mRNA_H-elongata_contig12695.1999.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12695.1999.1
Unique NamemRNA_H-elongata_contig12695.1999.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: D7FQG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG5_ECTSI)

HSP 1 Score: 661 bits (1706), Expect = 2.090e-227
Identity = 345/443 (77.88%), Postives = 377/443 (85.10%), Query Frame = 1
Query:    1 MQRIPPALLASYRALYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSS-DQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGR---------GGRGAGAKRSRAG--ADR-HLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQ----AITRMLGWDCLRACWLKSCLAARSDHDRHLLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEMAEEACTEGGELDEGVSV 1278
            MQR+PPA+LASYRALYVVLRG AA AE+EINRDI+RTVRG TGLLLD SS D R + AGSINRVLNALAHVDNM YCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGH HG+YRKEV ML GYMDK E QLR RLP LAAHFEAEHYPPPLYALEW+TT FGLAAQPL+SLVALDL LAGARNPVLRLCVSLLG ME+ LL LDQEGLL++FRSRAV VDAE VIVRAL DGG+         GG G  AKRS  G  AD   LGWSTGPDYLLVLRSR+C+T+GLVELREEA+  L+V H++LQ    A+TR LGWD LR CWL++CLAARSDH+RH LAS+ALRFVIANGGH KAA+FMLGVGGADAN VD  LL+PLHL  ++NRPD+ RVLLMCGASPRL GGVTR AAAR GKLWSPLEMAEEACTEGG LD+G ++
Sbjct:    1 MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAHVDNMGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFRSRAVGVDAEGVIVRALSDGGKRGGGGDSPSGGEGVEAKRSSEGGVADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDGAAL 443          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A6G0X0L2_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0L2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.090e-32
Identity = 114/383 (29.77%), Postives = 186/383 (48.56%), Query Frame = 1
Query:   82 EEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWDCLRACWLKSCLAARSDHDRH-LLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEM 1227
            E ++RD+ RT      +L D   D    +  +++RVLNA+A  +   YCQG N++  V +  GL E +++  FLYLL+  HL   Y++    L  Y+  F++QL++ LP+LA   EA  +   LY +EW TT+F  +++  +    LD++L   ++ + R+ ++LL  +E  L+ L  E LL +F+      D  +VI+ AL              S A    H+   T P  +L   +R         L+ +     + H T     +             +   A ++D + H ++A+E L   I  G H   AAF +    AD N  D   + PLH A + N+PD+VR+LL+ GA+    GG T +A  R   + +PLE+
Sbjct:   65 EYVDRDVPRTF-----VLFDLPHDTT-PMEPALHRVLNAIAEAEE-GYCQGMNFIAAVFLVQGLSEEDSYITFLYLLKHKHLSQFYKESSIFLNEYLALFQDQLKIYLPELAERLEACGFSVYLYGIEWFTTIFSCSSKLDLCRAVLDMILVDVQDVMFRVGLALLKNVESQLMDLQFEDLLHQFKQIVKQADTYQVILDAL--------------SMA---PHV---TSPGGILAKTARK-------SLQPQGNWPFIRHRTLGPVFSEACKDGSFNKSHWEEWKATQNDPEAHQVIANEILHQAIWYG-HLHIAAFAIHTCQADLNESDDFGIQPLHFAIVRNQPDIVRLLLVEGANLNSPGGNT-IAMERALFMKTPLEL 411          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A1V9Y8V1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8V1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.580e-25
Identity = 104/363 (28.65%), Postives = 171/363 (47.11%), Query Frame = 1
