mRNA_H-elongata_contig12681.1990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12681.1990.1
Unique NamemRNA_H-elongata_contig12681.1990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: D8LFD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 775 bits (2001), Expect = 2.100e-257
Identity = 474/860 (55.12%), Postives = 566/860 (65.81%), Query Frame = 1
Query:    1 TVFAMYAMAIRRVVATVGEPLRSARARRVRLLAAVAAEISSSNLA---------------EEVVGP---AAQAAARDAGELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSFDEVLSWREADAVLVTPIRHTGTPEICPLAGTPHSLRYP---EEGKKEDDDGEEDLPMERNDRVDTEDCKKYEEGERSSSSCRGDTSDALSEDFSQEEGGGGGEYSASPQQDGTSRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSA----VYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQP--TDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSG-GGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRD------LSSSDGIDEHI------DDTKSK-----RKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVSSSGSGGLIAEAGVPE 2445
            TV+++YAMAIR V++T+G+PLR A ARR RL  A + E +++                  E VVG    AA+A AR+A E MPF YLPSVGAMLL + AV AHVLL+LG++WSVRF+AWS+FDEVL+W EADAVLVTP++HTG+P ICPL GTP  LR P   EEG++ +D+       E+         +K+     ++ + RG  S    E+                 + G       +TF LVELP+ WPLG YL+A GLT +       L+GENSV V+ PTFWHHL  RLTSPFVVF+LFNQVLWMLELYWLKA++AI EV+ VEA FVA+AE RR QL IR +       KRVRAWR G+WV IPV  M PGDLVSLK G  + A    ++     G+ + K+Q      V ++PAD+LL++GTAVV EASLTGESVPQIKTSL +EPIDFED LDMTGRHS HVLLSGT LLD TDG   ++ +P  T     A GS S+P STPDGGALC+VLRTGVYSFQGDLRR IDFGN H VR +SKDA YLL FLL+FAALS  HVVREGLKS+ VSGFRLLVQCVRI+S+VVP DL+ ELNQCLRNGV SLQ  HALACTEPFRIPLAGKV+VCLFDKTGTITSD+L AETL+ P+S RP+  P  V L  S   GG   + + P +   V+V  GCHSL  VDG L GDPLE+SALEGIRW+W+A S+ ARP D      L S  G           D  KS      RKQ E +  +      G               + +R  E   G+  +SV VWRR+AFSSQLQRMSVVAEV   GS GL  + GVPE
Sbjct:   77 TVYSLYAMAIRSVISTIGQPLRDATARRTRLFGAASDEAAAAXXXXXXXEAASASMLDGFEGVVGAGGAAAEALAREALEPMPFAYLPSVGAMLLLVAAVAAHVLLLLGKKWSVRFHAWSAFDEVLTWEEADAVLVTPVKHTGSPAICPLVGTPRLLRDPTATEEGQESEDESXXXXXEEKR--------RKFVLKRAATDAARGSESKRDDEEXXXXXXXXXXXXXXXSARRGAG-DEAADTFELVELPIRWPLGRYLQAGGLTLEAAGAKLRLFGENSVDVKQPTFWHHLADRLTSPFVVFNLFNQVLWMLELYWLKALLAIGEVIGVEAIFVADAERRRMQLDIRNSKKPT---KRVRAWRGGQWVPIPVSSMLPGDLVSLKTGVVAVAPEGSEV---GDGQDDAKMQDEEAFFVGELPADVLLLRGTAVVNEASLTGESVPQIKTSLTSEPIDFEDELDMTGRHSGHVLLSGTTLLDQTDGSDSDSSRPSPTATSSAALGS-SLPVSTPDGGALCYVLRTGVYSFQGDLRRTIDFGN-HGVRQESKDAGYLLAFLLTFAALSSAHVVREGLKSQAVSGFRLLVQCVRILSAVVPGDLSFELNQCLRNGVRSLQNGHALACTEPFRIPLAGKVDVCLFDKTGTITSDKLRAETLVTPKSLRPNSPPVAVSLGHSARSGGTAASSERPGLAAEVVV-GGCHSLMDVDGVLHGDPLEASALEGIRWNWDAISHTARPDDGEPVVALESDGGXXXXXXXXXDYDSDKSTGGGXXRKQ-EGKPGAKVEKKXGGRRKTKARGGSGNAGSHERGVEKASGDG-VSVAVWRRYAFSSQLQRMSVVAEVFG-GSAGLTDKEGVPE 915          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A6H5K3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A7_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 6.190e-180
Identity = 406/944 (43.01%), Postives = 490/944 (51.91%), Query Frame = 1
Query:    1 TVFAMYAMAIRRVVATVGEPLRSARARRVRLLAAVAAEISSSNL---------------AEEVVGP---AAQAAARDAGELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSFDEVLSWREADAVLVTPIRHTGTPEICPLAGTPHSLRYP---EEGKKEDDDG-----EEDLPMERNDRVDTEDCKKYE-EGERSS------SSCRGDT-SDALSEDFSQEEGG-------------------------GGGEYSASPQQ---------------------DGTS-------------------------RSRGQE---TFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGN----GKVQSAVY--DVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSS-----SDGIDEHID----------DTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVSSSGSGGLIAEAGVPE 2445
            TV+++YAMAIR V++TVG+PLR A ARR RL  A + E +++                  E VVG    AA+A AR+A E MPF YLPSVGAMLL   AV AHVLL+LG++WSVRF+AWS+FDEVLSW EADAVLVTP+RHTG+P ICPL G    LR P   EEG + +D+      EE      N+   T    K + +GE ++      SS  G T ++ LSE+  +EE G                          G +  A P                       DG                           R  G E   TF LVELP  WPLG YL+A GLT +D      ++GENSV V+ PTFWHHL  RLTSPFVVF+LFNQVLWMLELYWLKA++AI EV+ VEA FVA+AE RRRQL IR +   P   KRVRAWR G+WV IPV  M PGDLVSLK G  + A        +  G+G     G+ + A +  ++PAD+LL++GTAVV EASLTGESVPQIKTSL +EPIDFED LD+ G                                                              GDLRR IDFGN H VR +SKDA +LL FLL+FAALS  HVVREGLKS+ VSGFRLLVQ                                               V+VCLFDKTGTITSD+L AETL+ P+S RP+  P  V L  S   G    G +        V+ GCHSL  VDG L GDPLE+SALEGIRW W+A S+ ARP D  +     SDG                 T   R++ E +  +  A+  G               +++R  E   G+  ISV VWRR+AFSSQLQRMSVVAE+   GS GL  + GVPE
Sbjct:   77 TVYSLYAMAIRSVISTVGQPLRDATARRTRLFGAASDEAAAAGXXXXXXXXXXASMLDGTEGVVGAGGAAAEALAREALEPMPFAYLPSVGAMLLLAAAVAAHVLLLLGKKWSVRFHAWSAFDEVLSWEEADAVLVTPVRHTGSPAICPLVGANRLLRDPTATEEGWESEDESQDVEDEEQAVSSTNESGGTPGATKLDGDGEGTAGLGEDLSSEEGSTPTEYLSEELEEEEAGISGVSRKRKGAAAASGTTASAXXXXXGADVGADPPSFVYQRRKFVLKRAVTVAARGSDGKXXXXXXXXXXXXXXXXXXXXXXXXXXRGSGDEVADTFELVELPTRWPLGRYLQAGGLTLEDAVTKLRMFGENSVDVKQPTFWHHLADRLTSPFVVFNLFNQVLWMLELYWLKALLAIGEVIGVEAVFVADAERRRRQLDIRNS-NKPT--KRVRAWRGGQWVPIPVSSMLPGDLVSLKTGVVAVAPE-----GSEGGDGQDDKKGQDEEAFFVGELPADVLLLRGTAVVNEASLTGESVPQIKTSLTSEPIDFEDELDIAG--------------------------------------------------------------GDLRRTIDFGN-HGVRQESKDAGFLLAFLLTFAALSSAHVVREGLKSQAVSGFRLLVQ-----------------------------------------------VDVCLFDKTGTITSDKLRAETLVTPQSLRPNSPPVAVSLGHSARSGGTAAGLERPGLAAEAVVGGCHSLMDVDGVLHGDPLEASALEGIRWKWDALSHTARPDDGETAVSQRSDGXXXXXXXXXXXXXXDKSTGGHRRKPEGKPGAK-AEKKGGRRKTKARGGSGNSGSDERGVEKASGDG-ISVAVWRRYAFSSQLQRMSVVAEIYG-GSAGLTNKEGVPE 899          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A7S2MSH4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSH4_9STRA)

