mRNA_H-elongata_contig127796.2046.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A6H5J9H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H5_9PHAE) HSP 1 Score: 192 bits (489), Expect = 7.870e-58 Identity = 108/161 (67.08%), Postives = 127/161 (78.88%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFLSNGEGGE-VIQGSASEATLVAVLAARMRALRHMRGSNPS-VSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCHR 477
TE+ DQLGRAV LPEAFLS+G VIQGSASE TLVAV+AAR RAL+HMR +P+ VSD ELL+ MTLYASDQ+H+SVQKAANIAGLG+N+RLIPT GS ++ Y LDA +L AM+ED A+GLTP+FV+ANVGSTNTCA+DPV SL C R
Sbjct: 185 TELETVVLDQLGRAVDLPEAFLSSGXXXXXVIQGSASEGTLVAVVAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQAHSSVQKAANIAGLGSNLRLIPTSGSCEDGQRCYTLDAAELSEAMREDEAAGLTPVFVSANVGSTNTCAVDPVRSLGEACRR 345
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: D8LUA2_ECTSI (Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA2_ECTSI) HSP 1 Score: 194 bits (494), Expect = 9.700e-57 Identity = 109/161 (67.70%), Postives = 128/161 (79.50%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFLSNGEGGE--VIQGSASEATLVAVLAARMRALRHMRGSNPS-VSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCH 474
TE+ DQLGRAV LPEAFLS+G VIQGSASE+TLVAVLAAR RAL+HMR +P+ VSD ELL+ MTLYASDQ+H+SVQKAANIAGLG+N+RLIPTRGS ++ Y LDA +L AM+ED A+GLTP+FV+ANVGSTNTCA+DPV SL C
Sbjct: 186 TELETVVLDQLGRAVDLPEAFLSSGXXXXXXVIQGSASESTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQAHSSVQKAANIAGLGSNLRLIPTRGSGEDGQRCYTLDAGELSEAMREDEAAGLTPVFVSANVGSTNTCAVDPVRSLGEACR 346
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A812K9W8_9DINO (ELI5 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812K9W8_9DINO) HSP 1 Score: 116 bits (291), Expect = 1.210e-27 Identity = 75/157 (47.77%), Postives = 104/157 (66.24%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFLSNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSS-MTLYASDQSHTSVQKAANIAGLG-ANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLAR 465
TE+ D +GRA+GLPEAFLS G+GG VIQG+ASEA LVA++AAR RAL RG + D L+ + YAS+Q+H+S+ KAA + G+G +N+RL+ T G+ A+DA L A ++ED +GL P FV A +G+T+T AIDP+ + R
Sbjct: 116 TELETRMLDWMGRAIGLPEAFLSEGDGGGVIQGTASEAALVAMVAARQRALDD-RGVEET--DRAALNGRLVAYASEQAHSSIVKAAMVCGIGRSNVRLVGTDGN-------LAMDAERLRAQVEEDARAGLIPFFVCATLGTTSTGAIDPLAEIVR 262
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A2Y9G3N0_TRIMA (aromatic-L-amino-acid decarboxylase n=2 Tax=Eutheria TaxID=9347 RepID=A0A2Y9G3N0_TRIMA) HSP 1 Score: 114 bits (284), Expect = 1.280e-27 Identity = 66/161 (40.99%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFL--SNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCHR 477
TE+ D LG+ + LPE FL SNGEGG VIQGSASEATLVA+LAAR + +RH++ ++P ++ ++ + Y+SDQ+H+SV++A I G+ ++ IP+ + +A+ A L A++ D A+GL P FV A +G+T+ C+ D + + C+R
Sbjct: 112 TELETVMMDWLGKMLELPETFLAGSNGEGGGVIQGSASEATLVALLAARTKVMRHLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGV--KLKAIPS-------DDKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNR 263
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: L7QSR8_9NEOP (Dopa decarboxylase (Fragment) n=1 Tax=Palaeomicra chalcophanes TaxID=173653 RepID=L7QSR8_9NEOP) HSP 1 Score: 110 bits (274), Expect = 7.500e-27 Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFL--SNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCH 474
TE+ D LG +GLPE FL S G GG VIQGSASEATLVA+L A+ +A+ + +NP +++E +S + Y S Q+H+SV++A + G+ +RL+PT + ++L L+ AM++D GL P F A +G+TN+CA D + L C+
Sbjct: 6 TELEVVMLDWLGEMIGLPEVFLAKSGGAGGGVIQGSASEATLVALLGAKSKAIHKAKKTNPDFNENEFVSKLVGYCSIQAHSSVERAGLLGGI--KLRLLPT-------DDRHSLRGETLLKAMRKDIDQGLVPFFAVATLGTTNSCAFDNLEELGPICN 156
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A1W0X857_HYPDU (Aromatic-L-amino-acid decarboxylase n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0X857_HYPDU) HSP 1 Score: 114 bits (284), Expect = 1.140e-26 Identity = 68/161 (42.24%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFL--SNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCHR 477
