mRNA_H-elongata_contig127775.2045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127775.2045.1
Unique NamemRNA_H-elongata_contig127775.2045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.100e-30
Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G  + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   RGG  ++KVLGAYGRD++N NG+ L  +A D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRGGCCDAKVLGAYGRDIMNNNGERLFGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 8.030e-30
Identity = 68/168 (40.48%), Postives = 99/168 (58.93%), Query Frame = 1
Query:   22 LLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTEEA--TEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            ++GL ET+R G   +T  G  + +SG   G K  +G HGVG+AIK  + +   +    +ECIS RL+K R+ I     +TF V YAPTE A  T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:   14 VIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGR--RRDGCCDAKIMGAYGRDIMNNNGERLLGLAAD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.460e-29
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G+ + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGDVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRDGCCDAKIMGAYGRDIMNNNGERLLGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.800e-28
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G    +SG   G KG  G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRDGCCDAKIMGAYGRDIMNNNGERLLGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.540e-28
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R G   +   G  + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    TEG     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:  208 GCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRKGCCDAKIMGAYGRDIMNNNGERLLGLASD 376          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.440e-28
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++ L ET+R+G   +   G  + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+KAR+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:   11 GCDVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGR--RREGCCDAKIMGAYGRDIMNNNGERLLGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.060e-28
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G  + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRDGCCDAKIMGAYGRDIMNNNGERLLGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.460e-28
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G  + +SG   G K  +G HGVG+AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  ++K++GAYGRD++N NG+ LL +A D
Sbjct:  690 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRDGCCDAKIMGAYGRDIMNNNGERLLGLASD 858          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 9.200e-28
Identity = 65/168 (38.69%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   22 LLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            ++GL ET+R+G   +   G  + +SG   G K  +G HGVG AIK  +     ++   +ECIS RL+K R+ I     +TF V YAPTE    T G     K  +  AL++ +  V  R ++ +L DANAR G+   R G  + K++GAYGRD++  NG+ LL +A D
Sbjct:   14 VIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR--RRVGCCDGKMMGAYGRDIMTNNGERLLGLASD 179          
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.030e-27
Identity = 66/171 (38.60%), Postives = 98/171 (57.31%), Query Frame = 1
Query:   13 GVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLAIKNEIVNKADKDDIAIECISARLLKARVSIKYNF-ITFGVAYAPTE--EATEG----EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAYGRDVLNENGKLLLSVAED 504
            G  ++GL ET+R+G   +   G  + +SG   G K  +G HGVG+AIK  I     ++   +ECIS RL+K R+ I     +TF V YAPTE   +T G     K  +  AL++ +  V  R ++ +L  ANAR G+   R G  ++K++GA GRD++N NG+ LL +A D