HSP 1 Score: 299 bits (765), Expect = 2.650e-82
Identity = 232/747 (31.06%), Postives = 356/747 (47.66%), Query Frame = 1
Query:  181 GELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSFDEVLSWREADAVLVTPIRHTGTPEICPLAGTPHSLRYPEEGKKEDDDGEEDLPMERNDRVDTEDCKKYEEGERSSSSCRGDTSDALSEDFSQEEGGGGGEYSASPQQDGTSRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLK----AGDASTAERKDDIIANT-AGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSGGGGVCETGD-DPEMYPGVIVLAGCHSLTSVDGA-LRGDPLESSALEGIRWDWNATSYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVS 2400
            G  +P  YLPS  +      AVT   L  L  RW V F A + F      +E   VLV P+ H G  EI P+              K    G      +R         +KY            D    L+ D+            A   +D   +         V  P+ +P+ +Y +++GL+++DV +   LYG+N V V  P  +  + ++L SP V+F +F  +LWML+ YW   +  +F ++  EA     A  R R      +M   P   +V  +RDGKW  +  E + PGDL+S      A       +K  I     A   N K   A   VP D++++ G+AVV EA+LTGESVPQ+K +L  +  + +  L++ G H  H L SGT ++  +    D+             + + P  TPDGG LC VLRTG  S QG+L +MI+F +T  V   SK+    L  LL FA  S  +V+++GL     +   LL++CV II+SVVP  L +++   +   +++L   + + CTEPFR+P AGK++ CLFDKTGT+T+D+L    ++       +++P  V  A      V    D +       +VL  CHSL  ++G  + GDP+E +AL+G+ W ++AT+ +ARP   + ++   E  +     +      A   +A +   V  V+           K QK+    +   SV++ +RH F+S+LQRMSVV  V+
Sbjct:  139 GRPLPSRYLPSAVSCAAIFFAVTLTALFFLLCRWLVWFKALTLFAPATEIKEGSFVLVQPLSHHGKAEITPVV-------------KSKQTGMPCFVFQR---------QKY------------DLLRPLAHDY------------ADMSEDCVGKGAENGAVRKVTCPIDYPVDYYAKSQGLSSEDVQQRIDLYGKNIVRVPTPKIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIFTLFSIVMFEA---TTAFQRLRTFSTLGSMASKPTPLQV--YRDGKWSQLTTEDLLPGDLISFTRRAPAPPPGPRGKKQRITGGPDAPAANKKSAQATDAVPCDLIILSGSAVVNEATLTGESVPQMKDALKVDAHEKKS-LNVDGAHRVHTLFSGTSVVVASPAAEDD-------------NTAHPVKTPDGGCLCLVLRTGFSSSQGELMQMIEF-STQQVSADSKETGLALLVLLCFAIASAGYVLKKGLAKGDRTTHELLLKCVIIITSVVPRQLPMQMAMAVNTALMALM-KNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGVV-------NNMPGAVKAAA-----VRPMVDVNVARAEAALVLGACHSLVHMEGVGVVGDPIEIAALKGVEWSYDATTQVARPGQWNIAEKALEEEE-----KAVETLGATEKTAKEKAQVRVVELQKSI------KVQKQRAADSPVSSVQILQRHHFNSELQRMSVVCSVN 795          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A4S6J4_OSTLU (p-ATPase family transporter: cation (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6J4_OSTLU)

HSP 1 Score: 285 bits (729), Expect = 1.090e-78
Identity = 193/588 (32.82%), Postives = 294/588 (50.00%), Query Frame = 1
Query:  643 SRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSH-RPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVSS 2403
            +R +GQ     +E P   PL  Y++++GL+ ++V      YG+N++ V  PTFW+   ++LT P  VF +F  +LW+++ YW  A+ +   +L  E G  A +    RQ  I           R+   R G W     E + PGD++S+K                     NG  +     VP D +L+ G+AVV EASLTGESVPQ+K  +  E +  ++ LDM G H  H+L SGT L+ +T     +TE           S ++  +TPDGG LC+VL+TG  S QG L RM++F ++  V   +K+   LL  LL FA  +  +V  +G+   + S + L+++C+ I++SVVP DL ++    +   +++L    ++ CTEPFR+P+AGKV+ CLFDKTGTITSDRL AE +++  +   P   P   D   S                  IV+ GCH+L  +DG   GDPLE +AL GI+W ++  +++  P+       +D+ I                                             S+ G    SV++  R+ F+S LQRMSV+A+VSS
Sbjct:   93 ARGKGQGELREIETPKDLPLSHYVKSRGLSGEEVHHSHERYGDNALQVNIPTFWNLYKEQLTGPVTVFQIFTVLLWLMDEYWKYALFSALSLLIFE-GTTAFS----RQRNIATLRGMGQKAGRILVRRGGVWEDHSTEELYPGDIISIKR--------------------NGGEE---VPVPCDCVLLAGSAVVNEASLTGESVPQMKEHINPE-VSKDERLDMNGLHKVHILYSGTTLMQHTS----KTESE---------SSALQVTTPDGGCLCYVLQTGFASTQGKLMRMMEF-SSEQVTGDTKETLVLLFILLIFALAASYNVYVKGIADGKRSQYELILRCIMIVTSVVPPDLPMQTAMAVNTALIALV-KASVYCTEPFRVPVAGKVDCCLFDKTGTITSDRLVAEGVLSDLTKGAPLKQPVEADKNVS------------------IVIGGCHALLEIDGKTFGDPLEKAALLGIKWKYDPATHLGTPK-------LDDKI-------------------------------------------TRSWTGAENTSVKILVRNHFASALQRMSVIADVSS 568          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A7R9XPZ9_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XPZ9_9CHLO)

HSP 1 Score: 285 bits (729), Expect = 9.630e-78
Identity = 193/588 (32.82%), Postives = 294/588 (50.00%), Query Frame = 1
Query:  643 SRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSH-RPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVSS 2403
            +R +GQ     +E P   PL  Y++++GL+ ++V      YG+N++ V  PTFW+   ++LT P  VF +F  +LW+++ YW  A+ +   +L  E G  A +    RQ  I           R+   R G W     E + PGD++S+K                     NG  +     VP D +L+ G+AVV EASLTGESVPQ+K  +  E +  ++ LDM G H  H+L SGT L+ +T     +TE           S ++  +TPDGG LC+VL+TG  S QG L RM++F ++  V   +K+   LL  LL FA  +  +V  +G+   + S + L+++C+ I++SVVP DL ++    +   +++L    ++ CTEPFR+P+AGKV+ CLFDKTGTITSDRL AE +++  +   P   P   D   S                  IV+ GCH+L  +DG   GDPLE +AL GI+W ++  +++  P+       +D+ I                                             S+ G    SV++  R+ F+S LQRMSV+A+VSS
