mRNA_H-elongata_contig127018.2006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127018.2006.1
Unique NamemRNA_H-elongata_contig127018.2006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127018.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127018contigH-elongata_contig127018:1224..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.7109642-CDS-H-elongata_contig127018:1223..15001622929753.7109642-CDS-H-elongata_contig127018:1223..1500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127018 1224..1500 +
1691679144.6790366-CDS-H-elongata_contig127018:1223..15001691679144.6790366-CDS-H-elongata_contig127018:1223..1500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127018 1224..1500 +
1622929753.7202885-CDS-H-elongata_contig127018:1524..16371622929753.7202885-CDS-H-elongata_contig127018:1524..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127018 1525..1637 +
1691679144.6887312-CDS-H-elongata_contig127018:1524..16371691679144.6887312-CDS-H-elongata_contig127018:1524..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127018 1525..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127018.2006.1prot_H-elongata_contig127018.2006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127018 1224..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127018.2006.1

>prot_H-elongata_contig127018.2006.1 ID=prot_H-elongata_contig127018.2006.1|Name=mRNA_H-elongata_contig127018.2006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MKEQARRALCRWARSNRPVYEAYSVLVEKANKVSLRKGEAIAYHFESISA
DEASNGVNPDNRGGVVGAMRSVLESLLRLLGNRMTALKRARHISSASPTL
SGEGDMEEGLEQVVLSPTHVLLQQQSQHQQ
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mRNA from alignment at H-elongata_contig127018:1224..1637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127018.2006.1 ID=mRNA_H-elongata_contig127018.2006.1|Name=mRNA_H-elongata_contig127018.2006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig127018:1224..1637+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGCAAGCTCGTCGTGCTCTCTGCCGCTGGGCCAGATCGAACCG
ACCAGTTTATGAGGCGTATTCAGTCCTCGTTGAAAAGGCAAATAAGGTCT
CCCTGAGAAAGGGCGAGGCTATCGCTTATCACTTTGAATCGATTTCTGCC
GACGAAGCCAGCAACGGCGTCAATCCCGACAACCGCGGTGGGGTGGTTGG
GGCGATGCGGTCAGTCTTGGAGTCTCTTCTCCGGCTGTTGGGGAATCGAA
TGACCGCGCTCAAGCGCGCGAGACATATGCCAAGCGACGCAGCATCAACG
GTCTCATCAGCTTCACCAACGCTTAGTGGAGAAGGGGACATGGAGGAGGG
ACTTGAACAGGTGGTGCTTTCGCCGACTCATGTTCTCCTGCAGCAGCAAT
CGCAACATCAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig127018:1224..1637+

>mRNA_H-elongata_contig127018.2006.1 ID=mRNA_H-elongata_contig127018.2006.1|Name=mRNA_H-elongata_contig127018.2006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig127018:1224..1637+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGCAAGCTCGTCGTGCTCTCTGCCGCTGGGCCAGATCGAACCG
ACCAGTTTATGAGGCGTATTCAGTCCTCGTTGAAAAGGCAAATAAGGTCT
CCCTGAGAAAGGGCGAGGCTATCGCTTATCACTTTGAATCGATTTCTGCC
GACGAAGCCAGCAACGGCGTCAATCCCGACAACCGCGGTGGGGTGGTTGG
GGCGATGCGGTCAGTCTTGGAGTCTCTTCTCCGGCTGTTGGGGAATCGAA
TGACCGCGCTCAAGCGCGCGAGACATAATGAAGGAGCAAGCTCGTCGTGC
TCTCTGCCGCTGGGCCAGATCGAACCGACCAGTTTATGAGGCGTATTCAG
TCCTCGTTGAAAAGGCAAATAAGGTCTCCCTGAGAAAGGGCGAGGCTATC
GCTTATCACTTTGAATCGATTTCTGCCGACGAAGCCAGCAACGGCGTCAA
TCCCGACAACCGCGGTGGGGTGGTTGGGGCGATGCGGTCAGTCTTGGAGT
CTCTTCTCCGGCTGTTGGGGAATCGAATGACCGCGCTCAAGCGCGCGAGA
CATATCTCATCAGCTTCACCAACGCTTAGTGGAGAAGGGGACATGGAGGA
GGGACTTGAACAGGTGGTGCTTTCGCCGACTCATGTTCTCCTGCAGCAGC
AATCGCAACATCAGCAGTCTCATCAGCTTCACCAACGCTTAGTGGAGAAG
GGGACATGGAGGAGGGACTTGAACAGGTGGTGCTTTCGCCGACTCATGTT
CTCCTGCAGCAGCAATCGCAACATCAGCAG
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