mRNA_H-elongata_contig12755.2037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12755.2037.1
Unique NamemRNA_H-elongata_contig12755.2037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.190e-29
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:   61 RRYPPPRAGY-YVVHSAGES-----PRAVRAEEVSFIIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAPIVRVVTAPFPPMFGVRASTVGLQRANIEDRK 393
            +RYPPP AGY YVV           PRAVRA E  FII RV + + +   GGE+ + +QVT+NDGYKY VLRRY QFDQLR RV+ ++R  T PFPP   +R+STVGL  A++E+R+
Sbjct:    2 QRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
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BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.710e-26
Identity = 69/156 (44.23%), Postives = 92/156 (58.97%), Query Frame = 1 
Query:    1 GIIGAVTVGATVAAVVASPRRRYPPPR-AGYYVVHSAGES-------PRAVRAEEVSFIIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAPIVRVVTAPFPPMFGVRASTVGLQRANIEDRKWGHAADLASITLHRGVN 444
            G++GA+  GA +AAVV            AGY  V    +S       PRAVRA E  FII RV + + +   GGE+ + +Q+T+NDGYKY VLRRY QFDQLR RV+ ++R  T PFPP   +R+STVGL  A++E+R+    A L S+      N
Sbjct:   46 GLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASAN 201
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BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.350e-8
Identity = 45/102 (44.12%), Postives = 54/102 (52.94%), Query Frame = 2 
Query:  401 MLQTWLQSLCTAASTSYPALRVPMYNFLETALNYPPDLIAVPNTAAATSSE-LLAGRIHTRKPYPFPRGTTPHTNLAGAGDQRTSRPARQLGPGRTTRSSPP 703
            MLQ WLQSLCTAAST+ PALRVP+Y+FLETA  YPP+       A  TSS+   A   HT    P     T    +A A  +     A   G G ++   PP
Sbjct:    1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPE-------APVTSSDPTTASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPP 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJX9_9PHAE2.190e-2953.85PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LSX2_ECTSI6.710e-2644.23Similar to intersectin 2 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JHJ6_9PHAE2.350e-844.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12755contigH-elongata_contig12755:3217..5646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D8LSX2
KEGG koko:K12472
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorysignal peptide
Exons4
Model size1311
Cds size810
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12755.2037.1prot_H-elongata_contig12755.2037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12755 3717..5646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.5780575-UTR-H-elongata_contig12755:3216..37161622929756.5780575-UTR-H-elongata_contig12755:3216..3716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12755 3217..3716 -
1691679145.9414515-UTR-H-elongata_contig12755:3216..37161691679145.9414515-UTR-H-elongata_contig12755:3216..3716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12755 3217..3716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.6027863-CDS-H-elongata_contig12755:3716..41301622929756.6027863-CDS-H-elongata_contig12755:3716..4130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 3717..4130 -
1691679145.9514666-CDS-H-elongata_contig12755:3716..41301691679145.9514666-CDS-H-elongata_contig12755:3716..4130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 3717..4130 -