Sbjct:  245 ARGKGQGELREIETPKDLPLSHYVKSRGLSGEEVHHSHERYGDNALQVNIPTFWNLYKEQLTGPVTVFQIFTVLLWLMDEYWKYALFSALSLLIFE-GTTAFS----RQRNIATLRGMGQKAGRILVRRGGVWEDHSTEELYPGDIISIKR--------------------NGGEE---VPVPCDCVLLAGSAVVNEASLTGESVPQMKEHINPE-VSKDERLDMNGLHKVHILYSGTTLMQHTS----KTESE---------SSALQVTTPDGGCLCYVLQTGFASTQGKLMRMMEF-SSEQVTGDTKETLVLLFILLIFALAASYNVYVKGIADGKRSQYELILRCIMIVTSVVPPDLPMQTAMAVNTALIALV-KASVYCTEPFRVPVAGKVDCCLFDKTGTITSDRLVAEGVLSDLTKGAPLKQPVEADKNVS------------------IVIGGCHALLEIDGKTFGDPLEKAALLGIKWKYDPATHLGTPK-------LDDKI-------------------------------------------TRSWTGAENTSVKILVRNHFASALQRMSVIADVSS 720          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A096P888_OSTTA (P-type ATPase, phosphorylation site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P888_OSTTA)

HSP 1 Score: 284 bits (727), Expect = 1.720e-77
Identity = 179/496 (36.09%), Postives = 263/496 (53.02%), Query Frame = 1
Query:  646 RSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPR 2133
            R +G+     +E P   PL  Y++AKGLTA +V      +G N++ V  PTFW    ++LTSP  VF +F  +LW+++ YW  A+ +    LA+  G  A +    RQ  +          +R+   R G W     E + PGD++SLK        R  D I                 VP D +L+ G+AVV EASLTGESVPQ+K  +  E +  +  LDM G H  HVL SGT L+ ++     E             S S+   TPDGG LC+V++TG  S QG L RM++F ++  V   +K+   LL  LL FA  +  +V  +G+K  + S + L+++C+ II+SVVP DL ++    +   ++SL       CTEPFR+P+AGKV+ CLFDKTGTITSDRL AE ++     +  +L   V+ +++                  IV+ GCH+L  +DG + GDPLE +AL GI+W ++  ++ A P+
Sbjct:  237 RGKGRGELREIETPKSLPLSSYVKAKGLTADEVHHAHERFGNNALKVNVPTFWELYKEQLTSPVTVFQIFTVLLWLMDEYWKYALFSALS-LAIFEGTTAFS----RQKNVATLRGMGQQAERIMVRRSGVWEERSTEELYPGDVISLK-------RRGGDEIT----------------VPCDCVLLSGSAVVNEASLTGESVPQMKECINPE-VSKDQPLDMNGVHKVHVLYSGTSLMQHSAKTDSE-------------SVSVTIKTPDGGCLCYVVQTGFSSTQGKLMRMMEF-SSEQVTGDAKETLILLFILLVFALAASYNVYVQGVKDGKRSQYELVLRCIMIITSVVPPDLPMQTALAVNTALISLVKSQVY-CTEPFRVPVAGKVDSCLFDKTGTITSDRLVAEGILCDLK-KGAELKKPVEASQTAS----------------IVIGGCHALLQIDGKMFGDPLEKAALLGIKWKYDPATHTATPK 671          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A836CMB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB3_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.470e-77
Identity = 230/728 (31.59%), Postives = 320/728 (43.96%), Query Frame = 1
Query:  181 GELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSFDEVLSWREADAVLVTPIRHTGTPEICPLA------------------------GTPHSLRYPEEGKKEDDDGEEDLPMERNDRVDT-------EDCKKYEEGERSSSSCR--GDTSDALSEDFSQEEGGGGGEYSASPQQDGTSRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLK-----KRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMI----------------------DFGNTHDVR------------------------DQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQV----SGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSH---RPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGI 2091
            G  +P  Y+PS  A LL L AV AH L  LG+RWSVRF A   +   L   +ADAVLV P+ H G P +C L                         G   +L   EE   EDD G                     ED   +   +R        GD  DAL           G    A+P +   +         +V+LPV  P+  Y+EA GL A +  R  A YG NS+ V P T        +  P+ VF LF+Q+L +LE +W  A        A+ AGF   +EW      + ++      +     + V+ WRDG W  +P E + PGD+++L                  A EG+        ++PADM++++G+A+V EA+LTGE VPQ+K SL +   D    LD+   H +H L +GT LL  T G   + E P +     +  P  P   P GG L +VLRTG YS QGDL RM                       D G T D R                          +++   LLG L      S   ++ +   +       SGFR LVQC R++++ +P ++ +E+  C+  G   L     +AC EP R+PLA +V+V LFDKTGT+T+D L A +L+        +P  LP R     S       +    ++     VLAGCHSL +V+G L GDPLE+SAL G+
Sbjct:  168 GVYVPLAYMPSPLAALLLLSAVMAHTLFALGQRWSVRFRALCGYARALDAADADAVLVQPVAHFGAPALCALQREGAAAAQSRRDRSGSSXXXSGDDGATAALTDSEEDTAEDDSGXXXXXXXXXXXXXXXXXXXXXEDGALFFTYQRRKFLVHLPGDGPDALE----------GAARGAAPHRSACT---------MVDLPVDLPVQRYIEAAGLGAAEARRRRARYGRNSLRVLPRTVRGTFVDNVLGPYSVFQLFSQLLGVLEQHWAHA--------AMSAGFTLASEWTAAYEALASSKLLSADQAARGGRPVQCWRDGAWAELPSEQLVPGDVMAL------------------APEGSP------MELPADMVVLRGSALVDEATLTGEGVPQMKASLLSAVFDEGAALDVARAHRTHALFAGTTLLQTTPGA--DEEPPHE-----WRLPRAPP--PGGGCLAYVLRTGFYSSQGDLLRMTEGLGGGYSSTSPKLGSLPRLPSDAGATRDARRSLRLSIRPMCISNSPRRMSFIHISSTRETGVLLGLLSGVGVASVARLLLQSSAAAATGHVCSGFRTLVQCARVLTAAIPVEVHIEVMHCVGGGARQLLRQTGVACAEPRRLPLAARVDVALFDKTGTLTADELRARSLVVGGDQPVVKP--LPLRPPTHNSSSSAAAASDRPAQLQLAAAVLAGCHSLMAVNGTLVGDPLEASALGGV 833          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A0L0DKD0_THETB (P-type ATPase superfamily n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKD0_THETB)

HSP 1 Score: 281 bits (718), Expect = 2.670e-76
Identity = 187/504 (37.10%), Postives = 264/504 (52.38%), Query Frame = 1
Query:  661 ETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLK-----AGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPE-STPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSH--RPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSSS 2148
            E +  VE PV  PL  Y+ A+GL   D     +++G N   +  PTF      +L SPF VF  F  +LW L+ YW  ++  +  +L  EA        R + L     M   P  + + A+  GKWV +    + PGD++S++     A   ST E +    A +AG  + + QS+   +P D LL+ G+ VV EA+LTGESVPQ+K  +AA  +     LD+ G H  H++  GT LL +T             G  A  S    + S PDGGA  +VLRTG  S QG L RMI FG    V   + +   L+GFLL FA +S  +V+ +G+       F LL+ C+ I++SV+P DL ++L   + + +++L    A+ CTEPFRIPLAGKVNV LFDKTGTIT+D+L A+ ++A      +P D P     AR                   +VLAGCHSL  V+G + GDPLE  AL+ +   ++A + IA     SSS