Query:  184 RVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWD-------CLRACWLKSCLAARSDH---DRH-----LLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEM 1227
            RVLNA+A  ++  YCQG N++  V ++AGLPE + +  F+YLL   ++   Y+     L  Y+ +F+ ++   LP+LAA  E+  +   LY +EW TTLF  +++  ++   +DL+LA   + + R+ ++LL   EE L+ ++ + LL +F+     VD  ++I  AL                     H G S+                G++++   A++TL      ++  T  + WD         + C+L       +     DR      ++A+EAL   I  G  A    F L +G A  N  D   L PLH A + N+PD VR+L   GA   L GG + V    +  + SP+E+
Sbjct:   93 RVLNAVARAED-GYCQGMNFIAAVFLEAGLPEEDAYSTFVYLLHHKYMSQFYKDSSIFLNEYLKQFQARVHELLPELAARLESCGFEVYLYGIEWFTTLFSCSSKIDLTHAVIDLILANVTDVMFRVGIALLKNCEEQLMSMNFDDLLRDFKVITKQVDTYQIICDALT-----------------IPPHPGASSYG--------------GILQMT--AKQTLPQWWPFVKRCTVSVEWDKAIEFGSVAKICFLWEAWQRTTSKWPLDRRNIANTVIANEALCLAIWYGSIA-VGVFALEMG-AQVNDPDEWGLRPLHFAVVRNQPDFVRLLWRSGADVNLRGGNSSVIVP-QWYMKSPVEL 418          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A485KXF4_9STRA (Aste57867_12889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXF4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.730e-24
Identity = 101/387 (26.10%), Postives = 165/387 (42.64%), Query Frame = 1
Query:   82 EEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWDCLRACWLKSCLAARSDHDRHLLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEMAEEAC 1242
            E + RD+ RT      +L +   D    +  ++ RVLNA++  ++  YCQG N++  V +  G+ E + +  +LYLL+  +L   Y+     L  Y+ +F  Q    LP+LA+  +A  +   LY +EW TT+F  +++  +    LD++L   ++ + R+ ++LL  +E  L+ L  E LL +F+      D  +V++ AL     GG  A   R     D    W                               + H T   A++R        A       A  S     ++A+E L + +  G H       +     D N  D   L PLH A + N  DVVR LL  GA   + GG    A  R   + SP ++++  C
Sbjct:   68 EHVERDVPRTY-----VLFELPHDTTA-MEPALRRVLNAISEAED-GYCQGMNFIAAVFLVEGMSEEDAYITYLYLLKHKYLSQFYKDSSVFLNEYLLQFHAQFAALLPELASRLDACGFSVYLYGVEWFTTIFSCSSKMDLCHAVLDMILVDVQDVMFRVGLALLKNVESQLMDLQFEDLLHQFKHIVKQADTYQVVMDALAMPTFGGMLAKTARRTFNPDGS--WP-----------------------------FIRHRTLGPAMSRACEDGRFSAQQWTDWAATASPEASAVVANEILHYAVWYG-HVHLVTLAIDTCKVDVNASDDFALRPLHFAVVRNHVDVVRCLLAAGADMHVRGG-NSAAMERGLVMISPAQLSQRWC 414          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A6G0XPR2_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPR2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-12
Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLL--RQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRAL 687
            E+ I RDI RT      L  D +S  +  L      VL A +  D N+ YCQG  ++   +  + +PE +TF   +  L  ++  +  IYR  +P +V  M  F++ L++ +PKLA H +AE   P +YA +W  T+F  +          D+ L      V R+ V+LL   E  L+ L  E ++E FR    +VD +EV+  A+
Sbjct:  155 EDTILRDIGRTFPK-HHLFKDSTSIGQSALLN----VLKAYSVYDPNVGYCQGMGFI-SALFLSYMPEEQTFWHLVACLNHKKYGMADIYRPGMPRVVEIMAIFDQCLKIYVPKLAEHLDAEGLHPTMYATQWFVTIFAYSFPFDFVTRVWDIFLHEGWKIVFRVTVALLKVNERKLMTLKFEKIMEFFRDMPPSVDTDEVVATAV 354          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A1V9ZMJ4_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMJ4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.850e-11
