mRNA_H-elongata_contig127115.2013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127115.2013.1
Unique NamemRNA_H-elongata_contig127115.2013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A6H5JCB9_9PHAE (ENTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCB9_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 VRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            VRKLW K+  KEWR + KALY++HRFAADG  +HA NLKESVAVLRTHHDSRRKV +
Sbjct:  306 VRKLWSKMADKEWRVSAKALYILHRFAADGSIEHASNLKESVAVLRTHHDSRRKVNY 362          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.290e-11
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLW K+  K+WR  +KALY++HRF+ADG  DHA  LK  V  LR   D +RK +F
Sbjct:   80 AVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKF 138          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A6S8JKL4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKL4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.650e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLWGK+  K+WR  +KALYV+HRF+ADG  +HA +LK  +  LR   D +RK +F
Sbjct:  149 AVLRKLWGKMCEKDWRTTMKALYVLHRFSADGAPEHAASLKARLRELRRTKDPKRKDKF 207          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-10
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLW K+  K+WR  +KALY++HRF+ADG  +HA  LK  V  LR   D +RK +F
Sbjct:  270 AVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKF 328          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A1Z5K193_FISSO (ENTH domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K193_FISSO)

HSP 1 Score: 64.3 bits (155), Expect = 3.080e-10
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRFSPTVRCL 234
            A +RKLWGK+  ++WR  +KA+Y++HRF+ADG  +HA  LK  +  LR   D +RK +F  T + L
Sbjct:  268 AVLRKLWGKMVERDWRTTMKAVYIMHRFSADGAPEHAAALKARLRELRRTRDPKRKDKFFNTKQLL 333          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.160e-10
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLW K+  K+WR  +KALYV+HRF+ADG  DH   LK  +  LR   D +RK ++
Sbjct:  125 AVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKY 183          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A7S2EXR9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXR9_TRICV)

HSP 1 Score: 63.2 bits (152), Expect = 7.700e-10
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RK+W K+T K+WR  VKALYV+HRF++DG  DH   LK  +  LR   D +RK ++
Sbjct:  146 AVLRKVWAKMTEKDWRTKVKALYVLHRFSSDGAPDHQAALKARLRELRRTRDPKRKEKY 204          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A7S3VA38_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VA38_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.080e-9
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLW K+  K+WR  +KALY++HRF+ADG  DH   LK  +  LR   D +RK ++
Sbjct:  289 AVLRKLWSKMIEKDWRTTIKALYILHRFSADGAPDHQAALKARLRELRRTRDPKRKEKY 347          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A7S4NIW1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NIW1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-9
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   37 AQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRKVRF 213
            A +RKLW K+T K+WR   KALY++HRF++DG  DH   LK  +  LR   D +RK ++
Sbjct:  269 AVLRKLWAKMTEKDWRTKTKALYILHRFSSDGAPDHQAALKARLRELRRTRDPKRKEKY 327          
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Match: A0A7S1UBW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBW5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.850e-6
Identity = 21/54 (38.89%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   43 VRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAINLKESVAVLRTHHDSRRK 204
            ++KLW ++  ++WR A+KA Y++H+FAADG   H++ LK++ A +   + +R K
Sbjct:  156 LKKLWNRMLEEDWRTALKATYMLHKFAADGAPQHSVELKKTFASMARQYCARHK 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127115.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JCB9_9PHAE1.420e-1973.68ENTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1E7FBW9_9STRA3.290e-1152.54ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6S8JKL4_9STRA4.650e-1152.54Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZTH1_9STRA1.210e-1050.85ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A1Z5K193_FISSO3.080e-1045.45ENTH domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7R9ZH59_9STRA4.160e-1049.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2EXR9_TRICV7.700e-1049.15Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3VA38_9STRA1.080e-947.46Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S4NIW1_9STRA1.470e-947.46Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1UBW5_9STRA1.850e-638.89Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127115contigH-elongata_contig127115:448..681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog2880.D7FQ31
EggNOG OGs2ECB5@1,2SI7J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.1554496-CDS-H-elongata_contig127115:447..6811622929754.1554496-CDS-H-elongata_contig127115:447..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127115 448..681 +
1691679144.8781319-CDS-H-elongata_contig127115:447..6811691679144.8781319-CDS-H-elongata_contig127115:447..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127115 448..681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127115.2013.1prot_H-elongata_contig127115.2013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127115 448..681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127115.2013.1

>prot_H-elongata_contig127115.2013.1 ID=prot_H-elongata_contig127115.2013.1|Name=mRNA_H-elongata_contig127115.2013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
SYSLGWRWGGGGAQVRKLWGKVTAKEWRGAVKALYVVHRFAADGDGDHAI
NLKESVAVLRTHHDSRRKVRFSPTVRCL
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mRNA from alignment at H-elongata_contig127115:448..681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127115.2013.1 ID=mRNA_H-elongata_contig127115.2013.1|Name=mRNA_H-elongata_contig127115.2013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig127115:448..681+ (Himanthalia elongata Himel1 dioecious)
TCTTATTCACTGGGGTGGCGTTGGGGGGGGGGGGGAGCACAGGTGAGGAA GCTGTGGGGAAAGGTGACAGCCAAGGAGTGGCGGGGGGCTGTGAAGGCGC TCTACGTGGTGCACCGCTTCGCCGCCGATGGCGACGGCGATCATGCTATC AACCTTAAGGAGTCCGTGGCGGTGCTCAGAACTCACCACGACTCTCGCCG CAAGGTCAGGTTCTCTCCGACGGTCCGCTGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig127115:448..681+

>mRNA_H-elongata_contig127115.2013.1 ID=mRNA_H-elongata_contig127115.2013.1|Name=mRNA_H-elongata_contig127115.2013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig127115:448..681+ (Himanthalia elongata Himel1 dioecious)
TCTTATTCACTGGGGTGGCGTTGGGGGGGGGGGGGAGCACAGGTGAGGAA
GCTGTGGGGAAAGGTGACAGCCAAGGAGTGGCGGGGGGCTGTGAAGGCGC
TCTACGTGGTGCACCGCTTCGCCGCCGATGGCGACGGCGATCATGCTATC
AACCTTAAGGAGTCCGTGGCGGTGCTCAGAACTCACCACGACTCTCGCCG
CAAGGTCAGGTTCTCTCCGACGGTCCGCTGCCTCTCTTATTCACTGGGGT
GGCGTTGGGGGGGGGGGGGAGCACAGGTGAGGAAGCTGTGGGGAAAGGTG
ACAGCCAAGGAGTGGCGGGGGGCTGTGAAGGCGCTCTACGTGGTGCACCG
CTTCGCCGCCGATGGCGACGGCGATCATGCTATCAACCTTAAGGAGTCCG
TGGCGGTGCTCAGAACTCACCACGACTCTCGCCGCAAGGTCAGGTTCTCT
CCGACGGTCCGCTGCCTC
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