mRNA_H-elongata_contig12680.1988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12680.1988.1
Unique NamemRNA_H-elongata_contig12680.1988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12680.1988.1 vs. uniprot
Match: D7G1T8_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T8_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.250e-37
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   76 QVKILPTLVCFIDGIAVHSIIGFDGLTAGLPDDKLDEWPLSNLARELALAKVIVYSQHDTPEGSGPREKGSSFGMIRAGVNDGDCFDDD 342
            QVKILPT++CFIDG+AVH+IIGFDGLTAGLP DKLDEWPLSNLARELALAK I+YSQ D PEG+GPRE+G   G IRAG+NDGD  D+D
Sbjct:  228 QVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGDFSDED 316
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BLAST of mRNA_H-elongata_contig12680.1988.1 vs. uniprot
Match: A0A835YQ77_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ77_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.940e-9
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   76 QVKILPTLVCFIDGIAVHSIIGFDGLTAGLPDDKLDEWPLSNLARELALAKVIVYSQHDTPEGSGPREKGSSFGMIRAGVNDGDCFDDD 342
            QV++LP +V F DGI+V  I GF+GL         DEWP  NLA+ LALAK I Y+  D  +      K    G+IRAG  D +  D+D
Sbjct:  231 QVRVLPCVVIFRDGISVAQIQGFEGLNEEQEKGTEDEWPTGNLAKRLALAKAIDYTASDALD---QMRKAQVSGVIRAGFGDAELSDED 316
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BLAST of mRNA_H-elongata_contig12680.1988.1 vs. uniprot
Match: A0A482RU92_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU92_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 3.350e-5
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   79 VKILPTLVCFIDGIAVHSIIGFDGLTAGLPDDKLDEWPLSNLARELA----LAKVIVYSQHD 252
            ++ +PT+VCF+DGIA   ++GF+GLT GL +   DEWP   LAR L     L K +V  + +
Sbjct:  244 IRTMPTVVCFVDGIAQDKVVGFEGLTEGLEEGHEDEWPTVRLARLLVSKHMLRKDLVLDEEE 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12680.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1T8_ECTSI7.250e-3778.65Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A835YQ77_9STRA4.940e-943.82Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A482RU92_9ARCH3.350e-543.55Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12680contigH-elongata_contig12680:86..2416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue7e-34
Seed eggNOG ortholog2880.D7G1T8
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007010,GO:0007017,GO:0007049,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016049,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022402,GO:0030865,GO:0031122,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031683,GO:0032506,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042221,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043622,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048285,GO:0048487,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051211,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0055086,GO:0060255,GO:0061640,GO:0065007,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0080090,GO:0097435,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902410,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-07_004190.1