TE+ D LG+ + LPE FL S G+GG VIQG+ASEAT+VA+LAA+ R +R ++ +P +++ ++LS + YASDQSH+ V++AA + L NIRLI + +K++A+DA L +++D A GL P +V A +G+T CA D + + C R
Sbjct: 112 TELEVVMMDWLGKMLKLPEEFLACSGGQGGGVIQGTASEATVVALLAAKSRRIRKIKEEHPEITNMDILSKLMCYASDQSHSGVERAAMLGSL--NIRLIKS-------DKNFAMDAKILEETIRKDKADGLFPFYVVATLGTTPCCAFDDLTEIGPVCKR 263
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: G3TFB0_LOXAF (Dopa decarboxylase n=14 Tax=Eutheria TaxID=9347 RepID=G3TFB0_LOXAF) HSP 1 Score: 113 bits (283), Expect = 1.530e-26 Identity = 68/161 (42.24%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFL--SNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCHR 477
TE+ D LG+ + LPEAFL SNGEGG VIQGSASEATLVA+LAAR + R ++ ++P ++ ++ + Y+SDQ+H+SV++A I G+ ++ IP+ G +A+ A L A++ D A+GL P FV A +G+T+ C+ D V + C+R
Sbjct: 112 TELETVMMDWLGKMLELPEAFLAGSNGEGGGVIQGSASEATLVALLAARTKVTRQLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGV--KLKAIPSDGK-------FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNVLEVGPICNR 263
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: Q5M8I7_XENTR (Hypothetical LOC496742 n=8 Tax=Xenopus TaxID=8353 RepID=Q5M8I7_XENTR) HSP 1 Score: 113 bits (283), Expect = 1.600e-26 Identity = 66/160 (41.25%), Postives = 103/160 (64.38%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFLSN--GEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCH 474
TE+ D LG+ +GLPE FL+ GEGG VIQG+ASEATL+A+LAAR + R ++ NP +++ E++S M Y+SDQ+H+SV++A I+G+ ++ IP+ ++++ L A++ED A GL P+F A +G+TN+CA D + L C+
Sbjct: 112 TELETVMLDWLGKMIGLPEQFLAGNKGEGGGVIQGTASEATLMALLAARTKVTRRLQAENPKLTEAEIVSRMVAYSSDQAHSSVERAGLISGV--RMKKIPS-------DENFVARGQALKKALEEDKAEGLIPIFFCATLGTTNSCAFDNLLELGPVCN 262
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A7S3VSG4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VSG4_DUNTE) HSP 1 Score: 114 bits (284), Expect = 1.770e-26 Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFL--SNGEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLAR 465
TE+ D LG+ +GLP FL S G GG VIQG++SEA LVA+LAAR R LR S+ ++ Y+SDQ+H++ +KA I G+ ++R++PTR AE YAL L AA++ED ASGL P ++ A +G+T++CA+DPVG LAR
Sbjct: 193 TELEMLMMDWLGQLLGLPSKFLYSSGGPGGGVIQGTSSEAVLVALLAARARTLRGRPKSDAL--------NLVAYSSDQAHSAFKKACMIVGIN-HVRVLPTR-----AEDDYALQPSVLQAAIEEDIASGLLPCYLCATIGTTSSCAVDPVGELAR 335
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Match: A0A4W2DS69_BOBOX (Dopa decarboxylase n=2 Tax=Bos indicus x Bos taurus TaxID=30522 RepID=A0A4W2DS69_BOBOX) HSP 1 Score: 113 bits (282), Expect = 1.910e-26 Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = 1
Query: 1 TEMRATRADQLGRAVGLPEAFLSN--GEGGEVIQGSASEATLVAVLAARMRALRHMRGSNPSVSDHELLSSMTLYASDQSHTSVQKAANIAGLGANIRLIPTRGSEATAEKSYALDAFDLVAAMKEDFASGLTPMFVNANVGSTNTCAIDPVGSLARGCH 474
TE+ D LG+ + LPEAFL+ GEGG VIQG+ASEATLVA+LAAR + RH++ ++P + ++ + YASDQ+H+SV+KA I G+ ++ IP+ G +A+ A L A++ D A+GL P FV A +G+T+ C+ D + + CH
Sbjct: 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGGV--RLKAIPSDGK-------FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127796.2046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig127796.2046.1 >prot_H-elongata_contig127796.2046.1 ID=prot_H-elongata_contig127796.2046.1|Name=mRNA_H-elongata_contig127796.2046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp MRATRADQLGRAVGLPEAFLSNGEGGEVIQGSASEATLVAVLAARMRALRback to top mRNA from alignment at H-elongata_contig127796:140..1167+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig127796.2046.1 ID=mRNA_H-elongata_contig127796.2046.1|Name=mRNA_H-elongata_contig127796.2046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-elongata_contig127796:140..1167+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig127796:140..1167+ >mRNA_H-elongata_contig127796.2046.1 ID=mRNA_H-elongata_contig127796.2046.1|Name=mRNA_H-elongata_contig127796.2046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig127796:140..1167+ (Himanthalia elongata Himel1 dioecious)back to top |