Sbjct:  232 ELWLRVECPVDAPLESYISAEGLHLADAGDARSMFGPNLYEIPMPTFGELYKDQLLSPFTVFQFFCVLLWCLDDYWKYSLFTLAMLLVFEATVSFS---RLKSLSTLRAMNNAP--RAILAFHSGKWVPVDSTELLPGDIISIRRNAVAATTMSTLEDRASSSATSAGASD-QPQSSDNTIPCDCLLLSGSVVVNEANLTGESVPQLKEGVAATEVAPHVALDINGEHKVHMVFGGTTLLQHT-------------GTGASSSGDTDKLSPPDGGAAAYVLRTGFSSSQGKLVRMIQFG-AEKVTAGAGEVLLLMGFLLVFAIISSGYVLYKGMYDDDRDQFDLLLHCILIVTSVIPPDLNMQLAMAVNSSLMTLM-KAAIFCTEPFRIPLAGKVNVALFDKTGTITTDKLVADAVVARNGPPVKPSDAPRS---AR-------------------VVLAGCHSLVQVNGIVLGDPLEEEALKAVSASYDAQTNIAALNSSSSS 692          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: C1E867_MICCC (P-type ATPase superfamily n=2 Tax=Micromonas TaxID=38832 RepID=C1E867_MICCC)

HSP 1 Score: 281 bits (718), Expect = 3.350e-76
Identity = 202/577 (35.01%), Postives = 307/577 (53.21%), Query Frame = 1
Query:  676 VELPVGWPLGWYLE-AKGLTAQDVSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQL-GIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPI--DFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSGGGGVCETGDDPEMYPGV-IVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVA 2391
            V+ PV  PL  YL+  +G++A  V+  ++ +G+NS+ V  PTF     ++L SP  VF +F  +LW+L+ YW  A+ +   +L  EA          R L G+ AT T      R+ A+RDG+W     E + PGD++S               +A   G G+         +P D L+++G+AVV EASLTGESVPQ+K SL+ E +  D    LD+ G H  +VL SGT+L+  + G   E+EQ       A G P+    TPDGG LC+VL+TG  S QG L RM++F ++  V   + +   LL  L  FA ++  +V   G+K  + S + L+++C+ I++SVVP +L ++    +   +++L    ++ CTEPFR+P++GKV+  LFDKTGT+TSD+L A  ++ P+    DD            G   E    PE      +V+AGCHSL  VDG   GDPLE +AL G++W ++  S  A P +       D+ + + ++KR +  A+      D + +V  V            K  K ++ G+  + + V  R+ FSS LQRMS VA
Sbjct:  269 VQTPVAEPLASYLQPTRGMSAGGVAASTSRFGDNSLRVPLPTFLKCYKEQLMSPVCVFQVFTTLLWLLDEYWKYALFSAANLLMFEAATAFSRIKNIRTLRGMGATPT------RIVAFRDGRWEVRSSEELVPGDIIS---------------VARPPGAGD-------TPIPCDCLVLRGSAVVNEASLTGESVPQMKDSLSGETVAGDPAAPLDINGEHKVNVLYSGTMLMQQSQG---ESEQ-------AHGLPA----TPDGGCLCYVLQTGFSSTQGKLMRMMEF-SSEQVTGDTWETLVLLFILFVFACVASGNVFVMGMKDGKRSQYELVLRCILILTSVVPPELPMQTAMAVNTALIALMR-ASVFCTEPFRVPISGKVDTTLFDKTGTLTSDKLVAMGIVTPK----DD------------GSFTELTPCPEATKSASLVVAGCHSLVQVDGKTFGDPLEQAALMGVKWRFDPRSQTALPTENFPDPARDKALAEARAKRAEMVAKLP---RDRAHTVPPV---------PEPKPPKRTWKGSPSVKILV--RNHFSSALQRMSTVA 771          
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Match: A0A7S4RGD9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGD9_9DINO)

HSP 1 Score: 280 bits (717), Expect = 3.940e-76
Identity = 239/751 (31.82%), Postives = 344/751 (45.81%), Query Frame = 1
Query:  184 ELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSFDEVLSWREADAVLVTPIRHTGTPEICPLAGTPHSLRYPEEGKKEDDDGEEDLPMERNDRVDTEDCKKYEEGERSSSSCRGDTSDALSEDFSQEEGGGGGEYSASPQQDGTSRSRGQETFGLVELPVGWPLGWYLEAKGLTAQD-VSRGSALYGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIFEVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEGMRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYD-VPADMLLIKGTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLLLDNTDGILDETEQPTDGGCTAF--GSPSIPESTPDGGALCFVLRTGVYSFQGDLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVSGFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIPLAGKVNVCLFDKTGTITSDRL--------AAETLIAPRSHRPDDLPARVDLARSGGGGVCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNATSYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDXXXXXXXXXNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVS 2400
            E +P  + P+  A      +++ H L  L   W VRF A   +    S  E   V V P  H G P + PL  +  S+R     +++                      +YE  E                D   E GGGGGE                    LV+ PV   +  Y  A+GL  ++ V     L+G N + VE PTF     ++L +P V+F +F  +LWM + +    ++ I  +L  E+  V +     + L    T  Y      V+ +R G+WV +    + PGDLV L      TA R   +  + +     + +    D VP D ++I+G AV  EASLTGES PQ+K +L AE    +  LD+ G    H L SGT LL  ++G      +   GG      G+P +P  TPDGG LCFV+RTG  S QG+L +MI+F     V   +K+    L  LL+FA ++  +V++ GL+  + +   LL++CV I+++VVP  L +++   +   +++L     + CTEP+R+PLAGK+  C FDKTGT+T+D L        A ET+  P    PD +P R              G  P      +VLA CHSL +VDG L GDP+E +ALEG+ W ++A +  ARP                        AR A++SA   G  T +             RQ     G A     V RR  F+SQLQRM+VVAEVS
Sbjct:   82 EPLPSSWAPNPWASAALFASLSLHALFHLLCHWGVRFRAAVLYQPARSVYEGCFVQVMPHPHRGRPALAPLRSSESSVRLHFVFQRQ----------------------RYELWEP---------------DARPEAGGGGGEVR------------------LVQCPVANAVQSYAAARGLEGEEQVEELRDLFGHNLLEVETPTFLECYKEQLLTPLVIFQVFVALLWMADDFIQYTLMQILFILIFESTSVLQRLRTFKMLNSMGTKPYG-----VQVYRSGRWVEVSTADLLPGDLVEL------TASRSPPVARDGSSPAPAEEEKLALDIVPCDCVIIRGEAVASEASLTGESAPQMKDALIAE----DRALDLQGSDRVHCLFSGTQLLRASEGRHRGGAELPGGGRPEVVQGAPEVPP-TPDGGCLCFVVRTGFASSQGELLQMIEFSQ-EKVSGDTKEVIVALLVLLAFALVAAGYVLKTGLEKGEKTPHELLLKCVIILTAVVPRQLPMQMAVAVNTALMALLRS-GVYCTEPYRVPLAGKLTHCFFDKTGTLTTDTLLPVGVVNVAPETVAGPGY--PDQVPVR--------------GSSPAA---ALVLAACHSLVAVDGRLSGDPIEVAALEGVGWHYDAEAETARP------------------------ARPAADSAQSEG--TPIKDASTPGD-----RQDPGPDGCAH----VLRRFHFASQLQRMAVVAEVS 705          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12681.1990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD5_ECTSI2.100e-25755.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3A7_9PHAE6.190e-18043.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2MSH4_9STRA2.650e-8231.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A4S6J4_OSTLU1.090e-7832.82p-ATPase family transporter: cation (Fragment) n=1... [more]
