mRNA_H-elongata_contig127191.2019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127191.2019.1
Unique NamemRNA_H-elongata_contig127191.2019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127191.2019.1 vs. uniprot
Match: A0A6H5KTU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.110e-23
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:   31 RWAKHTDRTRAETVVAEREAALDKARVDAERERQAWESLEKSLKASAATREKEARETAEEEGREEIRTATAACRSAEEAAAGLRRQLARAEAETASAVVREQEAQ 345
            RWA+ TDR RA       +AALD AR +AERER+AWESL+ +L+ SAA RE+EARE+A+EEGREE+R+  AACRSA+EAA+ L  +LA+AE + A+AV+ +Q+AQ
Sbjct:  623 RWARDTDRARAAAAAVXXDAALDGARREAERERKAWESLQVALERSAAAREREARESAQEEGREEMRSMAAACRSAKEAASSLELRLAQAETDAAAAVLLQQQAQ 727
[Close]
BLAST of mRNA_H-elongata_contig127191.2019.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 5.890e-21
Identity = 59/105 (56.19%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:   31 RWAKHTDRTRAETVVAEREAALDKARVDAERERQAWESLEKSLKASAATREKEARETAEEEGREEIRTATAACRSAEEAAAGLRRQLARAEAETASAVVREQEAQ 345
            RWA+ TDR RA       + AL  AR +AERER+AWES++ +L+ SAA RE+EARE+A+EEGREE+R+  AACRSAEE A+ L  +LA+AE + A+AV+ +Q+AQ
Sbjct:  738 RWARDTDRARAXXXXXXXDEALAGARREAERERKAWESVQAALEGSAAAREREARESAQEEGREEMRSMAAACRSAEETASSLELRLAQAETDAAAAVLGQQQAQ 842
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127191.2019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTU3_9PHAE2.110e-2359.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK56_ECTSI5.890e-2156.19Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127191contigH-elongata_contig127191:403..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D7FK56
KEGG koko:K16475
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.7279787-CDS-H-elongata_contig127191:402..5251622929754.7279787-CDS-H-elongata_contig127191:402..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127191 403..525 -
1691679145.1072376-CDS-H-elongata_contig127191:402..5251691679145.1072376-CDS-H-elongata_contig127191:402..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127191 403..525 -
1622929754.7429547-CDS-H-elongata_contig127191:664..8861622929754.7429547-CDS-H-elongata_contig127191:664..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127191 665..886 -
1691679145.1181781-CDS-H-elongata_contig127191:664..8861691679145.1181781-CDS-H-elongata_contig127191:664..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127191 665..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127191.2019.1prot_H-elongata_contig127191.2019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127191 403..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127191.2019.1

>prot_H-elongata_contig127191.2019.1 ID=prot_H-elongata_contig127191.2019.1|Name=mRNA_H-elongata_contig127191.2019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MGWGWWGGTLRWAKHTDRTRAETVVAEREAALDKARVDAERERQAWESLE
KSLKASAATREKEARETAEEEGREEIRTATAACRSAEEAAAGLRRQLARA
EAETASAVVREQEAQ
back to top

mRNA from alignment at H-elongata_contig127191:403..886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127191.2019.1 ID=mRNA_H-elongata_contig127191.2019.1|Name=mRNA_H-elongata_contig127191.2019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=484bp|location=Sequence derived from alignment at H-elongata_contig127191:403..886- (Himanthalia elongata Himel1 dioecious)
ATGGGGTGGGGTTGGTGGGGCGGGACCCTCAGGTGGGCGAAGCACACCGA
CCGCACCAGGGCAGAGACGGTGGTGGCAGAAAGGGAGGCAGCGCTAGACA
AGGCCCGCGTGGACGCGGAGCGTGAGCGCCAGGCGTGGGAGTCCCTGGAG
AAGTCTCTGAAGGCGTCGGCGGCGACACGGGAGAAGGAGGCGAGGGAGAC
CGCCGAGGAGGAGGGGCGCGAAGTGAGAAGCGGCAGGTGGTATCTAGTAG
GTACTATTTTACTAGCAATACCAACCGCGCGGCTTCACGGAAGCTCGTGA
GTTATTTCTAAGAAATGGACTACCGCCGCCTCTATCAATGCGTGTGTCGA
TGGCGTTCAAGGAAATACGGACTGCGACGGCGGCCTGTCGATCGGCGGAG
GAAGCAGCTGCGGGTTTGCGGAGGCAATTGGCGCGGGCCGAGGCGGAAAC
GGCTTCAGCCGTGGTCCGAGAGCAAGAAGCCCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127191:403..886-

>mRNA_H-elongata_contig127191.2019.1 ID=mRNA_H-elongata_contig127191.2019.1|Name=mRNA_H-elongata_contig127191.2019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig127191:403..886- (Himanthalia elongata Himel1 dioecious)
ATGGGGTGGGGTTGGTGGGGCGGGACCCTCAGGTGGGCGAAGCACACCGA
CCGCACCAGGGCAGAGACGGTGGTGGCAGAAAGGGAGGCAGCGCTAGACA
AGGCCCGCGTGGACGCGGAGCGTGAGCGCCAGGCGTGGGAGTCCCTGGAG
AAGTCTCTGAAGGCGTCGGCGGCGACACGGGAGAAGGAGGCGAGGGAGAC
CGCCGAGGAGGAGGGGCGCGAAATGGGGTGGGGTTGGTGGGGCGGGACCC
TCAGGTGGGCGAAGCACACCGACCGCACCAGGGCAGAGACGGTGGTGGCA
GAAAGGGAGGCAGCGCTAGACAAGGCCCGCGTGGACGCGGAGCGTGAGCG
CCAGGCGTGGGAGTCCCTGGAGAAGTCTCTGAAGGCGTCGGCGGCGACAC
GGGAGAAGGAGGCGAGGGAGACCGCCGAGGAGGAGGGGCGCGAAGAAATA
CGGACTGCGACGGCGGCCTGTCGATCGGCGGAGGAAGCAGCTGCGGGTTT
GCGGAGGCAATTGGCGCGGGCCGAGGCGGAAACGGCTTCAGCCGTGGTCC
GAGAGCAAGAAGCCCAGGAAATACGGACTGCGACGGCGGCCTGTCGATCG
GCGGAGGAAGCAGCTGCGGGTTTGCGGAGGCAATTGGCGCGGGCCGAGGC
GGAAACGGCTTCAGCCGTGGTCCGAGAGCAAGAAGCCCAG
back to top