Exons2
Model size1741
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12680.1988.1prot_H-elongata_contig12680.1988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12680 1479..2383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.1202164-UTR-H-elongata_contig12680:85..14781622929751.1202164-UTR-H-elongata_contig12680:85..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12680 86..1478 -
1691679143.4208434-UTR-H-elongata_contig12680:85..14781691679143.4208434-UTR-H-elongata_contig12680:85..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12680 86..1478 -
1622929751.15796-UTR-H-elongata_contig12680:2383..24161622929751.15796-UTR-H-elongata_contig12680:2383..2416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12680 2384..2416 -
1691679143.4473572-UTR-H-elongata_contig12680:2383..24161691679143.4473572-UTR-H-elongata_contig12680:2383..2416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12680 2384..2416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.1318166-CDS-H-elongata_contig12680:1478..15981622929751.1318166-CDS-H-elongata_contig12680:1478..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12680 1479..1598 -
1691679143.4309304-CDS-H-elongata_contig12680:1478..15981691679143.4309304-CDS-H-elongata_contig12680:1478..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12680 1479..1598 -
1622929751.144219-CDS-H-elongata_contig12680:2188..23831622929751.144219-CDS-H-elongata_contig12680:2188..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12680 2189..2383 -
1691679143.4389415-CDS-H-elongata_contig12680:2188..23831691679143.4389415-CDS-H-elongata_contig12680:2188..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12680 2189..2383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12680.1988.1

>prot_H-elongata_contig12680.1988.1 ID=prot_H-elongata_contig12680.1988.1|Name=mRNA_H-elongata_contig12680.1988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MHVYILLYLLPRATQVKILPTLVCFIDGIAVHSIIGFDGLTAGLPDDKLD
EWPLSNLARELALAKVIVYSQHDTPEGSGPREKGSSFGMIRAGVNDGDCF
DDDA*
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mRNA from alignment at H-elongata_contig12680:86..2416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12680.1988.1 ID=mRNA_H-elongata_contig12680.1988.1|Name=mRNA_H-elongata_contig12680.1988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2331bp|location=Sequence derived from alignment at H-elongata_contig12680:86..2416- (Himanthalia elongata Himel1 dioecious)
CTTTTTTTACTTATATAGTTCGTATATGTATATATGCATGTATATATATT
ACTGTACCTTTTGCCTCGGGCCACTCAGGTGAAAATCCTGCCTACACTCG
TTTGTTTCATCGACGGCATCGCCGTTCATTCCATCATCGGCTTCGACGGG
CTTACGGCCGGCTTGCCGGACGACAAGCTCGATGAGTGGCCGTTGTCCAA
CCTCGCCAGGGAGCTGGCGCTCGCGAAGGTGCTCGATAGTTGTGGGTGTT
TCCATCAACCGGTACCGCGGTCGTGCACACGCTTTTTTACGTTCCTCGTG
GTAAAAGTGGTTGTGTCTACGACCCGCGCAACAACCATGTGTTGTGGCCG