A0A7R9XPZ9_9CHLO9.630e-7832.82Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A096P888_OSTTA1.720e-7736.09P-type ATPase, phosphorylation site n=2 Tax=Ostreo... [more]
A0A836CMB3_9STRA3.470e-7731.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0DKD0_THETB2.670e-7637.10P-type ATPase superfamily n=1 Tax=Thecamonas trahe... [more]
C1E867_MICCC3.350e-7635.01P-type ATPase superfamily n=2 Tax=Micromonas TaxID... [more]
A0A7S4RGD9_9DINO3.940e-7631.82Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12681contigH-elongata_contig12681:93..8202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score780.0
Seed ortholog evalue1.1e-222
Seed eggNOG ortholog2880.D8LFD5
KEGG koko:K14950
KEGG TC3.A.3.10
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0209@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal anchor
Exons12
Model size2445
Cds size2433
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.2626562-CDS-H-elongata_contig12681:92..5331622929751.2626562-CDS-H-elongata_contig12681:92..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 93..533 -
1691679143.468968-CDS-H-elongata_contig12681:92..5331691679143.468968-CDS-H-elongata_contig12681:92..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 93..533 -
1622929751.2788584-CDS-H-elongata_contig12681:1012..11921622929751.2788584-CDS-H-elongata_contig12681:1012..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 1013..1192 -
1691679143.4813797-CDS-H-elongata_contig12681:1012..11921691679143.4813797-CDS-H-elongata_contig12681:1012..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 1013..1192 -
1622929751.2934754-CDS-H-elongata_contig12681:1941..20821622929751.2934754-CDS-H-elongata_contig12681:1941..2082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 1942..2082 -
1691679143.4905567-CDS-H-elongata_contig12681:1941..20821691679143.4905567-CDS-H-elongata_contig12681:1941..2082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 1942..2082 -
1622929751.310142-CDS-H-elongata_contig12681:2408..25151622929751.310142-CDS-H-elongata_contig12681:2408..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 2409..2515 -
1691679143.501393-CDS-H-elongata_contig12681:2408..25151691679143.501393-CDS-H-elongata_contig12681:2408..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 2409..2515 -
1622929751.32545-CDS-H-elongata_contig12681:3077..32061622929751.32545-CDS-H-elongata_contig12681:3077..3206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 3078..3206 -
1691679143.5085356-CDS-H-elongata_contig12681:3077..32061691679143.5085356-CDS-H-elongata_contig12681:3077..3206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 3078..3206 -
1622929751.3361883-CDS-H-elongata_contig12681:3559..36831622929751.3361883-CDS-H-elongata_contig12681:3559..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 3560..3683 -
1691679143.5155997-CDS-H-elongata_contig12681:3559..36831691679143.5155997-CDS-H-elongata_contig12681:3559..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 3560..3683 -
1622929751.3530025-CDS-H-elongata_contig12681:4100..44391622929751.3530025-CDS-H-elongata_contig12681:4100..4439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 4101..4439 -
1691679143.5229847-CDS-H-elongata_contig12681:4100..44391691679143.5229847-CDS-H-elongata_contig12681:4100..4439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 4101..4439 -
1622929751.3646307-CDS-H-elongata_contig12681:4821..49441622929751.3646307-CDS-H-elongata_contig12681:4821..4944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 4822..4944 -
1691679143.5325737-CDS-H-elongata_contig12681:4821..49441691679143.5325737-CDS-H-elongata_contig12681:4821..4944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 4822..4944 -
1622929751.3812268-CDS-H-elongata_contig12681:5346..55001622929751.3812268-CDS-H-elongata_contig12681:5346..5500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 5347..5500 -
1691679143.5425065-CDS-H-elongata_contig12681:5346..55001691679143.5425065-CDS-H-elongata_contig12681:5346..5500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 5347..5500 -
1622929751.3976176-CDS-H-elongata_contig12681:6277..63261622929751.3976176-CDS-H-elongata_contig12681:6277..6326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 6278..6326 -
1691679143.5512412-CDS-H-elongata_contig12681:6277..63261691679143.5512412-CDS-H-elongata_contig12681:6277..6326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 6278..6326 -
1622929751.4143584-CDS-H-elongata_contig12681:6590..69461622929751.4143584-CDS-H-elongata_contig12681:6590..6946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 6591..6946 -
1691679143.5600119-CDS-H-elongata_contig12681:6590..69461691679143.5600119-CDS-H-elongata_contig12681:6590..6946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 6591..6946 -
1622929751.4280136-CDS-H-elongata_contig12681:7900..81901622929751.4280136-CDS-H-elongata_contig12681:7900..8190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 7901..8190 -