Sbjct:   42 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR--RRDGCCDAKIMGANGRDIMNNNGERLLELASD 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127775.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBZ6_9PHAE5.100e-3040.35Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KP87_9PHAE8.030e-3040.48Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JII6_9PHAE5.460e-2939.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ63_9PHAE1.800e-2839.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Q1_9PHAE4.540e-2839.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUT2_9PHAE5.440e-2839.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7A7_9PHAE6.060e-2839.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE8.460e-2839.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE9.200e-2838.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE1.030e-2738.60Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127775contigH-elongata_contig127775:353..856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog27923.ML29581a-PA
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.7075987-CDS-H-elongata_contig127775:352..8561622929757.7075987-CDS-H-elongata_contig127775:352..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127775 353..856 +
1691679146.490131-CDS-H-elongata_contig127775:352..8561691679146.490131-CDS-H-elongata_contig127775:352..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127775 353..856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127775.2045.1prot_H-elongata_contig127775.2045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127775 353..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127775.2045.1

>prot_H-elongata_contig127775.2045.1 ID=prot_H-elongata_contig127775.2045.1|Name=mRNA_H-elongata_contig127775.2045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
MLQEGVMLLGLSETKRDGHSEVTASGNRVYFSGDCTGVKGNKGQHGVGLA
IKNEIVNKADKDDIAIECISARLLKARVSIKYNFITFGVAYAPTEEATEG
EKTKYIAALNSTVSSVPGRKYVFILTDANARVGKGGERGGDAESKVLGAY
GRDVLNENGKLLLSVAED
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mRNA from alignment at H-elongata_contig127775:353..856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127775.2045.1 ID=mRNA_H-elongata_contig127775.2045.1|Name=mRNA_H-elongata_contig127775.2045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig127775:353..856+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCAAGAGGGTGTGATGTTATTGGGCTTGTCGGAGACAAAACGGGA CGGACATTCTGAAGTAACTGCATCTGGAAACCGGGTCTATTTCAGTGGTG ATTGCACCGGAGTTAAAGGGAACAAGGGGCAACATGGGGTGGGACTAGCG ATAAAGAATGAGATCGTTAACAAGGCGGACAAGGACGACATCGCAATCGA GTGCATCAGTGCACGTCTTCTGAAGGCTCGAGTATCGATTAAATATAATT TTATTACGTTTGGGGTAGCCTACGCTCCGACCGAGGAAGCGACTGAGGGG GAGAAGACCAAGTATATTGCAGCCCTCAACAGCACCGTATCATCAGTGCC CGGTCGGAAATACGTCTTCATTTTGACCGACGCGAATGCCAGAGTAGGGA AAGGGGGTGAGAGAGGCGGGGACGCAGAAAGCAAGGTATTGGGCGCATAT GGCAGAGACGTGCTCAACGAAAACGGAAAACTACTGCTAAGTGTTGCAGA AGAC
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Coding sequence (CDS) from alignment at H-elongata_contig127775:353..856+

>mRNA_H-elongata_contig127775.2045.1 ID=mRNA_H-elongata_contig127775.2045.1|Name=mRNA_H-elongata_contig127775.2045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig127775:353..856+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCAAGAGGGTGTGATGTTATTGGGCTTGTCGGAGACAAAACGGGA
CGGACATTCTGAAGTAACTGCATCTGGAAACCGGGTCTATTTCAGTGGTG
ATTGCACCGGAGTTAAAGGGAACAAGGGGCAACATGGGGTGGGACTAGCG
ATAAAGAATGAGATCGTTAACAAGGCGGACAAGGACGACATCGCAATCGA
GTGCATCAGTGCACGTCTTCTGAAGGCTCGAGTATCGATTAAATATAATT
TTATTACGTTTGGGGTAGCCTACGCTCCGACCGAGGAAGCGACTGAGGGG
GAGAAGACCAAGTATATTGCAGCCCTCAACAGCACCGTATCATCAGTGCC
CGGTCGGAAATACGTCTTCATTTTGACCGACGCGAATGCCAGAGTAGGGA
AAGGGGGTGAGAGAGGCGGGGACGCAGAAAGCAAGGTATTGGGCGCATAT
GGCAGAGACGTGCTCAACGAAAACGGAAAACTACTGCTAAGTGTTGCAGA
AGACATGTTGCAAGAGGGTGTGATGTTATTGGGCTTGTCGGAGACAAAAC
GGGACGGACATTCTGAAGTAACTGCATCTGGAAACCGGGTCTATTTCAGT
GGTGATTGCACCGGAGTTAAAGGGAACAAGGGGCAACATGGGGTGGGACT
AGCGATAAAGAATGAGATCGTTAACAAGGCGGACAAGGACGACATCGCAA
TCGAGTGCATCAGTGCACGTCTTCTGAAGGCTCGAGTATCGATTAAATAT
AATTTTATTACGTTTGGGGTAGCCTACGCTCCGACCGAGGAAGCGACTGA
GGGGGAGAAGACCAAGTATATTGCAGCCCTCAACAGCACCGTATCATCAG
TGCCCGGTCGGAAATACGTCTTCATTTTGACCGACGCGAATGCCAGAGTA
GGGAAAGGGGGTGAGAGAGGCGGGGACGCAGAAAGCAAGGTATTGGGCGC
ATATGGCAGAGACGTGCTCAACGAAAACGGAAAACTACTGCTAAGTGTTG
CAGAAGAC
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