ATTCGAAGTCTCTCAGTTATGCGTTCGAATGGCCTGGCGCACCGACAGGC
CTTGCAAGTGTCCCTTTGTTTACGGCTGTGCAGCCGATTTTTTTTTTTTT
CTCCCCCCAAGGGGATATGGAAACAAAAGTTTTCACGAGAAAAAGAGGCG
TGTGTACCTCGCAAGATCTCGAGGCCACGGCCTCGCGCATCTTCGAGGGC
CACCCGTCTCTTCTTTGGGACGGGGGGGACGGGCGGAAGCCGCACCTTTA
GTGGGTACTGTGATAAAATATGTCCACGTTACGGGAAAAAGCACCACGTA
AAGGGGACTGACCGTTGCCAGGGGTAAAACTGCGGCTACCCAGGCTCGAG
CATATAATAGGAGTGAAACCGTTCGTCCGCGGGGGGGATGGCATCACATC
TGCATCCCCCCTCCCCGCAAACATTGCCCCTTCCCCCCTCCCCCCCCTCT
TTGACGTTTCGCTACCAGGTGATCGTCTACAGCCAACATGACACTCCGGA
GGGCTCGGGCCCAAGAGAAAAAGGCAGCTCGTTCGGGATGATACGAGCAG
GCGTCAATGACGGCGATTGTTTTGACGACGACGCGTGAATCCTCCCGTTG
TCGCCAGAGAAAACGAATCAATTTCCTCACCGCAACGAAGCGACGACTCA
TCACATTGGTACATAGTAGTTTTACATATATACTATTAATAGTAATGCGA
GAGAGACCGCCTTTCCAAACACATGGATACTGTAGTAACTAATCCACGGT
ACTTTGTATGGTACAATTTGTTGTCGCGATTCGCTGCTCAAGGGACGTTC
TTCTCGAGATTGAGCATGAAAATTCGATTTATTATGGAAAAAAAAATATA
GCTCTAGGGTTTTGTGGTTTTAACTTTTTTTTTTTTAGCCGCGGGTCTCA
CCATTCTGAGTTGTCCTGAGTTGTCCTGCAGTTTTCGATATGCTGTAAGA
CATCCCCCCCTTTTTTCCCATACTACCACGAACTAACTGCTCTTTTTACA
ATTATTTTTTATTTATTTTTTACCCCGAGCGCTGAAATTGTACTGCGCCC
GTGTATTGTGTATTTCACTATTACTATTGATACCAGCAGGAAACGAAAAA
GAGAGGCATTACAATTACAATCAAAGAGCCTTAGTCTAAAATAGTGAGGA
AGATAATGACGTGAAAAATAAAGTATTAGGTTTCTAGTATGTATGGAAGG
AGCTGAGTCGCGAAGCGACGTGTGCCGTGGGTCAACAGGTTCGATGTGGC
TACTCCTTCATAACATAATTACCGGTATAGACGTACTGTACCCACACCTA
CATTCTTGTTCAAAAACATATACACTCAATCAAACCCTCTCCGAACATTC
ACACTATATCCTATATACTTCATTTACACCACGATAGAGGTGAATTATCC
CATAATTAAGTTGATTTCAAAATCTGGTGTGGAATGGAGAAAAATAGGTA
TACGATACTGCAGTATTCGGAACGAAAACGTCAATAATAATGGTATACTG
TATGATAATAATAATCGGAAAAAAGCGCCAGTTGAACGATTGGTTTATAA
TATTTATACAGTAAATGTATCTGTTGACGGAGAAAGGTGTTGCGTGAGAG
AGTGACGAAGTTGTTTGCATCGCGATAGAAAATTGTTAGATAACTTAGAT
CCACCCCTTGGAACCACAGGCGGTATTATTGTAGATGGTCGATCTTGCGG
AAATGGTTTTTCCCTGTCCTCTTTGGCGTCTAGGAATCTGGTCTCGCGAA
ACGGACTTGGCTGTTTCGTCCCGGATTTAATTTGGTGCTTACCTCTCCAT
GTGAAAGTGGTCGATCTTGCGGTACTACTGTAGTAGATGGAATTTGGTAA
CAACCTATTATTAGTCTAATCGCTAGAACGTTGAAATTGTGATGGCTTCA
TCATCCCCACTATTGTATTATATTAATAATACTATTACTGTATCACAATA
GATACTATACGAAATGATGCTGTCACCCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig12680:86..2416-

>mRNA_H-elongata_contig12680.1988.1 ID=mRNA_H-elongata_contig12680.1988.1|Name=mRNA_H-elongata_contig12680.1988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig12680:86..2416- (Himanthalia elongata Himel1 dioecious)
ATGCATGTATATATATTACTGTACCTTTTGCCTCGGGCCACTCAGGTGAA
AATCCTGCCTACACTCGTTTGTTTCATCGACGGCATCGCCGTTCATTCCA
TCATCGGCTTCGACGGGCTTACGGCCGGCTTGCCGGACGACAAGCTCGAT
GAGTGGCCGTTGTCCAACCTCGCCAGGGAGCTGGCGCTCGCGAAGATGCA
TGTATATATATTACTGTACCTTTTGCCTCGGGCCACTCAGGTGAAAATCC
TGCCTACACTCGTTTGTTTCATCGACGGCATCGCCGTTCATTCCATCATC
GGCTTCGACGGGCTTACGGCCGGCTTGCCGGACGACAAGCTCGATGAGTG
GCCGTTGTCCAACCTCGCCAGGGAGCTGGCGCTCGCGAAGGTGATCGTCT
ACAGCCAACATGACACTCCGGAGGGCTCGGGCCCAAGAGAAAAAGGCAGC
TCGTTCGGGATGATACGAGCAGGCGTCAATGACGGCGATTGTTTTGACGA
CGACGCGTGAGTGATCGTCTACAGCCAACATGACACTCCGGAGGGCTCGG
GCCCAAGAGAAAAAGGCAGCTCGTTCGGGATGATACGAGCAGGCGTCAAT
GACGGCGATTGTTTTGACGACGACGCGTGA
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