mRNA_H-elongata_contig1274.2030.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: D7FVD9_ECTSI (Similar to Serine/threonine-protein kinase Sgk3 (Serum/glucocorticoid-regulated kinase 3) (Serum/glucocorticoid-regulated kinase-like) isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD9_ECTSI) HSP 1 Score: 272 bits (696), Expect = 3.780e-80 Identity = 149/196 (76.02%), Postives = 162/196 (82.65%), Query Frame = 2
Query: 674 ELVVSVPSYQEHLTSDGQRYTTYEIVVRMGGRQWSVRRRYSQFDQFRHSLRKQHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHPRPQEVDVFLAMDEHGAGVSARAGSRPIAWTTGNASPVSTTPTDPALGGSTWSGAGGAAAVLRLPSGPGVGPPAKGVTEHRKRIPRFPPLADQGRAEKAAVA 1261
EL +SVPS+QEHLT+DGQRYTTYE++VRMGGRQWSVR+RYSQFDQFR SLRKQHKEVGSFRFP+KSKFNTFAEHTKERRRTGFDEFLRLVA LHPRP+EVDVFLAMDEHGAGV R GSRP+AWT+ SP++ P PALG WSG+G RL SG GV KG T HR IPRFPPLADQGR EKAA A
Sbjct: 116 ELELSVPSHQEHLTADGQRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSLRKQHKEVGSFRFPHKSKFNTFAEHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEHGAGVRGRPGSRPLAWTSTKTSPLNPPP-GPALG-RVWSGSGRTNGGRRLASGSGVVRNPKGGTAHR--IPRFPPLADQGRNEKAAEA 307
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: A0A7S0XGX7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XGX7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.270e-18 Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query: 677 LVVSVPSYQEHLTSDGQRYTTYEIVVRM--GGRQWSVRRRYSQFDQFRHSLRKQHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHPRPQEVDVFLAMDEH 1000
L+VSVPS++E + S GQ T Y + + ++S+ +RYS+F Q ++ L++++ E+ SF+FPNKS FNT A TKERRR GFD+FL+++ P P E + FL ++EH
Sbjct: 1 LLVSVPSFEEQIDSHGQPVTYYVVHIESTTSNLRYSLMKRYSKFAQLKNLLKEKYPEMESFKFPNKSVFNTQAYFTKERRRQGFDDFLKMLCKTIPMPIEFEEFLELNEH 110
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: A0A836CA34_9STRA (PX domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA34_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.620e-14 Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 2
Query: 785 RRYSQFDQFRHSLRKQHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHPRPQEVDVFL 985
RRYS F+ R ++R H+ V F FP+KSKFNTFA+ TKERRRTGF++F+ L+ G RP EVD FL
Sbjct: 1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFL 67
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: A0A7S2CPX7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPX7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.820e-6 Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2
Query: 683 VSVPSYQEHLTSDGQRYTTYEIVVRMG-GRQWSVRRRYSQFDQFRHSLRKQHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHPRPQEV 973
++VP + E DG R+T Y + G W++ +RY+ L + ++ +RFP KS FNTFAE T+ERRR+GF++++ L+ ++ R +EV
Sbjct: 15 ITVPKWIEIEKEDGTRHTIYIFKAQAADGTTWTLEKRYTDVFDMHIRLFDTNPQISGYRFPKKSVFNTFAEFTRERRRSGFEDYMGLLLTMN-RVREV 111
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: A0A2T9YP72_9FUNG (PX domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YP72_9FUNG) HSP 1 Score: 54.3 bits (129), Expect = 7.290e-5 Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 2
Query: 671 DELVVSVPSYQEHLTSDGQ-RYTTYEIVVRMG-----GRQWSVRRRYSQFDQFRHSLRKQHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHP 958
+ L + V + Q H DG+ +YT YEI+ R + SVRRRYS+F+ FR +L+++ V P K N F++ E RR G + FL++VAG HP
Sbjct: 30 NSLEIEVVNPQTH--DDGKNKYTDYEIICRTNIPSFKFKNSSVRRRYSEFEWFRETLKREVAGVNIPNLPGKVLTNRFSDKVIEERREGLENFLQVVAG-HP 128
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Match: A0A7S3NQA4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQA4_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 9.770e-5 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 2
Query: 683 VSVPSYQEHLTSDGQRYTTYEI-VVRMGGRQWSVRRRYSQFDQFRHSLRK--QHKEVGSFRFPNKSKFNTFAEHTKERRRTGFDEFLRLVAGLHP 958
V VP Y + + GQ T Y I V+ G + +RYS +F + K H + F FP+KS FNT AE TKERRR+GF+E+ L+ L P
Sbjct: 15 VRVPKYVD-VDVGGQILTLYPIEVMYEDGNMRKLSKRYSDVLRFHKEVLKGASHPALEGFNFPHKSMFNTSAEFTKERRRSGFEEYFELLLRLGP 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1274.2030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1274.2030.1 >prot_H-elongata_contig1274.2030.1 ID=prot_H-elongata_contig1274.2030.1|Name=mRNA_H-elongata_contig1274.2030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=518bp MSDSQVELENYAANTSPLQGNARNDSAAPAVDAEDSLSSTAATRISAEQPback to top mRNA from alignment at H-elongata_contig1274:5436..16863+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1274.2030.1 ID=mRNA_H-elongata_contig1274.2030.1|Name=mRNA_H-elongata_contig1274.2030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=11428bp|location=Sequence derived from alignment at H-elongata_contig1274:5436..16863+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1274:5436..16863+ >mRNA_H-elongata_contig1274.2030.1 ID=mRNA_H-elongata_contig1274.2030.1|Name=mRNA_H-elongata_contig1274.2030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3108bp|location=Sequence derived from alignment at H-elongata_contig1274:5436..16863+ (Himanthalia elongata Himel1 dioecious)back to top |