1691679143.569161-CDS-H-elongata_contig12681:7900..81901691679143.569161-CDS-H-elongata_contig12681:7900..8190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12681 7901..8190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.4610493-UTR-H-elongata_contig12681:8190..82021622929751.4610493-UTR-H-elongata_contig12681:8190..8202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12681 8191..8202 -
1691679143.579168-UTR-H-elongata_contig12681:8190..82021691679143.579168-UTR-H-elongata_contig12681:8190..8202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12681 8191..8202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12681.1990.1prot_H-elongata_contig12681.1990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12681 93..8190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12681.1990.1

>prot_H-elongata_contig12681.1990.1 ID=prot_H-elongata_contig12681.1990.1|Name=mRNA_H-elongata_contig12681.1990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=811bp
MYAMAIRRVVATVGEPLRSARARRVRLLAAVAAEISSSNLAEEVVGPAAQ
AAARDAGELMPFPYLPSVGAMLLTLIAVTAHVLLVLGRRWSVRFNAWSSF
DEVLSWREADAVLVTPIRHTGTPEICPLAGTPHSLRYPEEGKKEDDDGEE
DLPMERNDRVDTEDCKKYEEGERSSSSCRGDTSDALSEDFSQEEGGGGGE
YSASPQQDGTSRSRGQETFGLVELPVGWPLGWYLEAKGLTAQDVSRGSAL
YGENSVHVEPPTFWHHLGQRLTSPFVVFSLFNQVLWMLELYWLKAMVAIF
EVLAVEAGFVAEAEWRRRQLGIRATMTYPPLKKRVRAWRDGKWVSIPVEG
MRPGDLVSLKAGDASTAERKDDIIANTAGEGNGKVQSAVYDVPADMLLIK
GTAVVIEASLTGESVPQIKTSLAAEPIDFEDVLDMTGRHSSHVLLSGTLL
LDNTDGILDETEQPTDGGCTAFGSPSIPESTPDGGALCFVLRTGVYSFQG
DLRRMIDFGNTHDVRDQSKDAAYLLGFLLSFAALSCCHVVREGLKSKQVS
GFRLLVQCVRIISSVVPEDLALELNQCLRNGVLSLQGDHALACTEPFRIP
LAGKVNVCLFDKTGTITSDRLAAETLIAPRSHRPDDLPARVDLARSGGGG
VCETGDDPEMYPGVIVLAGCHSLTSVDGALRGDPLESSALEGIRWDWNAT
SYIARPRDLSSSDGIDEHIDDTKSKRKQNEARAASNSADDSGSVTAVDSS
AHGGGGDNEKRQKESYIGNAEISVRVWRRHAFSSQLQRMSVVAEVSSSGS
GGLIAEAGVPE
back to top

mRNA from alignment at H-elongata_contig12681:93..8202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12681.1990.1 ID=mRNA_H-elongata_contig12681.1990.1|Name=mRNA_H-elongata_contig12681.1990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8110bp|location=Sequence derived from alignment at H-elongata_contig12681:93..8202- (Himanthalia elongata Himel1 dioecious)
ACCGTTTTTGCTATGTACGCTATGGCAATCCGACGCGTCGTGGCTACCGT AGGTGAACCGCTGCGCTCCGCGAGGGCCCGGCGAGTGCGCCTGTTGGCAG CCGTGGCGGCAGAGATATCGTCATCGAATCTTGCCGAGGAGGTCGTGGGT CCCGCGGCGCAGGCGGCCGCTCGTGACGCGGGGGAACTAATGCCGTTTCC GTATCTCCCCAGCGTGGGAGCAATGCTGCTGACGCTCATTGCCGTCACCG CCCACGTGTTGCTGGTCCTCGGGAGGCGGTGGTCCGTTCGCTTCAATGCT TGGTGGGTAGATTGGTCAGCTTGACGACTATTATTAGAGTTTTTCTTGCT TTTTTCAGGCACACGGATAGAGGTGGGGCGAGGGAGGGGCATAGACTACG TATCATCCATCATCCATTATATCCCTACAATGCCGGAACGGAGCGATATG CTATGCTGGGTTTCCGCCAGCCAGGCTGCGTTTCACAAGGATGATACAAA ATTTTAGCCATCGTCGTTGAGTTTACAGTTTACGATGCCAAATCGGACAT GCCACGGGTTAATTGGACCCAAATATTGCACATTCAGCGGGCGCGGCAAT GCTCCAAGTACTGTACTGCGAAGGGATCTTGATATTTCTGTGCGTACGGA TAAGCGCCGCACGCACAAGCCATATTATACATACAACGGTCATTTTTATT CACTAATACACTCAGACTATGACCTGCTCATGAACACTACCGGTGGAGTA TTCTCGTAAGTCTATGGTTGATGTAGAGCTTTCCAACAGTCCGTTGGTCG GCAGGCATCCTAGAGTGTAGTAATAGTAGTAACAGTAGTAATACGTTTAA TCCCTTTGGGGAAAGAGAGAGAGATACAGGACTATTTGGCCGAGGTCTCT GAGCTCACATGACACATGACACCCAGCATGAACCAAATTGACTATATCTT CCCCATGCGCTATCCCATGCCCTATAAATAGAAATTTTACAGCTCCATGC CAAAAGAGAGAAGAGCCAATGGCCACCGAGCTCCTGTGGGAACGAGAGAA AAAAAACGACGATTGACCAAGTTTCTTGGCACAAAACGTTTAGGTGTTCC CCCGTTCGTTTCGTTTGTTTATGTCCTTGATGATAATTCCCACAATTATC CTTGAAGGTTGGTGATAGTGATGTCAGGCGAAAATCCGGACGACGACGAC GTTCCCGCGTGTTTTTTACTATTAGGTACAACGCGTCCCGTCACCCCTTT TTGCAGGAGCTCATTCGACGAAGTGCTGTCGTGGAGAGAAGCGGACGCCG TTCTTGTGACGCCAATCAGGCACACGGGGACACCAGAAATTTGTCCCCTG GCTGGCACGCCTCACTCTTTACGGTACCCCGAGGAAGGGAAGAAGGAGGA TGATGACGGCGAAGAAGACTTGCCGATGGAGAGAAACGACCGTGTGGACA CGGAAGATTGTAAAAAGTACGAGGAAGGCGAGCGCTCGTCATCCTCCTGC AGAGGAGATACTTCTGATGCGTTATCGGAGGACTTTTCTCAGGAGGAAGG GGGAGGGGGGGGGGAATATTCGGCATCCCCTCAACAAGACGGGACTTCGC GCTCTCGAGGACGTGACCCTCGCGCGTCGGAAAAGAAAAGGAAAGAAAAG GAGAAGGAAATAAGAAGTGGCCGATCGCGCTCCCACCGGAGAGAAGAAGG AGAAGACGAGGGAGGCGAAGACGAAGGCGAAGGAGGGGGGCGAAGCGGCG GGGTTGAGGCAGAGGCCGAAACTCCCTCCTTCGTCTACCAGAGGAGGAAG TTTATCCTCCTGAGCGCGGTGACTGGCGAGGGAGGAAACGGAGACGGAAA GAAGGAGGAGAGAAGAACTATAAGAGAGGAAACATTTGGGCTGGTCGAGC TCCCAGTGGGATGGCCGTTGGGATGGTGAGCGTTTTGAGCGGGGAGGGTA GGAGGCGTTTTGCTGCGCAATCTCAGTTTTCGGTCTTTGTCTCGTGTTTG GCCGCGCCTGAACGAGCGCACGCACTCATGTAATATGTTGTTCGGTATGG AGTCATTTTGATATCGATTAATAGTATGGCGCTCTGTGAACGAGCGTAGC AGACAGGTGTCTGACATCTTTCTTCGCCCGTGTGTCCGCGTCAATTTCTG GGTTCGTCGTTTCTCTCTCTTGTGATTCCCTTCGCTAAGAGCGGAGCCTT GCCTTTGAAACATCCATCCTTCTAGTATGCATTGATTATATCGTGGCAAG TCACAAACTGCAGTGTGCTGTACGACCCTAGTCACACGATAAGACTTTAT TACGGGGTTTCCCGCTAAAGGAGGCCGGTTGCTTATGAAAGCAGGGGGGT GATGCCACCGAAAGGAGATACGTAAATATACGCGCGACACGCCCGTACGC AGCTCAATATGCTATACGTGGGTCGTGATTTGATATAAAGTATTCTCCTT CCCGATGGCCATTCCCGTCCAGTCCCGGTCCTGAGTTGTCCCGCGGCATG TGTTGTCCCGACACCAATAAAATAATATCATACCTTGCGCGCCCTTTCAT GGTACATATATATATATATATATATATATATATATATATGAGAGAGAAAG AGAGATGCTCTAGAAGCATACTTAATTTATTATAATATATTTGTTGAATT AACCTCCGCGTGAGTGACGTGGGACGGCATTATGGGGGGTCTCGCTCGCC AGGTACCTGGAGGCCAAGGGGCTGACAGCGCAGGACGTTTCGCGGGGGTC GGCACTTTACGGGGAAAATTCAGTTCACGTGGAGCCGCCGACATTCTGGC ACCACTTGGGCCAGAGGCTCACTAGCCCCTTTGTCGTGTTCAGTCTCTTC AATCAGGTTCGAGGGCGAGATGTACCTTCCTGACCCCAACGCCGCCCGCT CGCACGGAACTTTTGAGTCTTGCTGGGGGAGGTCGAGTTCGGTCTGCCCG TTAAAGCGAAAGCTTGATCCAGCGTCTTGTCTTTCCCCCTCGAGCATGTT TCCCTGCGCAAATGTTAAATATACCCGAGGGTTTGTCGCGCTTTCTTTCG