1622929756.6164258-CDS-H-elongata_contig12755:4438..46151622929756.6164258-CDS-H-elongata_contig12755:4438..4615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 4439..4615 -
1691679145.9587624-CDS-H-elongata_contig12755:4438..46151691679145.9587624-CDS-H-elongata_contig12755:4438..4615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 4439..4615 -
1622929756.628577-CDS-H-elongata_contig12755:4894..50481622929756.628577-CDS-H-elongata_contig12755:4894..5048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 4895..5048 -
1691679145.966237-CDS-H-elongata_contig12755:4894..50481691679145.966237-CDS-H-elongata_contig12755:4894..5048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 4895..5048 -
1622929756.6426353-CDS-H-elongata_contig12755:5581..56461622929756.6426353-CDS-H-elongata_contig12755:5581..5646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 5582..5646 -
1691679145.9735878-CDS-H-elongata_contig12755:5581..56461691679145.9735878-CDS-H-elongata_contig12755:5581..5646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12755 5582..5646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12755.2037.1

>prot_H-elongata_contig12755.2037.1 ID=prot_H-elongata_contig12755.2037.1|Name=mRNA_H-elongata_contig12755.2037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
GIIGAVTVGATVAAVVASPRRRYPPPRAGYYVVHSAGESPRAVRAEEVSF
IIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAP
IVRVVTAPFPPMFGVRASTVGLQRANIEDRKWGHAADLASITLHRGVNQL
PGSPRSHVQLPRDRPQLPSRSDCRPQHGRRYQQRALGGKDSYQKTVPIPA
WHNPTHQPSWSWGSTYIPPRTPAGAGAHNPFLSPPPRFSTRVRDPTYPRS
RSGTRQSPRGAGRGRSNTA*
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mRNA from alignment at H-elongata_contig12755:3217..5646-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12755.2037.1 ID=mRNA_H-elongata_contig12755.2037.1|Name=mRNA_H-elongata_contig12755.2037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2430bp|location=Sequence derived from alignment at H-elongata_contig12755:3217..5646- (Himanthalia elongata Himel1 dioecious)
GGTATCATCGGAGCCGTCACTGTCGGAGCGACTGTCGCAGCGGTGGTCGC
TTCGCCTCGCCGCAGGTACTACTGTAGCACCACTGCTGCAAGTAGATGTA
CAGTGGAGTAGAGGTGTGCGTCCAATCATTGTGGCGTCTACCGCAAAGTA
AAATAATTCGCCCTCCAATTTTGTTGAGTAAAGACACCGCGCTTGTTTTT
CCGATGGACAACAATGTACTGCAACGGTGTCGTAGTGCTTGAATTGGAAG
CGTTGATATCTCACTGTAGCGTAAGAAGGCGCCATCATCCCCGCGTCACG
TCTATTCGGGCGCGGGGCCTTTGCAACTTCACCAGGAACGTACCATCTCG
TACGCGCTAAATACGTAGCTCGGGGTCACACCAGGAGTCAGCAGCCTGGA
TCCCGATACACCTTTTGCGTGACGTCACCCTATGCCGCCGAAACTACCAC
CGGCTGCTGCCTCAAAATCCTTCTCTCGTAATACTCATGTACAGAAAGCA
TTAAATGCATCAACCTAATAAATATAATTTATTATCGTTAAGCTTTTCAA
CAGTGACGTAGATCTCACGAGATGCCCCCTTCGTGGAAGACGGCGCAGGT
ATCCGCCTCCTCGTGCCGGCTACTATGTGGTACACTCTGCGGGAGAGTCG
CCGAGAGCGGTTCGCGCCGAAGAAGTGTCCTTCATAATCAGGCGCGTGCA
AATCACGGCTCTTCAGCAAGAGTCAGGAGGAGAGATCTTCTACCTGATCC
AGGTCCGTTTCAGACAGACGCAGTCGATATCTTCCTTTGTTTTTTGTTTG
AAACGATCACATTATTATTATTTCTCAATGTCGCAAAATATTAATTTTCG
TCATCGGGCGTAAAAAAAACAAAAACCTTTTCGCGATGCCGGTCGTTCGG
TTGACGATTCCGGCACGCCTGCCTGCCTGCCCACCCGCCGTCTCACCTTT
CCATCACCCATGGATCTACTATTTTGTTTGGGCAATGTTCTGCGCTCATG
TCCCTCACCTCGATTTTGAACCCAACCAAAGGTTACCATCAACGATGGTT
ACAAGTATTATGTGCTGAGGCGATACCATCAGTTTGACCAGCTCAGAGCG
CGCGTGGCGCCAATTGTACGCGTCGTGACCGCGCCCTTCCCGCCTATGTT
CGGCGTTCGAGCCTCCACCGTGGGACTGCAGCGGGCAAACATCGAGGATC
GCAAGTGGGTAGGCTGTAAAATATATGGGTGGATTCCGCTCTAAGCACAG