Identity = 60/202 (29.70%), Postives = 98/202 (48.51%), Query Frame = 1
Query:   79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGH--LHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVI 675
            EE I+RDI RT             D +    G+++ +L A +  D ++ YCQG  ++   +  + +PE +TF   +  L Q    L  +YR  +P +V  +  F+  +RL LP LA H +AE   P ++A +W  TLF  +    +     D+ L      V R+ V+LL   E+ LL    E ++E F+     VD ++V+
Sbjct:  147 EETISRDIGRTFPKH-----HLFKDAQSIGQGALSNILKAYSVYDPDVGYCQGMGFI-SALFLSYMPEEQTFWQLVACLNQKKFGLADLYRPGMPRVVEVIAIFDACVRLYLPALARHLDAEGLHPTMFATQWFVTLFAYSFPFELVTRVWDVFLHEGWKIVYRVAVALLKLSEKALLAKKFEKIMEFFKELPTLVDTKQVL 342          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A163K2R5_ABSGL (Rab-GAP TBC domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163K2R5_ABSGL)

HSP 1 Score: 72.8 bits (177), Expect = 4.750e-10
Identity = 54/184 (29.35%), Postives = 91/184 (49.46%), Query Frame = 1
Query:   79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLL 627
            E+ I RD+ RT    T     F  ++ G+    +  VL A +  D  + YCQG  +VV  ++   +PE   FC+ + L+    L G +  ++ +L   M +F++ L++ LP +  H EA+   P +YA +W  TLF       +    LD+V       +L + ++L+   +  LL L+ EGLL
Sbjct:  341 EKVIQRDLARTFPTHT-----FFRERDGQ--EMLFDVLRAYSLYDPQVGYCQGLPFVVGCLLLQ-VPEETAFCVLIDLMNNYGLRGHFTPKMELLHERMFQFDDLLKVHLPIIHRHLEAQGVRPTMYASQWFMTLFAYRCPLELVFRVLDMVFTQGTCIILNVALALMQKNQSTLLSLEFEGLL 516          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A0K8TSK8_TABBR (Putative rab gtpase-activating protein 1-like isoform x3 n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TSK8_TABBR)

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-9
Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 1
Query:   43 LYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
            LY +L       E  I RDI RT             +  G    ++ +V  A A  D  + YCQG +++   ++   +PE ++FC+ + L+    L  +Y+     L   + +    ++ +LPKL  HFE       ++A +W  TLF            LD+ L      + ++ ++LL   E DL+KLD EG+L+ FR
Sbjct:  631 LYRILITKETKCENVIQRDIHRTFPAN-----QLFKESGGSGQDALFKVSKAYAVYDAEVGYCQGLSFIAASLL-LHMPEEDSFCVLVALMYDYGLRDLYKHGFENLYMRLYQLSRLMKDQLPKLYEHFEKTGVETHMFASQWFLTLFTARFPLYFVFHVLDVFLLDGMPILFQVAITLLSVCENDLIKLDFEGILKYFR 824          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A7S0PBW2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PBW2_CAFRO)

HSP 1 Score: 66.6 bits (161), Expect = 6.190e-9
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  175 SINRVLNALAHVDN-MSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDK---FEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
            S+ RVL A A  D+ + YCQG  ++  V++    PE + F L L+ L +   + + R  +P L     +    E  LR   P+ AAH EA+H  P ++A  W+ T F  +    ++    D ++A    PV+R+ V+++      + KL+ EG+L   R
Sbjct:    6 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAF-LMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 162          
