mRNA_H-elongata_contig127.2005.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI) HSP 1 Score: 53.5 bits (127), Expect = 2.420e-6 Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 240
W+ DSGA+ H+ SD + ++ TP + + DG+R+ V+ G + + ++ I+L +V HVPD KFNL S HK+
Sbjct: 277 WLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVV------KLNDEISLLNVLHVPDFKFNLISVHKL 349
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA) HSP 1 Score: 52.4 bits (124), Expect = 6.270e-6 Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 246
W DSGAS H+T+DAS +++ P G +V ++GT L + +G ++ H S + ++L ++ HVP + NL S K Q
Sbjct: 322 WYPDSGASHHITNDASNLHS-HQPYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSKCAQ 400
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA) HSP 1 Score: 50.8 bits (120), Expect = 2.100e-5 Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 246
WI DSGAS HMT +AS +++ P +V +DGT V IG+I + +TL +V +VP L NL S K+ Q
Sbjct: 74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKLTQ 148
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO) HSP 1 Score: 50.8 bits (120), Expect = 2.200e-5 Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 240
W DSGAS HM +D ++++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HK+
Sbjct: 271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO) HSP 1 Score: 50.8 bits (120), Expect = 2.250e-5 Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 240
W DSGAS HM +D ++++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HK+
Sbjct: 271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA) HSP 1 Score: 50.8 bits (120), Expect = 2.260e-5 Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 246
WI DSGAS HMT +AS +++ P +V +DGT V IG++ + + ITL +V HVP L NL S K+ Q
Sbjct: 95 WIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKLTQ 169
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA) HSP 1 Score: 50.4 bits (119), Expect = 3.040e-5 Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 237
W DSGAS H+T+DAS + VR P G+ V T++GT L ++ +G ++ + + + L + HVP + NL S K
Sbjct: 310 WYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A803LZV8_CHEQI (Retrotran_gag_3 domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LZV8_CHEQI) HSP 1 Score: 49.7 bits (117), Expect = 5.510e-5 Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 240
WI DSGA+ H+ S+ S + + + +DG + VE IG + + D I L +V HVP LKFNL S HK+
Sbjct: 367 WIVDSGATDHICSNLSLFESYKCFDKTPSTITIADGKHVTVEHIGTV------QFDNGIVLQNVLHVPGLKFNLISTHKL 440
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A0A9SPJ8_ARUDO (gag_pre-integrs domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9SPJ8_ARUDO) HSP 1 Score: 49.3 bits (116), Expect = 7.100e-5 Identity = 30/76 (39.47%), Postives = 40/76 (52.63%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFS 228
W+ DSGAS HMT DAS + +P V T+DGT + V G + S + ++ DV+HVP L LFS
Sbjct: 86 WVLDSGASFHMTPDASSLTTTGSPVHSI-SVQTADGTSMPVTYQGTL-------STQNFSVPDVAHVPQLAMQLFS 153
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Match: A0A2N9II60_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9II60_FAGSY) HSP 1 Score: 49.3 bits (116), Expect = 7.900e-5 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1 WIRDSGASCHMTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 240
W+ D+GAS H+TS+AS + + TP G +V +G L ++ IGN + H + + L +V H+P + NL S HK+
Sbjct: 357 WLTDTGASDHITSNASNLSSP-TPYQGSEQVTVGNGQHLPIQSIGNTHL--HTQYHK-FQLSNVLHIPRIASNLISVHKL 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig127.2005.1 >prot_H-elongata_contig127.2005.1 ID=prot_H-elongata_contig127.2005.1|Name=mRNA_H-elongata_contig127.2005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MTSDASKMYNVRTPPFGKHEVMTSDGTRLWVECIGNIDVVFHGRSDEPITback to top mRNA from alignment at H-elongata_contig127:26746..26997+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig127.2005.1 ID=mRNA_H-elongata_contig127.2005.1|Name=mRNA_H-elongata_contig127.2005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig127:26746..26997+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig127:26746..26997+ >mRNA_H-elongata_contig127.2005.1 ID=mRNA_H-elongata_contig127.2005.1|Name=mRNA_H-elongata_contig127.2005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig127:26746..26997+ (Himanthalia elongata Himel1 dioecious)back to top |