mRNA_H-elongata_contig127830.2048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127830.2048.1
Unique NamemRNA_H-elongata_contig127830.2048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127830.2048.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.060e-6
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = -2 
Query:  108 GCICD--------RDVFNENSKRLLGFEEDNKLTLLNTFVCTPKRGMPFTIQSANRGKGKN 266
            GC CD        RD+ N N +RLLG   DN+L+L+NT++ TPK G+  T QS+N+GK K+
Sbjct:  151 GC-CDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GV-HTFQSSNKGKEKH 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127830.2048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP87_9PHAE6.060e-647.54Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127830contigH-elongata_contig127830:786..1103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.8600185-CDS-H-elongata_contig127830:785..11031622929757.8600185-CDS-H-elongata_contig127830:785..1103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127830 786..1103 +
1691679146.5661776-CDS-H-elongata_contig127830:785..11031691679146.5661776-CDS-H-elongata_contig127830:785..1103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127830 786..1103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127830.2048.1prot_H-elongata_contig127830.2048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127830 786..1103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127830.2048.1

>prot_H-elongata_contig127830.2048.1 ID=prot_H-elongata_contig127830.2048.1|Name=mRNA_H-elongata_contig127830.2048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
VHEIVIQFWCLPRGRADIKAADQSAVHLLCQEIIHTFLPLPRLALWMVKG
MPLLGVQTKVFRRVSLLSSSKPSSRLLFSLNTSRSHMHPTPFCLLPRVPY
FSSLP*
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mRNA from alignment at H-elongata_contig127830:786..1103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127830.2048.1 ID=mRNA_H-elongata_contig127830.2048.1|Name=mRNA_H-elongata_contig127830.2048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig127830:786..1103+ (Himanthalia elongata Himel1 dioecious)
GTACACGAGATTGTGATCCAATTTTGGTGCCTCCCAAGGGGGCGGGCGGA
TATTAAAGCAGCGGACCAATCGGCGGTCCACCTGCTTTGTCAGGAGATTA
TCCATACGTTCTTGCCCTTGCCACGGTTAGCGCTTTGGATGGTGAAGGGC
ATGCCCCTTTTAGGGGTACAAACAAAAGTGTTCAGGAGAGTGAGCTTGTT
GTCTTCTTCGAAACCCAGCAGTCGTTTGCTGTTTTCGTTGAACACATCCC
GGTCGCATATGCACCCAACACCTTTCTGTCTGCTTCCCCGCGTCCCTTAC
TTCTCTTCCCTCCCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig127830:786..1103+

>mRNA_H-elongata_contig127830.2048.1 ID=mRNA_H-elongata_contig127830.2048.1|Name=mRNA_H-elongata_contig127830.2048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig127830:786..1103+ (Himanthalia elongata Himel1 dioecious)
GTACACGAGATTGTGATCCAATTTTGGTGCCTCCCAAGGGGGCGGGCGGA
TATTAAAGCAGCGGACCAATCGGCGGTCCACCTGCTTTGTCAGGAGATTA
TCCATACGTTCTTGCCCTTGCCACGGTTAGCGCTTTGGATGGTGAAGGGC
ATGCCCCTTTTAGGGGTACAAACAAAAGTGTTCAGGAGAGTGAGCTTGTT
GTCTTCTTCGAAACCCAGCAGTCGTTTGCTGTTTTCGTTGAACACATCCC
GGTCGCATATGCACCCAACACCTTTCTGTCTGCTTCCCCGCGTCCCTTAC
TTCTCTTCCCTCCCCTAGGTACACGAGATTGTGATCCAATTTTGGTGCCT
CCCAAGGGGGCGGGCGGATATTAAAGCAGCGGACCAATCGGCGGTCCACC
TGCTTTGTCAGGAGATTATCCATACGTTCTTGCCCTTGCCACGGTTAGCG
CTTTGGATGGTGAAGGGCATGCCCCTTTTAGGGGTACAAACAAAAGTGTT
CAGGAGAGTGAGCTTGTTGTCTTCTTCGAAACCCAGCAGTCGTTTGCTGT
TTTCGTTGAACACATCCCGGTCGCATATGCACCCAACACCTTTCTGTCTG
CTTCCCCGCGTCCCTTACTTCTCTTCCCTCCCCTAG
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