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A5A8DQX2_CAFRO (Rab-GAP TBC domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQX2_CAFRO)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  175 SINRVLNALAHVDN-MSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDK---FEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
            S+ RVL A A  D+ + YCQG  ++  V++    PE + F L L+ L +   + + R  +P L     +    E  LR   P+ AAH EA+H  P ++A  W+ T F  +    ++    D ++A    PV+R+ V+++      + KL+ EG+L   R
Sbjct:   66 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAF-LMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FQG5_ECTSI2.090e-22777.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0X0L2_9STRA4.090e-3229.77Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A1V9Y8V1_9STRA7.580e-2528.65Rab-GAP TBC domain-containing protein n=1 Tax=Thra... [more]
A0A485KXF4_9STRA1.730e-2426.10Aste57867_12889 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XPR2_9STRA1.220e-1231.55Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A1V9ZMJ4_9STRA7.850e-1129.70Rab-GAP TBC domain-containing protein n=1 Tax=Achl... [more]
A0A163K2R5_ABSGL4.750e-1029.35Rab-GAP TBC domain-containing protein n=1 Tax=Absi... [more]
A0A0K8TSK8_TABBR1.000e-927.50Putative rab gtpase-activating protein 1-like isof... [more]
A0A7S0PBW2_CAFRO6.190e-930.19Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DQX2_CAFRO2.000e-830.19Rab-GAP TBC domain-containing protein n=3 Tax=Cafe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12695contigH-elongata_contig12695:2053..7906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score667.2
Seed ortholog evalue5.3e-189
Seed eggNOG ortholog2880.D7FQG5
KEGG koko:K20242
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG4436@1,KOG4436@2759
Ec32 orthologEc-01_006180.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_006180.2
Exons8
Model size1278
Cds size1278
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12695.1999.1prot_H-elongata_contig12695.1999.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12695 2053..7906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929752.9020424-CDS-H-elongata_contig12695:2052..21471622929752.9020424-CDS-H-elongata_contig12695:2052..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 2053..2147 +
1691679144.2858295-CDS-H-elongata_contig12695:2052..21471691679144.2858295-CDS-H-elongata_contig12695:2052..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 2053..2147 +
1622929752.9165838-CDS-H-elongata_contig12695:2829..29651622929752.9165838-CDS-H-elongata_contig12695:2829..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 2830..2965 +
1691679144.2957108-CDS-H-elongata_contig12695:2829..29651691679144.2957108-CDS-H-elongata_contig12695:2829..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 2830..2965 +
1622929752.9382443-CDS-H-elongata_contig12695:4122..42391622929752.9382443-CDS-H-elongata_contig12695:4122..4239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 4123..4239 +