ACATAACGTTGGTGGTAGGCGTACCCTCCCTCTCTCCCTGTAACCAACAA ATCCAACCAACCAAATTTTCTTGCCACCCCTGAGCTGGCCAATTAGAGGC CTGGTGAGTCCGTAACCAGCCAATTAGATCCCTGACTAGCCCGCGAGAGC CGTGGGCTTGACGTCCCTGTTTGGGCAAATCCGAACGAACCGCGTGAACT GCTACAAGGTCCTGTGGATGCTAGAGCTGTATTGGCTGAAGGCAATGGTA GCCATCTTCGAGGTGTTGGCGGTTGAGGCGGGGTTCGTGGCTGAGGCGGA GTGGCGGAGGAGGCAGCTCGGCATTCGCGCCGTCCAGGGGGGACAGGATG CTCCGGCGAACAAGTAAGAGGAGCGCGGCAACAAGCTTTGCTCGCTTTTC GTAGTGAGATGGATTAAATTATGTTGTCCATTCCCCTTTGTCTTACCCTC CTATTTCTCTCTCTCTGGTGCACTCGTGACGTTTTTGTCGTCCGTCGTCG GGTCAAAGAGATAATAATAACGGCTACTTGAGGGGTGCTCGTTCAACTGT AGATAGTACAGTACTGTAAAAAGCATATTATTTTTATACTATTATATGTT ATAATGAAATATACTGTATTTACTATTGGCCGTCTCGGTATAGTACGTGA GACCTCTCGTTTCGCGCGATGTGCCCTATATCTACACACCTCAGTATACC TCAGTATATTTAGACTATGACCTACCCCCCTCTCAAAAAAAGGGTGAGGG CTTGGCGGGATGGAAAGTGGGTTTCCATTCCCGTGGAAGGCATGCGGCCG GGTGATCTCGTGTCGCTGAAGGCCGGAGACGCGTCAACCGCTGAACGGAA GGATGACATCATCGCTAACACGGCGGGAGAAGGAAACGGAAAAGTGCAGT CGGCGGTGTACGACGTCCCGGCGGACATGCTGCTGATCAAGGGCACCGCC GTGGTCATCGAGGCGAGCCTGACCGGCGAGAGCGTTCCCCAGATCAAGAC ATCTCTGGCAGCGGAGCCAATCGACTTCGAAGACGTGCTGGATATGACGG GGGTGAGGGAGCGAGGTGTATGTCGTATGGCGTATGACGCAAGGCACCGG GACATAGTGGTCGGAATCTCGGCTTTATTTTTACAGCTTGTGTATAGAGT ATAGAGCTACGGCGTCCTATCTATGTATACTATAGATCAAAGGACGGCGG TAATAATTGATATATTTCCCTTTGGAGGTTTTCCTTCAAAATGCGTTAGG TGGTACTTTACACCCTCCGAATGAACATTCAGGTCTTTCGTCGACTCGTC GGTGCTGTGTTGAACTTTGATTTGTTGAATGTTGAATTGATTGGTTGAAT TGATTGGTTGACTGGTATCTGGTACTTTTCTCGATCTCAGGAGAAACGAG GTCGATCTCCCCCGCCGCCCTCATTTTGGGCCTTCGTGACTCTGATACGT CCTTTCCTCTGCCGGGCAGAGGCACTCGAGCCACGTCCTGCTGAGCGGCA CGTTATTGTTGGACAACACGGATGGAATCCTCGACGAAACGGAACAACCA ACCGACGGGGGATGCACCGCGTTCGGGTCACCCTCAATACCAGGTGAGGC GAACCGGAGATCAATTTTCCTTTCCCCCCTTGGAGTACAGTAAATACTAG TATATAATACTAATAATACTATTAATAATGTTAATACTATTGTAAAGCCT CCTCCTCTCTCTCCTCTATAGCAGTTACATCTTTGCGAAGAAGTGGCGAC TGATTGGTTTATTTATGTTAAAGAAAGAAGAAAATAAAAATGAGGCTCAT GCGGTGTGCGTCTAAAAAATACCCATCTAGAGAGAAGTATTTCGAGGAGA TAATGACGTCGGTCCCACGACAGTCGATTCGAGGGGACGACGCCTCTCCC ATCCATTAACAAAGTTTATTGACCTAACAAAGTGTACATGTAACAGAGTC GACGCCGGATGGAGGCGCGCTGTGCTTCGTCTTGCGGACGGGGGTCTATT CCTTCCAGGGCGATCTCCGAAGAATGATCGACTTCGGCAACACCCACGAC GTTCGCGATCAATCCAAGGATGCGGGTGGGGTTGCTCGCATTTCTCTCGC TGGTCGGGATAAATAAATTCGCGGTGTAACTCGGCGTTCGGGATGAATCG ACTTTCAGCTTGTGCATTCTAATCCGGTCTGGGCCCTTCTTGGGTTCTTC TTACTGACACAAGTATTCCCCATGACTACGTCTACGCAGCATGCTCAGAG GCTTCAGAGTTTTGGGAGTTTTAGGGTTTCTATCGTGTTCGACGCGTTCG ACGTGTTCGACGCAAAACTATGTTTTTACAAAAGCCCCGTCTTAGCCTTA CCCTCACCATCGAGATCCTTCTGGCTCTTTGCAACAAACACTCTGGCCAC TGCGACACCGTCTCTGCGGAATTTTTACCAACGGACGGTAGTGTATATGG TGGTTTTGCTGTTACTCTAGCTGTCCTACCTGTCGTAGCTATCGTGCTAT CCCGAACGTTTGAGCCTCCCCCGCTTTCAACTCAGTTTTCCATGAAATAA TACAGTAAACAGTTAGTCAGGGAGATGCAGAAACTAACGCAAGGTGGCGG TGGTGATGTGATCGTCTGTGTACTGTGCGCGCGGCAGCGTACCTGCTGGG TTTTCTTTTATCGTTTGCGGCGTTATCCTGTTGCCACGTGGTGAGGGAAG GGCTCAAGTCCAAGCAGGTTTCCGGCTTCCGGCTCCTCGTGCAGGTGAGG AAAACTTGATGAAATCTCTGCCGATAAATAGTCGATCGGAATCGAACAAG AGATCGAAATCGCAACTTAACTTTGAAGTCGAAAACCGGCGGCATGAGGC GGAGGGGCCCCGACCTCTCGATATCTTTTTTTAATCGATACCTTTTTTAA TCGATACCTTTTTAAAAATAGCACATCGCACGCTCCGGGTGCTTTCGTCG TCCATCCATCCTATCGACCGGTTCATTCGTTTATTACTTACACCAGCTTT TCTGTTCGGGGGGTGTGGGTCCTGCTCGCGCGTGTGGCGCATCGCTTATC GCCCATCGCTTATCGCGTAGTGCGTGAGAATAATTTCCTCGGTAGTTCCC GAAGACCTGGCGTTGGAGTTGAACCAGTGCCTCAGGAACGGGGTGCTTTC GCTGCAGGGAGATCACGCGTTAGCGTGCACGGAGCCCTTCCGGATACCGC TCGCCGGAAAGGTGGGAAAAATAAGATCAAAATAACAAAAATATCAAGAT CAAAACACACATACTGTACTAATAGCAAAAACAAGATCAAAACAAAACAA ATAATCACAGATGACGATTTTGTGCACAGAGGTAGTATTTTACACATTCG AACCTGACGATAGTGGATTCCCTGGACTGCACCTCTTATGGTCCTAAGAA GGCGTGGATGATCGGAGGGGATAAATGAGTTCCTATGTTTTTAAATAAAA ACAATATGAATAACAAAAACAATATCAAAACAAAACAAAACAAAGTAATA ACTTAGTCATAGTTCTCCTTTTCTTTTTCCTTCTCGTACCCTTGGGCATC TTCTGCCGCCGTGGTGAGGTAGACCTCTCCGTGGTAGGGTAGACGTCTAT TACAACGTAGGGCTCGGACTAGGAAGCCTCGATCGGAAGGGGAGTTTGAA GGGTGCACCCGATTCGGTTTGACTTGGTTCATTGTTGATACAGTATTCCC CACGCGCGGTACAACATCAACAACCTTACACAAATGCTTACCGGTGTGGC CTAACGCGAGAACTGCGGGACGAAGGCCAATGGACCGACTGTGACAAAAC CATATATATATAGAGAGAGAGTTGCGCCAACCGCTGATTGGTCCACTATC CGGTCCGTTCCTCTCTCTGCGGACCCTGCGGACGGAATGAGATGCGATTA AATAGAGCGGGTGTTCGTTTGTAACACGACTAGCGTTCCTTCGCTCGCGT TCGTTTTCAGGTAAACGTGTGTCTCTTCGACAAGACGGGAACCATCACGT CCGACAGACTTGCAGCCGAGACGCTGATCGCCCCTCGATCGCACCGGCCC GACGACCTTCCCGCGAGGGTGGACCTCGCTCGCTCGGGTGGAGGAGGCGT TTGCGAAACCGGGGACGACCCGGAGATGTACCCTGGGGTTGTCGACGACT CGAGGGCGGTTTTACCGGCGGAGGTACACGAAAGCCCCTGCTGCTCGCTC GCTTGTTCTAGTTTTGTTTTTGCTCGATGTTTTTCGCGATATATGCTGTA CATAGACTGGCAGGCTCTATCGCCCAACAACTCTTTGATAAAATTTAACT CGCGTCTTGTTACCGTTGACGCATGAAAACAGCTGTAAAAGGAGCCATCG CCGAATTCAACGGTAGAGGAAGTGGGAAACGGATATATCCTCGACCGGCG ATTGGATCGATGGAAGGGGACAGAATTTTCCGCTTTTGTACCCAAACCGT ATGACTCAAGTGACTTTACTTGTTTCCGATCGAAACCACCGCTCCATTAA TAGAAATAAGCGTTTTCCTTCTGCCATGCCATGTCATGCCATATCAGAAT TGCACACTACGGCACTAGCAACAAGTCAAATTTTCTTTTGTTGCTTTTGC GCATCGACGGCACGGACAGATCGTCCTTGCCGGGTGCCACTCGCTCACGA GCGTGGACGGGGCCCTGCGTGGTGACCCCCTTGAGTCGTCGGCTCTGGAG GGGATACGCTGGGACTGGAACGCTACATCCTACATCGCGCGCCCTCGAGA CCTCTCGAGTTCCGACGGAATTGACGAACACATCGACGACACCAAGTCTA AAAGAAAACAGAACGAGGCCAGGGCCGCGTCGAACTCCGCGGATGATTCT GGAAGTGTAACCGCTGTTGACAGTTCCGCCCACGGTGGCGGCGGTGACAA TGAGAAGCGACAGAAAGAGTCATATATCGGCAATGCGGAGATCAGTGTAC GAGTCTGGCGGAGGCACGCGTTCAGCTCGCAACTTCAACGGATGAGCGTC GTGGCTGAGGTGTCATCGTCGGGGAGCGGCGGACTCATCGCGGAAGCCGG GGTGCCAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12681:93..8202-

