mRNA_H-elongata_contig127497.2034.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI) HSP 1 Score: 154 bits (388), Expect = 8.270e-42 Identity = 70/88 (79.55%), Postives = 84/88 (95.45%), Query Frame = 1
Query: 1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
++ T+GVDFK+KT+V++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICLVGNKV
Sbjct: 82 KVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKV 169
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE) HSP 1 Score: 152 bits (384), Expect = 6.690e-41 Identity = 68/88 (77.27%), Postives = 83/88 (94.32%), Query Frame = 1
Query: 1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
++ T+GVDFK+KT+ ++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICL+GNKV
Sbjct: 972 KVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKV 1059
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA) HSP 1 Score: 126 bits (316), Expect = 9.800e-34 Identity = 58/87 (66.67%), Postives = 74/87 (85.06%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
+GTVGVDFK++T+ + E V+VQVWDTAGQ+RFHKITRAYYRGSHGI+L YDV +P TL+NI+YW+ +I++NA S V CLVGNK+
Sbjct: 32 VGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKM 117
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI) HSP 1 Score: 122 bits (307), Expect = 5.440e-31 Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
+GTVGVDFK++T+ + E++ VQVWDTAGQ+RFHKITRAYY G GI+L YDV +P TL+NI+YW+K+IR+NA S V+ CLVGNK
Sbjct: 285 VGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNA-SKDVRTCLVGNK 369
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6J0TE10_9SAUR (ras-related protein Rab-10-like isoform X1 n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TE10_9SAUR) HSP 1 Score: 107 bits (268), Expect = 2.630e-27 Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
+ TVG+DFKVKT+ ++D + +Q+WDTAGQ+RFH T +++RG+HG VLVYD+++PE+ IA+WMK I E A N V+I L+GNK
Sbjct: 49 LATVGIDFKVKTISLNDTTMKLQIWDTAGQERFHTFTTSFFRGAHGFVLVYDITNPESFQGIAHWMKDIHEKAEEN-VEIILLGNK 133
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A8K1CFC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFC2_PYTOL) HSP 1 Score: 112 bits (280), Expect = 5.060e-27 Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
+ T GVDFK++ + + DEE+ +Q+WDTAGQ+RFH+IT YY+G++GIVLVYDV+D ++ DN+ YWM +IR+ A + + LVGNK+
Sbjct: 384 LATAGVDFKLRNIALGDEEIALQIWDTAGQERFHRITATYYKGANGIVLVYDVTDKKSFDNVGYWMNNIRQYASPHMPAMLLVGNKI 470
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: E4X453_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X453_OIKDI) HSP 1 Score: 107 bits (266), Expect = 5.920e-27 Identity = 46/86 (53.49%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
I T+G+DFK+KTV + +++ +Q+WDTAGQ+RFH IT +YYRG++GI+LVYD++ P+T DNI+ W+++I E+A S V+ L+GNK
Sbjct: 46 ISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGANGILLVYDITQPKTFDNISKWLRNINEHA-SEDVERMLIGNK 130
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: C3ZRX8_BRAFL (Uncharacterized protein n=6 Tax=Chordata TaxID=7711 RepID=C3ZRX8_BRAFL) HSP 1 Score: 106 bits (265), Expect = 6.560e-27 Identity = 45/86 (52.33%), Postives = 71/86 (82.56%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
I T+G+DFK+KTV +H +++ +Q+WDTAGQ+RFH IT +YYRG+ GI+LVYD+++P++ DNI+ W+++I E+A + V+ L+GNK
Sbjct: 39 ISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKSFDNISKWLRNIDEHANED-VERMLIGNK 123
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A7M4E314_CROPO (RAB13, member RAS oncogene family n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E314_CROPO) HSP 1 Score: 105 bits (263), Expect = 8.570e-27 Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
I T+G+DFK++TV I +++ +QVWDTAGQ+RF IT AYYRG+ GI+LVYD++D ++ +NI WMKSIRENA + V+ L+GNK
Sbjct: 38 ISTIGIDFKIRTVEIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIRENASAG-VERLLLGNK 122
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A1J4KX29_9EUKA (Ras-related protein RIC1 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KX29_9EUKA) HSP 1 Score: 105 bits (262), Expect = 9.870e-27 Identity = 47/86 (54.65%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
I T+GVDFKVKT+ +H++ + +QVWDTAGQ+RF IT +YYRGS+GI++VYDV+D + D+++YW+K I + A N ++ LVGNK
Sbjct: 14 ISTIGVDFKVKTIEMHEKTIKLQVWDTAGQERFRNITSSYYRGSNGIIIVYDVTDRSSFDHVSYWLKEIDQLAAENVCRM-LVGNK 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig127497.2034.1 >prot_H-elongata_contig127497.2034.1 ID=prot_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLback to top mRNA from alignment at H-elongata_contig127497:519..1424- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig127497.2034.1 ID=mRNA_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig127497:519..1424- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig127497:519..1424- >mRNA_H-elongata_contig127497.2034.1 ID=mRNA_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig127497:519..1424- (Himanthalia elongata Himel1 dioecious)back to top |