1691679144.303245-CDS-H-elongata_contig12695:4122..42391691679144.303245-CDS-H-elongata_contig12695:4122..4239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 4123..4239 +
1622929752.9648442-CDS-H-elongata_contig12695:4882..49631622929752.9648442-CDS-H-elongata_contig12695:4882..4963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 4883..4963 +
1691679144.3114715-CDS-H-elongata_contig12695:4882..49631691679144.3114715-CDS-H-elongata_contig12695:4882..4963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 4883..4963 +
1622929753.0026824-CDS-H-elongata_contig12695:5362..56021622929753.0026824-CDS-H-elongata_contig12695:5362..5602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 5363..5602 +
1691679144.3202686-CDS-H-elongata_contig12695:5362..56021691679144.3202686-CDS-H-elongata_contig12695:5362..5602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 5363..5602 +
1622929753.0170555-CDS-H-elongata_contig12695:6227..64411622929753.0170555-CDS-H-elongata_contig12695:6227..6441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 6228..6441 +
1691679144.3291185-CDS-H-elongata_contig12695:6227..64411691679144.3291185-CDS-H-elongata_contig12695:6227..6441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 6228..6441 +
1622929753.036101-CDS-H-elongata_contig12695:6891..70461622929753.036101-CDS-H-elongata_contig12695:6891..7046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 6892..7046 +
1691679144.3391562-CDS-H-elongata_contig12695:6891..70461691679144.3391562-CDS-H-elongata_contig12695:6891..7046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 6892..7046 +
1622929753.1079733-CDS-H-elongata_contig12695:7666..79061622929753.1079733-CDS-H-elongata_contig12695:7666..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 7667..7906 +
1691679144.3467011-CDS-H-elongata_contig12695:7666..79061691679144.3467011-CDS-H-elongata_contig12695:7666..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12695 7667..7906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12695.1999.1

>prot_H-elongata_contig12695.1999.1 ID=prot_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp
MQRIPPALLASYRALYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSS
DQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLF
LYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPP
LYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDL
LKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADR
HLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLG
WDCLRACWLKSCLAARSDHDRHLLASEALRFVIANGGHAKAAAFMLGVGG
ADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAARE
GKLWSPLEMAEEACTEGGELDEGVSV
