mRNA_H-elongata_contig127324.2026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127324.2026.1
Unique NamemRNA_H-elongata_contig127324.2026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127324.2026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127324contigH-elongata_contig127324:175..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.400552-CDS-H-elongata_contig127324:174..5191622929755.400552-CDS-H-elongata_contig127324:174..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127324 175..519 +
1691679145.4288807-CDS-H-elongata_contig127324:174..5191691679145.4288807-CDS-H-elongata_contig127324:174..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127324 175..519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.413223-UTR-H-elongata_contig127324:519..5611622929755.413223-UTR-H-elongata_contig127324:519..561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127324 520..561 +
1691679145.4365406-UTR-H-elongata_contig127324:519..5611691679145.4365406-UTR-H-elongata_contig127324:519..561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127324 520..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127324.2026.1prot_H-elongata_contig127324.2026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127324 175..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127324.2026.1

>prot_H-elongata_contig127324.2026.1 ID=prot_H-elongata_contig127324.2026.1|Name=mRNA_H-elongata_contig127324.2026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
PPFLLQVPNESHGSKAAKYSITQDAVPSSVLFVQHLRHLSQQRTRAGTGA
PIPMVLVGEFIPAPPTGLVLPSTPASLFVCIHLSPTRTLLGTDLRSCRRH
GRPGRCCAPGTPQR*
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mRNA from alignment at H-elongata_contig127324:175..561+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127324.2026.1 ID=mRNA_H-elongata_contig127324.2026.1|Name=mRNA_H-elongata_contig127324.2026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig127324:175..561+ (Himanthalia elongata Himel1 dioecious)
CCTCCCTTCCTGCTGCAGGTCCCAAACGAGAGTCACGGGAGCAAGGCTGC
GAAATACTCTATCACTCAGGATGCGGTGCCCTCCTCAGTGCTCTTCGTGC
AGCACTTGCGGCATCTCTCGCAACAACGCACCCGGGCCGGCACAGGTGCT
CCCATTCCGATGGTTTTGGTGGGAGAGTTTATCCCCGCTCCACCCACCGG
GCTCGTTCTTCCATCCACTCCAGCATCTCTTTTCGTTTGTATTCATCTTT
CTCCCACTCGCACTCTCCTAGGCACTGATCTTCGCAGTTGTCGCAGACAT
GGTCGCCCAGGTCGCTGTTGTGCTCCAGGCACTCCGCAACGGTAGCGCGA
AGAAATCGACTCCTGTCCGCCGACTGATTTACTAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig127324:175..561+

>mRNA_H-elongata_contig127324.2026.1 ID=mRNA_H-elongata_contig127324.2026.1|Name=mRNA_H-elongata_contig127324.2026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig127324:175..561+ (Himanthalia elongata Himel1 dioecious)
CCTCCCTTCCTGCTGCAGGTCCCAAACGAGAGTCACGGGAGCAAGGCTGC
GAAATACTCTATCACTCAGGATGCGGTGCCCTCCTCAGTGCTCTTCGTGC
AGCACTTGCGGCATCTCTCGCAACAACGCACCCGGGCCGGCACAGGTGCT
CCCATTCCGATGGTTTTGGTGGGAGAGTTTATCCCCGCTCCACCCACCGG
GCTCGTTCTTCCATCCACTCCAGCATCTCTTTTCGTTTGTATTCATCTTT
CTCCCACTCGCACTCTCCTAGGCACTGATCTTCGCAGTTGTCGCAGACAT
GGTCGCCCAGGTCGCTGTTGTGCTCCAGGCACTCCGCAACGGTAGCCTCC
CTTCCTGCTGCAGGTCCCAAACGAGAGTCACGGGAGCAAGGCTGCGAAAT
ACTCTATCACTCAGGATGCGGTGCCCTCCTCAGTGCTCTTCGTGCAGCAC
TTGCGGCATCTCTCGCAACAACGCACCCGGGCCGGCACAGGTGCTCCCAT
TCCGATGGTTTTGGTGGGAGAGTTTATCCCCGCTCCACCCACCGGGCTCG
TTCTTCCATCCACTCCAGCATCTCTTTTCGTTTGTATTCATCTTTCTCCC
ACTCGCACTCTCCTAGGCACTGATCTTCGCAGTTGTCGCAGACATGGTCG
CCCAGGTCGCTGTTGTGCTCCAGGCACTCCGCAACGGTAG
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