GCGGCGCGCGGGTTGCTTGTGACCGGCACTGTCGATTCACCAACTCCAGC
GGGGTGAAGCCAGGTTATTCGGATCGGGGAAACCTGGCAAATATGCTCCC
CTCGAGGAGAAGGAGGCCAAAATATCGGTTGGTCGTTTTCTCTTTCGTGT
CTTGAAGTTGTCCGCCATCCTCACCCCCCCCCTCATCCCTAACCGTGAGA
TCAGTGCCTTGACCGCCGTTACCCTAACTGTCTGATTTCCTTCGCTCTCT
CCGCCGATCTCCCCAGGGTCATGCTGCAGACTTGGCTTCAATCACTCTGC
ACCGCGGCGTCAACCAGCTACCCGGCTCTCCGCGTTCCCATGTACAACTT
CCTCGAGACCGCCCTCAACTACCCTCCCGATCTGATTGCCGTCCCCAACA
CGGCCGCCGCTACCAGCAGCGAGCTCTTGGCGGGAAGGATTCATACCAGA
AAACCGTACCCATTCCCGCGTGGCACAACCCCACACACCAACCTAGCTGG
AGCTGGGGATCAACGTACATCCCGCCCCGCACGCCAGCTGGGGCCGGGGC
GCACAACCCGTTCCTCTCCCCCCCACCCCGGTTTTCAACCCGGGTACGAG
ACCCCACGTACCCGAGGTCGCGGAGCGGGACGAGGCAGAGCCCGAGGGGG
GCGGGTAGAGGCAGGAGCAACACGGCCTAATGTGCGCAATCCGCACCAGC
GCAGGCAAGCCCGCCAACCACCCCTCTCTCCCCATGTGCCACAAGTGCGG
CCAACCCGGACATATCAGCGCAACTGCCCCAACTAAAATCAACAGACAGA
CGACAACGGCAGTAACGGGATGAACGAAGGGTCCCGGTTAGCACGGGCTG
CTTCAGATTGAATCAGCAGGAGCATGGAGGGTATGGACACGCCAACTCAG
TACAGTAGTTGGGTGGGGGGGAACCCACACCGAATTGGTGCCCACATTGC
GAGGAACCAGGGGTAGGATAAGGAACGGTATGACAAACGTCCTCGACCAC
TTGCGATACAGGTCTAGGAGCTACCGTAGCTACTCGTCGAGGTAGTCACG
CGGTTCCGATCGAGACCCCGGGTACCCCGGATGTCCCCGCGTACAAGGAA
ATAGGAAGCTAATAAATAAATACGTAACAAAATACTATTTGCACGAAAGA
GATGACCAGCACGTCCGCAATAAATAGACA
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Coding sequence (CDS) from alignment at H-elongata_contig12755:3217..5646-

>mRNA_H-elongata_contig12755.2037.1 ID=mRNA_H-elongata_contig12755.2037.1|Name=mRNA_H-elongata_contig12755.2037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig12755:3217..5646- (Himanthalia elongata Himel1 dioecious)
GGTATCATCGGAGCCGTCACTGTCGGAGCGACTGTCGCAGCGGTGGTCGC
TTCGCCTCGCCGCAGGGTATCATCGGAGCCGTCACTGTCGGAGCGACTGT
CGCAGCGGTGGTCGCTTCGCCTCGCCGCAGGTATCCGCCTCCTCGTGCCG
GCTACTATGTGGTACACTCTGCGGGAGAGTCGCCGAGAGCGGTTCGCGCC
GAAGAAGTGTCCTTCATAATCAGGCGCGTGCAAATCACGGCTCTTCAGCA
AGAGTCAGGAGGAGAGATCTTCTACCTGATCCAGGTATCCGCCTCCTCGT
GCCGGCTACTATGTGGTACACTCTGCGGGAGAGTCGCCGAGAGCGGTTCG
CGCCGAAGAAGTGTCCTTCATAATCAGGCGCGTGCAAATCACGGCTCTTC
AGCAAGAGTCAGGAGGAGAGATCTTCTACCTGATCCAGGTTACCATCAAC
GATGGTTACAAGTATTATGTGCTGAGGCGATACCATCAGTTTGACCAGCT
CAGAGCGCGCGTGGCGCCAATTGTACGCGTCGTGACCGCGCCCTTCCCGC
CTATGTTCGGCGTTCGAGCCTCCACCGTGGGACTGCAGCGGGCAAACATC
GAGGATCGCAAGTGGGTTACCATCAACGATGGTTACAAGTATTATGTGCT
GAGGCGATACCATCAGTTTGACCAGCTCAGAGCGCGCGTGGCGCCAATTG
TACGCGTCGTGACCGCGCCCTTCCCGCCTATGTTCGGCGTTCGAGCCTCC
ACCGTGGGACTGCAGCGGGCAAACATCGAGGATCGCAAGTGGGGTCATGC
TGCAGACTTGGCTTCAATCACTCTGCACCGCGGCGTCAACCAGCTACCCG
GCTCTCCGCGTTCCCATGTACAACTTCCTCGAGACCGCCCTCAACTACCC
TCCCGATCTGATTGCCGTCCCCAACACGGCCGCCGCTACCAGCAGCGAGC
TCTTGGCGGGAAGGATTCATACCAGAAAACCGTACCCATTCCCGCGTGGC
ACAACCCCACACACCAACCTAGCTGGAGCTGGGGATCAACGTACATCCCG
CCCCGCACGCCAGCTGGGGCCGGGGCGCACAACCCGTTCCTCTCCCCCCC
ACCCCGGTTTTCAACCCGGGTACGAGACCCCACGTACCCGAGGTCGCGGA
GCGGGACGAGGCAGAGCCCGAGGGGGGCGGGTAGAGGCAGGAGCAACACG
GCCTAAGGTCATGCTGCAGACTTGGCTTCAATCACTCTGCACCGCGGCGT
CAACCAGCTACCCGGCTCTCCGCGTTCCCATGTACAACTTCCTCGAGACC
GCCCTCAACTACCCTCCCGATCTGATTGCCGTCCCCAACACGGCCGCCGC
TACCAGCAGCGAGCTCTTGGCGGGAAGGATTCATACCAGAAAACCGTACC
CATTCCCGCGTGGCACAACCCCACACACCAACCTAGCTGGAGCTGGGGAT
CAACGTACATCCCGCCCCGCACGCCAGCTGGGGCCGGGGCGCACAACCCG
TTCCTCTCCCCCCCACCCCGGTTTTCAACCCGGGTACGAGACCCCACGTA
CCCGAGGTCGCGGAGCGGGACGAGGCAGAGCCCGAGGGGGGCGGGTAGAG
GCAGGAGCAACACGGCCTAA
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