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mRNA from alignment at H-elongata_contig12695:2053..7906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12695.1999.1 ID=mRNA_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5854bp|location=Sequence derived from alignment at H-elongata_contig12695:2053..7906+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAGGATCCCCCCCGCTCTTCTGGCGAGCTACCGCGCCTTGTACGT GGTGCTACGTGGGTGTGCCGCGGATGCCGAGGAGGAGATCAATCGGTGTG GACTATGACGGCGGTGGTGTAATATCCCAAAGTATAGAAGCTTCCCTTGT TCTGTGTAATTTATCGCCGCTTGATTCATGCTTTGAGCATAGTGTGCTTG CAGCTGTGCGTTTAAAACAAATCGTCAGCGCGGCGGCGGGGCGGTTCTAG TGTTTTTTTTGGATCGATTGATCTCTCGCAGCGCAGGATTTGCTTCCCCG GATCATGTTGCGCGCGAGGCGCGTTTCAACTCATACTACTACACTGTGAA TATGTCAACAGGAAAAAACTGAGAATGTTCTGCATGTAGGGGGGAAAAGG GGGAGGGAGAGGCTTGACTTCGCCGTCGCGCTGCTGTGTAAAAGGGTTCG TTGGCGTGTATAGGAAAGCGTTACGCCTTGACACGAATCGCCTCGCGAGG TGTGTGGAACGTCGACCAGAGGGTGACGTGGTCGCCAAGCGTCTGGGGAA CAGATCATACGGATTCTGCGCGGATAGCTCGACTCGGCATCAATATACGA AACGGTTTCTTGTGCCCACCGGACCTGGTGCATCGTGGCAGGCGTTTTTT AGGTGTGTTTTGTATGTGTGCCATGCTTTCTGTAGGACACTTCGTCGACT GCTGATAGGTATTATCACCTTCATAAACTCACTTACATACCGTCCCGCTC TTTGACCTTCCTTTGTGATCGGCCCAGAGACATCTTGCGCACGGTTCGTG GCGTGACGGGACTGTTGCTGGATTTCTCCTCCGACCAGAGAGGCGAGCTC GCGGGGTCAATCAACCGCGTCCTGAACGCCCTCGCCCATGTGGACAACAT GAGCTACTGTCAAGTGCGGGCCTCTGCTGCTATTACTACATTAGACTACA CATGCCTCTCGATTCTCGATTCTAACTTGTATTTTTTTAGAACCTTGGAT ATATAAAAAAAAAACGGAAACCAACGGAGAGTGTTCTATAACATCAAAAA TATATAGGTTCTTCATGGGAATTCCAGAGTTACTGCACGGAGTTCCCCAC GAGGTGCTTCTGCATACTATGCCACACTATACTATACTATACTCTACTAT ACTGTACTCTACTATACTATACTATACTCTACTATACTATACTGTACGAT TTTTCGCTACACAATTTTGTGGCACAATTTCGTGTACGGAATGTTTTAGA GGCGAGATTGTTGGTGTTGGACTCTCGCGCTCGCGAGACCATTGTGCGCG TTGTCTCCCGCCTCGAGGGTGGTCGTGCTTGCCTACAGCAGTGGAAGAAC ACAAAGACTTGACCGTGCGCCGCTCGTCGCTCGCTGTCTGCGGTTGACGC GGAAAGGGGTGGGGTAAGGGACTGAGTAACAAAACACACATCAACTCTGG TAGAAAACGAGAGCACATCAACTCGACAGCGTTGTTGTTAGTAGTGATGG TTATTGATCGATCGATCCTACAGCTATACAAGATCGATCCGGAGCGAGGC AATGGCGAGGTTGGTACGATCGATCGATGTACAGTATTTTGCCATTGCGA GGTACTGTTTTGACCGATGTTCATATAATAGATAGGGTAGATTTAACTAT AGTTTGATGTTAATAGTTATGGTAGATATTAACAATTATATATTAATCAT TATATATGAATACAGAGTAGGTATATATTACTATAAATAGTTACTACAGT ACTGTGTACCAGTATATAATAACACAACCAACGACAACGAAGTAGAAGCT TGGTCCAATCGATTACTTTTGGTAAGGCGGCACAATCGATGCCGGTTGAT AAGATTGCAGGACGAGAGCATGCCAAGATAACCACAACCCTAACGCGCCC CCCCCCCCACACGCGAAGGTTTCACGCTTACGACTTCTCTTCCCCCCTCT CCCCTCCCCATTCCCCCCTCTCCCCTGGATAGTCATGCCTCTTTAACGCG TAGTGGTAGTAGTACGGTATTCGTATCCCATGATTGTGGCTGCACGATGT ACGATGCACGCTGTACGCAGGGGCAGAACTACGTGGTGGACGTGATGATG AAGGCAGGCCTCCCCGAGCGGGAGACGTTTTGCCTCTTCTTGTACCTCTT GAGACAGGGACACCTTCATGGAATCTACCGCAAAGAGGTTTCTGAAACAT TTGTGTGTGTGTTATGTATTGCACGATTTGCTTACTAGTTGGGTCGATTT CGTTTTCATTTTTCCTCGTTTATTTATTTATTCCTATTTTCGGGGTTTTT TTCATTTATATATTTCGGTTTTTTTCCAAAATTCTGCTCGCTTCCTCTCT TTCTACGCTATACTGTTATCTACACTATTAATAGCTCTCTTCTAGGTGGT CGTTATCATCTGGAAAAGAGAGGAGGAGGAAGATTGTTAGGTACAGTACA ATGTTGATGTTGACTGGTTCCTTTAGACGCAGACAAAGCCAGCTCTTGTG TGTTTCTGATTTTTGCACCCGCAAACGTCCGCCGACATTCCGACATCGAA GGACACGATATCGTCCGGCCTCTCTTTGGCAGCTCATCCCAGCACGACAA TACCGACATTTTTCATTTTTACCTCAAGGATAAGCAGTATAATAGTAGAA ATAGTAGCAGTAGTAGCAGCAGCAGCAGTAGCTCGTTCGGTGCGTGGGCG GCCTCATCTTCGCTGATTCGCTGAGTTCCTCGTTCCTTCTCTCCCCGCCA CACGCGGGACATCTTCTATCCCGTTGCCCTCTCGCCGTGTGCGATTTCTT CTGCTCCCCCTTTCTTCTCCCCCCGAAAAGGTTCCGATGCTGGTCGGGTA CATGGATAAGTTTGAAGAGCAGCTGCGGCTGCGGCTGCCCAAGCTAGCGG