (probable protein phosphatase 2C 13 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5336B)

HSP 1 Score: 78.2 bits (191), Expect = 3.360e-15
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    4 QVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            QVS+  +D+FLI+GCDG+WDV+SSQ AVS++ R L +H D Q+ +R+L K    +  SDN + +V+CL+ V
Sbjct:  297 QVSLTEDDEFLIIGCDGIWDVMSSQYAVSFVRRGLRRHDDPQQCARDLVKEALHLRTSDNLTVIVICLSSV 367          
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Match: A0A444ZEF9_ARAHY (PPM-type phosphatase domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444ZEF9_ARAHY)

HSP 1 Score: 76.3 bits (186), Expect = 4.020e-15
Identity = 31/72 (43.06%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELCKTLGKMPGSDNCSCVVVCLNQV 216
            Q V++  +D+FLI+GCDG+WDV+SSQ+ V ++HR+L++H D Q+ ++EL K   ++  +DN + + +CL+ V
Sbjct:  134 QVVTLTEKDEFLIIGCDGIWDVMSSQEVVRFVHRQLIRHDDPQQCTKELVKEALRLNTTDNLTVIGICLSPV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127834.2049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L844_9PHAE2.000e-3275.68PPM-type phosphatase domain-containing protein n=1... [more]
D8LIK7_ECTSI2.570e-2974.32cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835Z7B9_9STRA2.720e-2359.15Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A834X481_9FABA9.110e-1648.61Protein-serine/threonine phosphatase n=1 Tax=Senna... [more]
I1L0M5_SOYBN9.180e-1650.00Protein-serine/threonine phosphatase n=3 Tax=Glyci... [more]
A0A1J7H0Y6_LUPAN1.180e-1551.39Protein-serine/threonine phosphatase n=2 Tax=Lupin... [more]
A0A2P6QZD6_ROSCH1.880e-1550.70Protein-serine/threonine phosphatase n=2 Tax=Rosoi... [more]
A0A0A9IEJ2_ARUDO3.070e-1551.43Protein-serine/threonine phosphatase n=1 Tax=Arund... [more]
UPI0010A5336B3.360e-1549.30probable protein phosphatase 2C 13 n=1 Tax=Prosopi... [more]
A0A444ZEF9_ARAHY4.020e-1543.06PPM-type phosphatase domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127834contigH-elongata_contig127834:670..1414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.7e-25
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.8973234-CDS-H-elongata_contig127834:669..7561622929757.8973234-CDS-H-elongata_contig127834:669..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127834 670..756 -
1691679146.5785203-CDS-H-elongata_contig127834:669..7561691679146.5785203-CDS-H-elongata_contig127834:669..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127834 670..756 -
1622929757.9080713-CDS-H-elongata_contig127834:1270..14141622929757.9080713-CDS-H-elongata_contig127834:1270..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127834 1271..1414 -
1691679146.591314-CDS-H-elongata_contig127834:1270..14141691679146.591314-CDS-H-elongata_contig127834:1270..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127834 1271..1414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127834.2049.1prot_H-elongata_contig127834.2049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127834 670..1414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127834.2049.1

>prot_H-elongata_contig127834.2049.1 ID=prot_H-elongata_contig127834.2049.1|Name=mRNA_H-elongata_contig127834.2049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
QQVSVQAEDDFLILGCDGLWDVISSQQAVSYIHRRLLKHRDVQRASRELC
KTLGKMPGSDNCSCVVVCLNQVFILY*
back to top

mRNA from alignment at H-elongata_contig127834:670..1414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127834.2049.1 ID=mRNA_H-elongata_contig127834.2049.1|Name=mRNA_H-elongata_contig127834.2049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig127834:670..1414- (Himanthalia elongata Himel1 dioecious)
CAACAGGTATCGGTCCAGGCAGAGGACGACTTCCTGATCCTGGGGTGCGA TGGATTGTGGGACGTAATTTCTAGCCAGCAAGCGGTGTCCTACATCCACC GGAGGTTGCTCAAGCACCGCGACGTTCAAAGGGCCAGTCGGGAGGTACGC GAGGCGCGCGATGGGGGCGGACCCGAAAAGTCGCTCATCTCTAATAACCC TTTTGAAACCATCCCCGTTTGTTCCCGGGTGTATGCTATTTGCCATTTTT GCACCAGGCCGTAAATCAAACTGAATAGGCTGTAAACCGGACTCAGTTCC CTCCCCAAACCTCCCAAATGCTTCAGCTTTGTTTACGGCCTTTCCCCGGG GTGGGCATCGCCTAACCAATACAAACTCCGGGCTTAAACCGTATTAAATC GGTTCGATTTTGGTTGTGTGTGTGTGTATGTGTGTGTTCTTAACCGAACC AACCAGTCGATGGTTGATAACCGAAACATCAACTAGCACATGGAGTGGAG TGGAGTATACTGGGTAGCAATATATGGAAATAAAATAAAGAGTCACGCAG TCTCCTGCGCTCGCAAGGCGTCACAAGCTCCATCACACATGCCCACATGC CATCCTTCTTTGTGTTTCGTCTGGCCCCTTTTTTTCCCTTCTCTCTTTTT TTCGCCAGCTGTGCAAGACTCTGGGAAAGATGCCCGGGTCCGACAACTGC AGCTGCGTCGTGGTTTGTTTAAACCAGGTATTTATACTGTACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127834:670..1414-

>mRNA_H-elongata_contig127834.2049.1 ID=mRNA_H-elongata_contig127834.2049.1|Name=mRNA_H-elongata_contig127834.2049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig127834:670..1414- (Himanthalia elongata Himel1 dioecious)
CAACAGGTATCGGTCCAGGCAGAGGACGACTTCCTGATCCTGGGGTGCGA
TGGATTGTGGGACGTAATTTCTAGCCAGCAAGCGGTGTCCTACATCCACC
GGAGGTTGCTCAAGCACCGCGACGTTCAAAGGGCCAGTCGGGAGCAACAG
GTATCGGTCCAGGCAGAGGACGACTTCCTGATCCTGGGGTGCGATGGATT
GTGGGACGTAATTTCTAGCCAGCAAGCGGTGTCCTACATCCACCGGAGGT
TGCTCAAGCACCGCGACGTTCAAAGGGCCAGTCGGGAGCTGTGCAAGACT
CTGGGAAAGATGCCCGGGTCCGACAACTGCAGCTGCGTCGTGGTTTGTTT
AAACCAGGTATTTATACTGTACTAGCTGTGCAAGACTCTGGGAAAGATGC
CCGGGTCCGACAACTGCAGCTGCGTCGTGGTTTGTTTAAACCAGGTATTT
ATACTGTACTAG
back to top