>mRNA_H-elongata_contig12681.1990.1 ID=mRNA_H-elongata_contig12681.1990.1|Name=mRNA_H-elongata_contig12681.1990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4866bp|location=Sequence derived from alignment at H-elongata_contig12681:93..8202- (Himanthalia elongata Himel1 dioecious)
ATGTACGCTATGGCAATCCGACGCGTCGTGGCTACCGTAGGTGAACCGCT
GCGCTCCGCGAGGGCCCGGCGAGTGCGCCTGTTGGCAGCCGTGGCGGCAG
AGATATCGTCATCGAATCTTGCCGAGGAGGTCGTGGGTCCCGCGGCGCAG
GCGGCCGCTCGTGACGCGGGGGAACTAATGCCGTTTCCGTATCTCCCCAG
CGTGGGAGCAATGCTGCTGACGCTCATTGCCGTCACCGCCCACGTGTTGC
TGGTCCTCGGGAGGCGGTGGTCCGTTCGCTTCAATGCTTGATGTACGCTA
TGGCAATCCGACGCGTCGTGGCTACCGTAGGTGAACCGCTGCGCTCCGCG
AGGGCCCGGCGAGTGCGCCTGTTGGCAGCCGTGGCGGCAGAGATATCGTC
ATCGAATCTTGCCGAGGAGGTCGTGGGTCCCGCGGCGCAGGCGGCCGCTC
GTGACGCGGGGGAACTAATGCCGTTTCCGTATCTCCCCAGCGTGGGAGCA
ATGCTGCTGACGCTCATTGCCGTCACCGCCCACGTGTTGCTGGTCCTCGG
GAGGCGGTGGTCCGTTCGCTTCAATGCTTGGAGCTCATTCGACGAAGTGC
TGTCGTGGAGAGAAGCGGACGCCGTTCTTGTGACGCCAATCAGGCACACG
GGGACACCAGAAATTTGTCCCCTGGCTGGCACGCCTCACTCTTTACGGTA
CCCCGAGGAAGGGAAGAAGGAGGATGATGACGGCGAAGAAGACTTGCCGA
TGGAGAGAAACGACCGTGTGGACACGGAAGATTGTAAAAAGTACGAGGAA
GGCGAGCGCTCGTCATCCTCCTGCAGAGGAGATACTTCTGATGCGTTATC
GGAGGACTTTTCTCAGGAGGAAGGGGGAGGGGGGGGGGAATATTCGGCAT
CCCCTCAACAAGACGGGACTTCGCGCTCTCGAGGACGAGCTCATTCGACG
AAGTGCTGTCGTGGAGAGAAGCGGACGCCGTTCTTGTGACGCCAATCAGG
CACACGGGGACACCAGAAATTTGTCCCCTGGCTGGCACGCCTCACTCTTT
ACGGTACCCCGAGGAAGGGAAGAAGGAGGATGATGACGGCGAAGAAGACT
TGCCGATGGAGAGAAACGACCGTGTGGACACGGAAGATTGTAAAAAGTAC
GAGGAAGGCGAGCGCTCGTCATCCTCCTGCAGAGGAGATACTTCTGATGC
GTTATCGGAGGACTTTTCTCAGGAGGAAGGGGGAGGGGGGGGGGAATATT
CGGCATCCCCTCAACAAGACGGGACTTCGCGCTCTCGAGGACAGGAAACA
TTTGGGCTGGTCGAGCTCCCAGTGGGATGGCCGTTGGGATGAGGAAACAT
TTGGGCTGGTCGAGCTCCCAGTGGGATGGCCGTTGGGATGGTACCTGGAG
GCCAAGGGGCTGACAGCGCAGGACGTTTCGCGGGGGTCGGCACTTTACGG
GGAAAATTCAGTTCACGTGGAGCCGCCGACATTCTGGCACCACTTGGGCC
AGAGGCTCACTAGCCCCTTTGTCGTGTTCAGTCTCTTCAATCAGGTACCT
GGAGGCCAAGGGGCTGACAGCGCAGGACGTTTCGCGGGGGTCGGCACTTT
ACGGGGAAAATTCAGTTCACGTGGAGCCGCCGACATTCTGGCACCACTTG
GGCCAGAGGCTCACTAGCCCCTTTGTCGTGTTCAGTCTCTTCAATCAGGT
CCTGTGGATGCTAGAGCTGTATTGGCTGAAGGCAATGGTAGCCATCTTCG
AGGTGTTGGCGGTTGAGGCGGGGTTCGTGGCTGAGGCGGAGTGGCGGAGG
AGGCAGCTCGGCATTCGCGCCGTCCTGTGGATGCTAGAGCTGTATTGGCT
GAAGGCAATGGTAGCCATCTTCGAGGTGTTGGCGGTTGAGGCGGGGTTCG
TGGCTGAGGCGGAGTGGCGGAGGAGGCAGCTCGGCATTCGCGCCACTATG
ACCTACCCCCCTCTCAAAAAAAGGGTGAGGGCTTGGCGGGATGGAAAGTG
GGTTTCCATTCCCGTGGAAGGCATGCGGCCGGGTGATCTCGTGTCGCTGA
AGGCCGGAGACGCGTCAACCGCTGAACGGAAGGATGACATCATCGCTAAC
ACGGCGGGAGAAGGAAACGGAAAAGTGCAGTCGGCGGTGTACGACGTCCC
GGCGGACATGCTGCTGATCAAGGGCACCGCCGTGGTCATCGAGGCGAGCC
TGACCGGCGAGAGCGTTCCCCAGATCAAGACATCTCTGGCAGCGGAGCCA
ATCGACTTCGAAGACGTGCTGGATATGACGGGGACTATGACCTACCCCCC
TCTCAAAAAAAGGGTGAGGGCTTGGCGGGATGGAAAGTGGGTTTCCATTC
CCGTGGAAGGCATGCGGCCGGGTGATCTCGTGTCGCTGAAGGCCGGAGAC
GCGTCAACCGCTGAACGGAAGGATGACATCATCGCTAACACGGCGGGAGA
AGGAAACGGAAAAGTGCAGTCGGCGGTGTACGACGTCCCGGCGGACATGC
TGCTGATCAAGGGCACCGCCGTGGTCATCGAGGCGAGCCTGACCGGCGAG
AGCGTTCCCCAGATCAAGACATCTCTGGCAGCGGAGCCAATCGACTTCGA
AGACGTGCTGGATATGACGGGGAGGCACTCGAGCCACGTCCTGCTGAGCG
GCACGTTATTGTTGGACAACACGGATGGAATCCTCGACGAAACGGAACAA
CCAACCGACGGGGGATGCACCGCGTTCGGGTCACCCTCAATACCAGAGGC
ACTCGAGCCACGTCCTGCTGAGCGGCACGTTATTGTTGGACAACACGGAT
GGAATCCTCGACGAAACGGAACAACCAACCGACGGGGGATGCACCGCGTT
CGGGTCACCCTCAATACCAGAGTCGACGCCGGATGGAGGCGCGCTGTGCT
TCGTCTTGCGGACGGGGGTCTATTCCTTCCAGGGCGATCTCCGAAGAATG
ATCGACTTCGGCAACACCCACGACGTTCGCGATCAATCCAAGGATGCGGA
GTCGACGCCGGATGGAGGCGCGCTGTGCTTCGTCTTGCGGACGGGGGTCT
ATTCCTTCCAGGGCGATCTCCGAAGAATGATCGACTTCGGCAACACCCAC
GACGTTCGCGATCAATCCAAGGATGCGGCGTACCTGCTGGGTTTTCTTTT
ATCGTTTGCGGCGTTATCCTGTTGCCACGTGGTGAGGGAAGGGCTCAAGT
CCAAGCAGGTTTCCGGCTTCCGGCTCCTCGTGCAGCGTACCTGCTGGGTT
TTCTTTTATCGTTTGCGGCGTTATCCTGTTGCCACGTGGTGAGGGAAGGG
CTCAAGTCCAAGCAGGTTTCCGGCTTCCGGCTCCTCGTGCAGTGCGTGAG
AATAATTTCCTCGGTAGTTCCCGAAGACCTGGCGTTGGAGTTGAACCAGT
GCCTCAGGAACGGGGTGCTTTCGCTGCAGGGAGATCACGCGTTAGCGTGC
ACGGAGCCCTTCCGGATACCGCTCGCCGGAAAGTGCGTGAGAATAATTTC
CTCGGTAGTTCCCGAAGACCTGGCGTTGGAGTTGAACCAGTGCCTCAGGA
ACGGGGTGCTTTCGCTGCAGGGAGATCACGCGTTAGCGTGCACGGAGCCC
TTCCGGATACCGCTCGCCGGAAAGGTAAACGTGTGTCTCTTCGACAAGAC
GGGAACCATCACGTCCGACAGACTTGCAGCCGAGACGCTGATCGCCCCTC
GATCGCACCGGCCCGACGACCTTCCCGCGAGGGTGGACCTCGCTCGCTCG
GGTGGAGGAGGCGTTTGCGAAACCGGGGACGACCCGGAGATGTACCCTGG
GGTTGTAAACGTGTGTCTCTTCGACAAGACGGGAACCATCACGTCCGACA
GACTTGCAGCCGAGACGCTGATCGCCCCTCGATCGCACCGGCCCGACGAC
CTTCCCGCGAGGGTGGACCTCGCTCGCTCGGGTGGAGGAGGCGTTTGCGA
AACCGGGGACGACCCGGAGATGTACCCTGGGGTTATCGTCCTTGCCGGGT
GCCACTCGCTCACGAGCGTGGACGGGGCCCTGCGTGGTGACCCCCTTGAG
TCGTCGGCTCTGGAGGGGATACGCTGGGACTGGAACGCTACATCCTACAT
CGCGCGCCCTCGAGACCTCTCGAGTTCCGACGGAATTGACGAACACATCG
ACGACACCAAGTCTAAAAGAAAACAGAACGAGGCCAGGGCCGCGTCGAAC
TCCGCGGATGATTCTGGAAGTGTAACCGCTGTTGACAGTTCCGCCCACGG
TGGCGGCGGTGACAATGAGAAGCGACAGAAAGAGTCATATATCGGCAATG
CGGAGATCAGTGTACGAGTCTGGCGGAGGCACGCGTTCAGCTCGCAACTT
CAACGGATGAGCGTCGTGGCTGAGGTGTCATCGTCGGGGAGCGGCGGACT
CATCGCGGAAGCCGGGGTGCCAGAGATCGTCCTTGCCGGGTGCCACTCGC
TCACGAGCGTGGACGGGGCCCTGCGTGGTGACCCCCTTGAGTCGTCGGCT
CTGGAGGGGATACGCTGGGACTGGAACGCTACATCCTACATCGCGCGCCC
TCGAGACCTCTCGAGTTCCGACGGAATTGACGAACACATCGACGACACCA
AGTCTAAAAGAAAACAGAACGAGGCCAGGGCCGCGTCGAACTCCGCGGAT
GATTCTGGAAGTGTAACCGCTGTTGACAGTTCCGCCCACGGTGGCGGCGG
TGACAATGAGAAGCGACAGAAAGAGTCATATATCGGCAATGCGGAGATCA
GTGTACGAGTCTGGCGGAGGCACGCGTTCAGCTCGCAACTTCAACGGATG
AGCGTCGTGGCTGAGGTGTCATCGTCGGGGAGCGGCGGACTCATCGCGGA
AGCCGGGGTGCCAGAG
back to top