CACATTTCGAGGTGTGTCCCGAAATCTCCCCATCTGTTTTTCGGTTAGCT AGCTACTGGTATCGTAGTCGTAACGTCCACCTTTCTCGCGAAGTCTTGAC CGACTCCGTACGATTCAAGCTTGACCCTCTTTCTACTTTCCAACACCGCC TCCATATCGAACGCCATAAATAAAATGAACGGACGGAAACTCCAGCCCTT CCGTCCGTTCGTGGTATGGTATCGTGTACACAGAAGTCAGAAGACAACCG AGGCGGTAAGGTAACGTAAGGTATATTAAGGTAAGGTATATTTTCATGAT ACTGGTGTGATCCGGTGGCTACACCTCAGACACCAGGACCATCCTCCGTC CCTCACCGCACGCCGATCACACGGCCTCGTTTCGACCCCCCCCTCGTCCC GTCGCCGCAGGCCGAGCACTATCCCCCCCCCTTGTATGCGTTGGAGTGGA TGACGACCCTCTTTGGACTGGCCGCGCAGCCCCTCATCTCTCTCGTGGCG CTGGACCTCGTGCTGGCGGGGGCGCGGAACCCCGTGCTGCGGCTGTGCGT GTCGCTCCTCGGTGGGATGGAGGAGGACCTCTTGAAGCTGGACCAGGAGG GATTGCTAGAGGAGTTCCGCTCTAGGGCGGTGGCCGTTGATGCCGAGGAG GTGGGGATTGGGGGAAGGGTGTAGGAATTGGCGATGGATGAAAAGATCGA CGTGCGGTGGAAGTGGTGCCTGGCGAATAGGGAAAAGATACCGCCTTGCT CTTGGTGCGCTTTTTTCTAAAAATAAAGTGTCTTGTTTTGTTAATGAGTG TGGCGGGCTCTTGGTGGTAATGAGTTTACTAGGCTTACTGTATTGTATGA ATACATGGAAATAGGCTTTCGATATATAGACTATATACTATATGGAAATA GGCTTTGGAATATGGAAATAGGCTTTCGATATATAGACTATATACTATAA CAATTTCACGACGTTGGCTGGAGGAGGCATGCATCTTCCGTCTGGAGTAT CCTGTGTCTGGAATGTCTGGAATATCGAGTGTCCTGCGTCGAGTGTCCTG CGAGCAGAAGCGAGAGAGATAAATAGAGATGGATGGTAACGTGAGCCAAC GGTCGGGTAAAGCCTTGAGCGAACAGCATCACCCCCCCCCCCCCCCCCCC CACAAAGCACAACAGCTCAAAACGCTGATACATCGCCTAAATAGTAAATA ACGCTTGCTGCTGTAATTATGCGCTGCCATAAGTGTCATTAATTTATTCC TTCCTTCCTTCCTTCCGCCTCAAAGGTGATCGTGAGGGCCCTCATCGATG GTGGGCGTGGCGGCCGTGGGGCTGGGGCAAAGCGTTCCCGTGCGGGCGCC GACAGACACTTGGGCTGGTCCACCGGACCCGATTATCTCCTGGTGCTGCG GTCGCGGTATTGCGAGACAGTCGGACTGGTGGAGCTGAGGGAAGAAGCCA GGAAGACTCTCCTCGTTCACCATACGGCGCTACAGGCAAGTATCGAAGGG TGGTTGGGAGGCATTGACGGATTGAAGAAAGTGGCACAAGGAGGGTAGGG GAGAGGTATTGCATCTCCTTTCAAGAGAGCGCGGAGGCGTTTTTTTGTTC TTCGCGGCGACAGGCCGCGCGGATCCTAGGACTGGCCTGAAACGGGCAAG AGAATGGATACTAACGTCCGCGGTTTCGTTCACAGGATAAATGCGCGCCG GAAACATATCTCGCGATCTCGCGTGTCCTGTCTCCCCCCCCCCCACATCC CCCATGGATGGGTTGACTTGTGGGCCGAGCGGGGGGCGAGGCGAATTGAA GCGAAGTAAAAACTTGTTCAATGCTCCCCTCCATCGCTGCGAGCGAGAGA TATCTTAACGTCGAACCGTACGACCCCCTTTTTTTGCCCTTCGCTTTTGG CTTGCGTTTGCCCTTTTCCGAAGGATGCTCTACTGTCAGTAACGCGGATG CTCGGCTGGGACTGCCTGCGCGCGTGCTGGCTGAAGAGCTGCCTGGCGGC GCGGAGCGACCACGACCGACATCTTCTGGCGAGCGAGGCGCTGCGCTTCG TGATCGCCAACGGAGGTCACGCCAAGGCCGCGGCGTTCATGCTGGTGGGT GGCGTCGCGTCGTTGCCGCCTCGTCGATCGCCTGAAGTCCGTGGGTGGAT GCGCGGCCGCGGCGGTGGTTCCGCCAATGGGTGGCGGACATCTAAATACA AAACAAACCAAAGCAAAAAACCCCCCAACAACTGGATTTTTACAAAGCTC TTTTTTTTTATTCGTATTTCTTACGTATTATTATTGAATGCCTTAAGAGG ATAAATCACGTTGTTTTTCGAAGTTGAAAGAAGAGGCCGTGCCGCTTCGG CGACACTGTCGACGCCTCTTGAAGGTGTTCCAAAATTTGCACATCATATG AAGTGTGTATCCATATGTATATACCAAAATTATTTTCCCTGTTCAGCTGA CCACGAGCAGAAGGCAACCATATCCGGCACTTCCTTCTGCTAAAAGTGCG ACCAACAACAACAACAACAACAACAACAACCGTATATATACCATATGTTT TGTGGGGCTGGATTCCTCTCTTACGATCACGACACTCGTTATTGTACTTG TTTTTTCTTTCGCCTTTTTGTTGTATCGCCCCCCTCCCCCATTATTCACA CGCCTCTTAATTTTGGTTCTCTTTTTCTCTTCTCTCTATTTTTGTATCGT ACGTCTGCCTCCAGGGAGTCGGCGGGGCTGACGCGAACGGAGTGGACCCG CACCTTCTAACACCACTCCACCTTGCAGGGCTTTACAATCGACCCGACGT GGTGCGGGTGCTGCTGATGTGCGGGGCGTCGCCAAGACTGACGGGCGGGG TCACGCGCGTGGCCGCGGCCAGGGAGGGAAAGCTGTGGTCCCCTCTCGAG ATGGCGGAAGAGGCGTGCACCGAGGGGGGAGAACTGGACGAAGGTGTGAG TGTG
