mRNA_H-elongata_contig127022.2007.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127022.2007.1
Unique NamemRNA_H-elongata_contig127022.2007.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KLF2_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.420e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK G      +    KE HR  LD+IL+RQ
Sbjct:  282 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQ 346
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.700e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK G      +    KE HR  LD+IL+RQ
Sbjct:   17 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQ 81
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.710e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK G      +    KE HR  LD+IL+RQ
Sbjct:  155 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQ 219
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.720e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK G      +    KE HR  LD+IL+RQ
Sbjct:  267 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQ 331
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.730e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK G      +    KE HR  LD+IL+RQ
Sbjct:  388 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQ 452
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.380e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK GG    F     K   ++RLD+IL+RQ
Sbjct:   95 AKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQ 159
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.530e-11
Identity = 27/67 (40.30%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQ 201
             +++G YGRD++N+NG RLL   ++++LS+ NT+F TPK G      T++   +  ++ LD+IL+RQ
Sbjct:   95 AKIMGAYGRDSMNNNGERLLGPASDNQLSLTNTYFRTPKGGVQH---TFQSSNKGKKYHLDFILMRQ 158
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KST1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.890e-10
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGP-KESHRWRLDYILVRQ 201
             +++G YGR+ +N+NG RLL   ++++L++ NT+F TPK GG     T++   K   ++RLD+IL+ Q
Sbjct:  250 AKIMGAYGREIMNNNGERLLGLASDNQLALTNTYFRTPKGGGQH---TFQSSNKGKDKYRLDFILMSQ 314
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A183TEJ8_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TEJ8_SCHSO)

HSP 1 Score: 58.5 bits (140), Expect = 5.200e-9
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYEGPKESHRWRL-DYILVRQ 201
            V+VLGP+G  + NDNG   L   AEH++ + NTFF  P R    D  T+  P+ S RW+L DY++VR+
Sbjct:    8 VKVLGPHGLGSFNDNGLLHLRTCAEHQVLLTNTFFRLPTR----DKVTWMQPR-SRRWQLLDYVVVRR 70
[Close]
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.340e-8
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPK 117
             +++G YGRD +N+NG RLL   A+++LS++NT+F TPK
Sbjct:   95 AKIMGAYGRDVMNNNGERLLGLAADNRLSLINTYFRTPK 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127022.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KLF2_9PHAE4.420e-1246.27DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8Z5_9PHAE4.700e-1246.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE4.710e-1246.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE4.720e-1246.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE4.730e-1246.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KL25_9PHAE6.380e-1246.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5Z5_9PHAE5.530e-1140.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KST1_9PHAE8.890e-1039.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A183TEJ8_SCHSO5.200e-945.59Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A6H5KDU8_9PHAE3.340e-851.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127022contigH-elongata_contig127022:8..208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.7494895-CDS-H-elongata_contig127022:7..2081622929753.7494895-CDS-H-elongata_contig127022:7..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127022 8..208 -
1691679144.7007875-CDS-H-elongata_contig127022:7..2081691679144.7007875-CDS-H-elongata_contig127022:7..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127022 8..208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127022.2007.1prot_H-elongata_contig127022.2007.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127022 8..208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127022.2007.1

>prot_H-elongata_contig127022.2007.1 ID=prot_H-elongata_contig127022.2007.1|Name=mRNA_H-elongata_contig127022.2007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
VRVLGPYGRDTLNDNGSRLLACTAEHKLSIVNTFFSTPKRGGNSDAFTYE
GPKESHRWRLDYILVRQ
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mRNA from alignment at H-elongata_contig127022:8..208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127022.2007.1 ID=mRNA_H-elongata_contig127022.2007.1|Name=mRNA_H-elongata_contig127022.2007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig127022:8..208- (Himanthalia elongata Himel1 dioecious)
GTTCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGGGTC
GCGACTTCTAGCATGTACTGCCGAGCACAAGCTGTCGATTGTCAACACCT
TTTTCAGTACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATACGAG
GGGCCGAAGGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACGCCA
G
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Coding sequence (CDS) from alignment at H-elongata_contig127022:8..208-

>mRNA_H-elongata_contig127022.2007.1 ID=mRNA_H-elongata_contig127022.2007.1|Name=mRNA_H-elongata_contig127022.2007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig127022:8..208- (Himanthalia elongata Himel1 dioecious)
GTTCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGGGTC
GCGACTTCTAGCATGTACTGCCGAGCACAAGCTGTCGATTGTCAACACCT
TTTTCAGTACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATACGAG
GGGCCGAAGGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACGCCA
GGTTCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGGGT
CGCGACTTCTAGCATGTACTGCCGAGCACAAGCTGTCGATTGTCAACACC
TTTTTCAGTACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATACGA
GGGGCCGAAGGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACGCC
AG
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