mRNA_H-elongata_contig127600.2038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127600.2038.1
Unique NamemRNA_H-elongata_contig127600.2038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Match: D8LCT7_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.630e-37
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:   19 VKEGDVVGIALDFTDLPMLFFAKGESPLGRGDELSVMRIRGTVYPAVGVSGGAQVTLAFAARDLVHAPPRKCQALVVGQDMI 264
            +KEGDV+GIALDFTDLPMLFF +G  PLG GDEL+VMRIRGTVYPA GV GGA +++AFA   L H PPRKC+AL+VGQDM+
Sbjct:   52 LKEGDVIGIALDFTDLPMLFFTRGGDPLGEGDELAVMRIRGTVYPAFGVGGGAALSVAFAGDSLAHTPPRKCEALIVGQDMM 133
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BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Match: F0Y3A2_AURAN (SPRY domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3A2_AURAN)

HSP 1 Score: 60.1 bits (144), Expect = 4.240e-9
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   13 AQVKEGDVVGIALDFTDLPML-FFAKGESPLGRGDELSVMRIRGTVYPAVGVSGGAQVTLAFAARDLVHAPPRKCQALVVGQDMI 264
            A   EGDV+G+A    +LP L FF  GE  L  G    V RIRG V+PA  V+GGA++   F   +  HAPPR   AL V Q++I
Sbjct:  107 AGAVEGDVIGVAFGQAELPNLSFFLNGEL-LEHG---MVNRIRGEVFPAASVTGGAKLRCVFDEANFEHAPPRTHSALRVTQNII 187
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BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Match: A0A836CE96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE96_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.320e-6
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   28 GDVVGIALDFTDLPMLFFAKGESPLGRGDELSVMRIRGTVYPAVGVSGGAQVTLAFAARDLVHAPPRKCQALVVGQDMI 264
            G V+GI ++++ LPM+            +  SV R+RGTVYPAV V GGA   + F   + V   PRKC AL   +DMI
Sbjct:   47 GTVLGICVNWSALPMMRLLDAAG----AEVASVRRVRGTVYPAVTVRGGAACDVRFGGFEGVV--PRKCTALTRVKDMI 119
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BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Match: A0A7S3DXB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXB3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.160e-5
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:   19 VKEGDVVGIALDFTDLPMLFFAKGESPLGRGDELSVMRIRGTVYPAVGV--SGGAQVTLAFAARDLVHAPP 225
            V  GD+VG+A+  +DLPM+ F     PL     LSV R RG+VYP+V +  + G    L FA RD     P
Sbjct:   31 VSNGDIVGVAVQQSDLPMVQFLLNGEPL---HSLSVNRFRGSVYPSVYLPENEGLSARLVFAERDFEQLSP 98
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BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Match: A0A1Z5JFB4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFB4_FISSO)

HSP 1 Score: 50.8 bits (120), Expect = 1.470e-5
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   16 QVKEGDVVGIALDFTDLPMLFFAKGESPLGRGDELSVMRIRGTVYPAVGVSGGAQVTLAFAARDLVH---APPRKCQALVVGQDMI 264
            +VK+GDVVGIA+  +DLPM+ F     PL    +L+V R RG VYPA+ +     +T+ F  R+      +P  +   L+V + +I
Sbjct:  117 KVKDGDVVGIAVQQSDLPMVQFLLNGEPL---HDLAVNRFRGAVYPAIYLPENDGLTVRFVFRESEFEKLSPHARFGPLIVARGII 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127600.2038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCT7_ECTSI1.630e-3773.17B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
F0Y3A2_AURAN4.240e-945.88SPRY domain-containing protein n=1 Tax=Aureococcus... [more]
A0A836CE96_9STRA3.320e-641.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3DXB3_9STRA1.160e-542.25Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Z5JFB4_FISSO1.470e-537.21Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127600contigH-elongata_contig127600:1473..1739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog44056.XP_009035097.1
Preferred nameSPRYD7
EggNOG free text desc.SPRY domain
EggNOG OGsKOG4030@1,KOG4030@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-07_006850.1
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.6881142-CDS-H-elongata_contig127600:1472..17391622929756.6881142-CDS-H-elongata_contig127600:1472..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127600 1473..1739 +
1691679145.982552-CDS-H-elongata_contig127600:1472..17391691679145.982552-CDS-H-elongata_contig127600:1472..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127600 1473..1739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127600.2038.1prot_H-elongata_contig127600.2038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127600 1473..1739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127600.2038.1

>prot_H-elongata_contig127600.2038.1 ID=prot_H-elongata_contig127600.2038.1|Name=mRNA_H-elongata_contig127600.2038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MECGAQVKEGDVVGIALDFTDLPMLFFAKGESPLGRGDELSVMRIRGTVY
PAVGVSGGAQVTLAFAARDLVHAPPRKCQALVVGQDMI*
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mRNA from alignment at H-elongata_contig127600:1473..1739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127600.2038.1 ID=mRNA_H-elongata_contig127600.2038.1|Name=mRNA_H-elongata_contig127600.2038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig127600:1473..1739+ (Himanthalia elongata Himel1 dioecious)
ATGGAATGCGGCGCCCAGGTGAAGGAGGGGGACGTAGTCGGGATCGCTTT
AGATTTCACCGACCTCCCGATGCTGTTTTTCGCCAAGGGGGAGTCTCCGC
TCGGCCGGGGGGACGAGCTGTCCGTGATGAGAATCCGGGGCACGGTGTAC
CCCGCCGTGGGAGTGAGCGGGGGCGCGCAGGTTACCTTAGCGTTCGCGGC
GAGAGATCTAGTGCACGCGCCGCCTCGCAAGTGCCAGGCCTTGGTTGTAG
GGCAGGACATGATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig127600:1473..1739+

>mRNA_H-elongata_contig127600.2038.1 ID=mRNA_H-elongata_contig127600.2038.1|Name=mRNA_H-elongata_contig127600.2038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig127600:1473..1739+ (Himanthalia elongata Himel1 dioecious)
ATGGAATGCGGCGCCCAGGTGAAGGAGGGGGACGTAGTCGGGATCGCTTT
AGATTTCACCGACCTCCCGATGCTGTTTTTCGCCAAGGGGGAGTCTCCGC
TCGGCCGGGGGGACGAGCTGTCCGTGATGAGAATCCGGGGCACGGTGTAC
CCCGCCGTGGGAGTGAGCGGGGGCGCGCAGGTTACCTTAGCGTTCGCGGC
GAGAGATCTAGTGCACGCGCCGCCTCGCAAGTGCCAGGCCTTGGTTGTAG
GGCAGGACATGATCTGAATGGAATGCGGCGCCCAGGTGAAGGAGGGGGAC
GTAGTCGGGATCGCTTTAGATTTCACCGACCTCCCGATGCTGTTTTTCGC
CAAGGGGGAGTCTCCGCTCGGCCGGGGGGACGAGCTGTCCGTGATGAGAA
TCCGGGGCACGGTGTACCCCGCCGTGGGAGTGAGCGGGGGCGCGCAGGTT
ACCTTAGCGTTCGCGGCGAGAGATCTAGTGCACGCGCCGCCTCGCAAGTG
CCAGGCCTTGGTTGTAGGGCAGGACATGATCTGA
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