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Coding sequence (CDS) from alignment at H-elongata_contig12695:2053..7906+

>mRNA_H-elongata_contig12695.1999.1 ID=mRNA_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig12695:2053..7906+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAGGATCCCCCCCGCTCTTCTGGCGAGCTACCGCGCCTTGTACGT
GGTGCTACGTGGGTGTGCCGCGGATGCCGAGGAGGAGATCAATCGATGCA
GAGGATCCCCCCCGCTCTTCTGGCGAGCTACCGCGCCTTGTACGTGGTGC
TACGTGGGTGTGCCGCGGATGCCGAGGAGGAGATCAATCGAGACATCTTG
CGCACGGTTCGTGGCGTGACGGGACTGTTGCTGGATTTCTCCTCCGACCA
GAGAGGCGAGCTCGCGGGGTCAATCAACCGCGTCCTGAACGCCCTCGCCC
ATGTGGACAACATGAGCTACTGTCAAAGACATCTTGCGCACGGTTCGTGG
CGTGACGGGACTGTTGCTGGATTTCTCCTCCGACCAGAGAGGCGAGCTCG
CGGGGTCAATCAACCGCGTCCTGAACGCCCTCGCCCATGTGGACAACATG
AGCTACTGTCAAGGGCAGAACTACGTGGTGGACGTGATGATGAAGGCAGG
CCTCCCCGAGCGGGAGACGTTTTGCCTCTTCTTGTACCTCTTGAGACAGG
GACACCTTCATGGAATCTACCGCAAAGAGGGGCAGAACTACGTGGTGGAC
GTGATGATGAAGGCAGGCCTCCCCGAGCGGGAGACGTTTTGCCTCTTCTT
GTACCTCTTGAGACAGGGACACCTTCATGGAATCTACCGCAAAGAGGTTC
CGATGCTGGTCGGGTACATGGATAAGTTTGAAGAGCAGCTGCGGCTGCGG
CTGCCCAAGCTAGCGGCACATTTCGAGGTTCCGATGCTGGTCGGGTACAT
GGATAAGTTTGAAGAGCAGCTGCGGCTGCGGCTGCCCAAGCTAGCGGCAC
ATTTCGAGGCCGAGCACTATCCCCCCCCCTTGTATGCGTTGGAGTGGATG
ACGACCCTCTTTGGACTGGCCGCGCAGCCCCTCATCTCTCTCGTGGCGCT
GGACCTCGTGCTGGCGGGGGCGCGGAACCCCGTGCTGCGGCTGTGCGTGT
CGCTCCTCGGTGGGATGGAGGAGGACCTCTTGAAGCTGGACCAGGAGGGA
TTGCTAGAGGAGTTCCGCTCTAGGGCGGTGGCCGTTGATGCCGAGGAGGC
CGAGCACTATCCCCCCCCCTTGTATGCGTTGGAGTGGATGACGACCCTCT
TTGGACTGGCCGCGCAGCCCCTCATCTCTCTCGTGGCGCTGGACCTCGTG
CTGGCGGGGGCGCGGAACCCCGTGCTGCGGCTGTGCGTGTCGCTCCTCGG
TGGGATGGAGGAGGACCTCTTGAAGCTGGACCAGGAGGGATTGCTAGAGG
AGTTCCGCTCTAGGGCGGTGGCCGTTGATGCCGAGGAGGTGATCGTGAGG
GCCCTCATCGATGGTGGGCGTGGCGGCCGTGGGGCTGGGGCAAAGCGTTC
CCGTGCGGGCGCCGACAGACACTTGGGCTGGTCCACCGGACCCGATTATC
TCCTGGTGCTGCGGTCGCGGTATTGCGAGACAGTCGGACTGGTGGAGCTG
AGGGAAGAAGCCAGGAAGACTCTCCTCGTTCACCATACGGCGCTACAGGC
AAGTGATCGTGAGGGCCCTCATCGATGGTGGGCGTGGCGGCCGTGGGGCT
GGGGCAAAGCGTTCCCGTGCGGGCGCCGACAGACACTTGGGCTGGTCCAC
CGGACCCGATTATCTCCTGGTGCTGCGGTCGCGGTATTGCGAGACAGTCG
GACTGGTGGAGCTGAGGGAAGAAGCCAGGAAGACTCTCCTCGTTCACCAT
ACGGCGCTACAGGCAATAACGCGGATGCTCGGCTGGGACTGCCTGCGCGC
GTGCTGGCTGAAGAGCTGCCTGGCGGCGCGGAGCGACCACGACCGACATC
TTCTGGCGAGCGAGGCGCTGCGCTTCGTGATCGCCAACGGAGGTCACGCC
AAGGCCGCGGCGTTCATGCTGTAACGCGGATGCTCGGCTGGGACTGCCTG
CGCGCGTGCTGGCTGAAGAGCTGCCTGGCGGCGCGGAGCGACCACGACCG
ACATCTTCTGGCGAGCGAGGCGCTGCGCTTCGTGATCGCCAACGGAGGTC
ACGCCAAGGCCGCGGCGTTCATGCTGGGAGTCGGCGGGGCTGACGCGAAC
GGAGTGGACCCGCACCTTCTAACACCACTCCACCTTGCAGGGCTTTACAA
TCGACCCGACGTGGTGCGGGTGCTGCTGATGTGCGGGGCGTCGCCAAGAC
TGACGGGCGGGGTCACGCGCGTGGCCGCGGCCAGGGAGGGAAAGCTGTGG
TCCCCTCTCGAGATGGCGGAAGAGGCGTGCACCGAGGGGGGAGAACTGGA
CGAAGGTGTGAGTGTGGGAGTCGGCGGGGCTGACGCGAACGGAGTGGACC
CGCACCTTCTAACACCACTCCACCTTGCAGGGCTTTACAATCGACCCGAC
GTGGTGCGGGTGCTGCTGATGTGCGGGGCGTCGCCAAGACTGACGGGCGG
GGTCACGCGCGTGGCCGCGGCCAGGGAGGGAAAGCTGTGGTCCCCTCTCG
AGATGGCGGAAGAGGCGTGCACCGAGGGGGGAGAACTGGACGAAGGTGTG
AGTGTG
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