mRNA_H-elongata_contig12721.2021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12721.2021.1
Unique NamemRNA_H-elongata_contig12721.2021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12721.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12721contigH-elongata_contig12721:5538..6326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.7813044-CDS-H-elongata_contig12721:5539..55691622929754.7813044-CDS-H-elongata_contig12721:5539..5569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12721 5540..5569 -
1691679145.1301444-CDS-H-elongata_contig12721:5539..55691691679145.1301444-CDS-H-elongata_contig12721:5539..5569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12721 5540..5569 -
1622929754.793443-CDS-H-elongata_contig12721:6041..63261622929754.793443-CDS-H-elongata_contig12721:6041..6326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12721 6042..6326 -
1691679145.1399994-CDS-H-elongata_contig12721:6041..63261691679145.1399994-CDS-H-elongata_contig12721:6041..6326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12721 6042..6326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12721.2021.1prot_H-elongata_contig12721.2021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12721 5540..6326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12721.2021.1

>prot_H-elongata_contig12721.2021.1 ID=prot_H-elongata_contig12721.2021.1|Name=mRNA_H-elongata_contig12721.2021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
RAQLVGANGQQMAIGRGVGAVIAAGGGQAFAGGMAAIGGAGGIAVGAGGG
TSGGVPAGPGMRGAPGQVLPPGYVRAIAQGATGAIMMGSHRGGAHYAQDL
TTARL
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mRNA from alignment at H-elongata_contig12721:5538..6326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12721.2021.1 ID=mRNA_H-elongata_contig12721.2021.1|Name=mRNA_H-elongata_contig12721.2021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig12721:5538..6326- (Himanthalia elongata Himel1 dioecious)
CGTGCACAGCTGGTGGGGGCAAACGGACAGCAGATGGCCATTGGGCGAGG
GGTTGGCGCTGTGATCGCGGCTGGCGGCGGGCAGGCCTTTGCAGGAGGTA
TGGCAGCGATCGGGGGAGCCGGAGGTATTGCTGTTGGCGCCGGTGGTGGC
ACCAGTGGAGGAGTGCCTGCGGGACCGGGAATGCGAGGGGCACCCGGTCA
AGTGCTGCCGCCGGGGTACGTGCGAGCGATAGCCCAGGGGGCGACGGGGG
CCATCATGATGGGCTCACATAGGGGAGGGGCGCACGTGAGTATGATTAGT
GTTTGTGGCTGTGTATTGTTCATTATTTAGACCTATCGATCGGTGTGCGT
TTCGGACTCTTTCAACAGAGGCGACGTGCGACCTGTTTGGGTTGTATTCA
TTGTTCGACCGTGTTGGGGGAGGGATCGCTTCTCTGGCGTTTTTGTCGGA
TAGATGATGGGGCGATCGCCTGCAGTGATGTGTGTTGGCCAATGCAAACC
AACGTGAACATTAATCGCTCGTCACGCAGAGAGTGTTTTTTTTTCTTCAC
GTGATCTTACCGTTCGTGAAAAACTCCCCCTGGCGGCTGGACTTTCGCCA
GCGACGAAAAGCACCCCATGATGAGATACTTAGAGCAGGGGGGGAGGTGG
GGAGGGTAATGGACGTCGTGTGTTGCTCTTTTCGGTTTATTCAAGAGAAA
CCTCCGTTTACCCCCCCCCGTTTAAATGTTTCACCCGTGTGGTGCTGACG
CGGGAAGTACGCCCAGGATTTAACAACCGCGAGACTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig12721:5538..6326-

>mRNA_H-elongata_contig12721.2021.1 ID=mRNA_H-elongata_contig12721.2021.1|Name=mRNA_H-elongata_contig12721.2021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig12721:5538..6326- (Himanthalia elongata Himel1 dioecious)
CGTGCACAGCTGGTGGGGGCAAACGGACAGCAGATGGCCATTGGGCGAGG
GGTTGGCGCTGTGATCGCGGCTGGCGGCGGGCAGGCCTTTGCAGGAGGTA
TGGCAGCGATCGGGGGAGCCGGAGGTATTGCTGTTGGCGCCGGTGGTGGC
ACCAGTGGAGGAGTGCCTGCGGGACCGGGAATGCGAGGGGCACCCGGTCA
AGTGCTGCCGCCGGGGTACGTGCGAGCGATAGCCCAGGGGGCGACGGGGG
CCATCATGATGGGCTCACATAGGGGAGGGGCGCACCGTGCACAGCTGGTG
GGGGCAAACGGACAGCAGATGGCCATTGGGCGAGGGGTTGGCGCTGTGAT
CGCGGCTGGCGGCGGGCAGGCCTTTGCAGGAGGTATGGCAGCGATCGGGG
GAGCCGGAGGTATTGCTGTTGGCGCCGGTGGTGGCACCAGTGGAGGAGTG
CCTGCGGGACCGGGAATGCGAGGGGCACCCGGTCAAGTGCTGCCGCCGGG
GTACGTGCGAGCGATAGCCCAGGGGGCGACGGGGGCCATCATGATGGGCT
CACATAGGGGAGGGGCGCACTACGCCCAGGATTTAACAACCGCGAGACTG
TACGCCCAGGATTTAACAACCGCGAGACTG
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