mRNA_H-elongata_contig12679.1987.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: D7FHX1_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX1_ECTSI) HSP 1 Score: 208 bits (529), Expect = 1.430e-60 Identity = 100/172 (58.14%), Postives = 126/172 (73.26%), Query Frame = 1
Query: 4 GKYELHDAAIKGELERVKAILEDSTNNVNVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKGCDVNQRNLFYTT 519
G+++LHDA + G++E+VK+ILE + + VN RGPKN +PLHCAAKG+ P FYGSA V+R LL+EVK+ DI+ALDFGSWT+LHYACNY+RG+CA LLID GASL K+SAELQL+ LHLAARSGNL TV+KL++ GC+ +QRNLFYTT
Sbjct: 2 GRFDLHDACMAGDVEKVKSILEATPDKVNARGPKNRSPLHCAAKGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXFYGSAAVIRYLLDEVKDLDINALDFGSWTSLHYACNYNRGECADLLIDSGASLTKKSAELQLVALHLAARSGNLATVEKLIKNGCNASQRNLFYTT 173
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: A0A0D9RMC7_CHLSB (Transient receptor potential cation channel subfamily A member 1 n=24 Tax=Simiiformes TaxID=314293 RepID=A0A0D9RMC7_CHLSB) HSP 1 Score: 82.8 bits (203), Expect = 6.390e-13 Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LHDAA +G++E ++ I DS+ V N +TPLHCA + NQ E +L+SRGAN LR M PL +A +V+++LLE K DI+ TA+ AC + + +L++ GA K S + P+H AA SG+ ++ +L G
Sbjct: 67 LHDAAAEGQIELMEKITRDSSLEVLNEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHLAVQGTHNEVMKVLLEH-KTIDINLEGENGNTAVIIACTTNNSEALQILLNKGAKPCK-SNKWGCFPIHQAAFSGSKECMEIILRFG 221
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: TRPA1_MOUSE (Transient receptor potential cation channel subfamily A member 1 n=21 Tax=Muroidea TaxID=337687 RepID=TRPA1_MOUSE) HSP 1 Score: 79.3 bits (194), Expect = 7.970e-12 Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G++E ++ I+ S+ V N+ +TPLHCAA+ NQ E +L+S+GAN LR M+PL +A +G + V +L E K T+I+ TAL C + +L++ GA L K S + P+H AA SG ++ +L G
Sbjct: 68 LHHAAAEGQVELMELIINGSSCEVLNIMDGYGNTPLHCAAEKNQVESVKFLLSQGANPNLRNRNMMSPLHIA-VHGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSEALQILLEKGAKLCK-SNKWGDYPVHQAAFSGAKKCMELILAYG 222
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: UPI000154AD6D (Transient receptor potential cation channel, subfamily A, member 1, isoform CRA_a n=1 Tax=Mus musculus TaxID=10090 RepID=UPI000154AD6D) HSP 1 Score: 79.3 bits (194), Expect = 7.980e-12 Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G++E ++ I+ S+ V N+ +TPLHCAA+ NQ E +L+S+GAN LR M+PL +A +G + V +L E K T+I+ TAL C + +L++ GA L K S + P+H AA SG ++ +L G
Sbjct: 68 LHHAAAEGQVELMELIINGSSCEVLNIMDGYGNTPLHCAAEKNQVESVKFLLSQGANPNLRNRNMMSPLHIA-VHGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSEALQILLEKGAKLCK-SNKWGDYPVHQAAFSGAKKCMELILAYG 222
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: A0A1D5QMT1_MACMU (Transient receptor potential cation channel subfamily A member 1 n=2 Tax=Macaca mulatta TaxID=9544 RepID=A0A1D5QMT1_MACMU) HSP 1 Score: 77.8 bits (190), Expect = 2.450e-11 Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G++E ++ I DS+ V N +TPLHCA + NQ E +L+SRGAN LR M PL +A +V+++LLE + DI+ TA+ AC + + +L++ GA K S + P+H AA SG+ ++ +L G
Sbjct: 92 LHYAAAEGQIELMEKITRDSSLEVLNEMDDCGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHLAVQGTHNEVMKVLLEH-RTIDINLEGENGNTAVIIACTTNNSEALQILLNKGAKPCK-SNKWGCFPIHQAAFSGSKECMEIILRFG 246
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: A0A2H9SWI5_9BACT (Uncharacterized protein n=1 Tax=Parachlamydia sp. TaxID=2052048 RepID=A0A2H9SWI5_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 3.870e-11 Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNVNVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEK 480
LH AA G+LE VK +L +T+ +NV+ + T L AA+ + V YL++ GA+ + A K PL VA+ G + V+LLL + I+ + +T L +A + + L+++ A A + +PLH+AA++G++ +VK LL K
Sbjct: 239 LHVAAQAGDLESVKLLLPKTTDGINVKENYDSTSLFFAAESGKANVVEYLLNNGADANIPDAGKRVPLHVAAQAGDLESVKLLLPKTTG-GINVKENYDYTPLFFAVESGKANVVEYLLNNEADANIPDAG-ERVPLHVAAQTGDMESVKLLLPK 391
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: A0A7J8C4Q5_ROUAE (Transient receptor potential cation channel subfamily A member 1 n=3 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8C4Q5_ROUAE) HSP 1 Score: 76.3 bits (186), Expect = 7.440e-11 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G+++ ++ I+ DST V NV +TPLH AA NQ +L+S+GAN LR M PL +A G +VV++L E ++TD + TAL AC + +L++ GA K + + P+H AA SG + +L+ G
Sbjct: 68 LHHAAEEGQVQLMELIVSDSTCEVLNVMDNYGNTPLHWAAVKNQAGSVKFLLSKGANPNLRNNSMMAPLHLAVQNGHNEVVKVLTEH-RSTDTNLDGENGNTALIIACFQDNSEALQMLLNKGAKACKAN-KWGYFPIHQAAFSGAKKCMDIILKYG 222
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: TRPA1_HUMAN (Transient receptor potential cation channel subfamily A member 1 n=12 Tax=Catarrhini TaxID=9526 RepID=TRPA1_HUMAN) HSP 1 Score: 76.3 bits (186), Expect = 7.440e-11 Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G++E ++ I DS+ V + +TPLHCA + NQ E +L+SRGAN LR M PL +A + +V+++LLE + D++ TA+ AC + + +L+ GA K S + P+H AA SG+ ++ +L G
Sbjct: 67 LHYAAAEGQIELMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEH-RTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCK-SNKWGCFPIHQAAFSGSKECMEIILRFG 221
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: A0A091CSW5_FUKDA (Transient receptor potential cation channel subfamily A member 1 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091CSW5_FUKDA) HSP 1 Score: 75.1 bits (183), Expect = 1.570e-10 Identity = 57/161 (35.40%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDSTNNV-NVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKGCDVN 495
LH AA +GELE +K I+ S+ V NV +TPLH AA+ NQ E A +L++ GAN LR + M PL +A ++ ++L+E +T+I+ TA+ C+ + +L GA + +E + PL LA S + V LL KG VN
Sbjct: 128 LHHAAAEGELELMKMIISGSSCEVLNVMDNFGNTPLHWAAENNQVESAKFLLTEGANPNLRNSSMMAPLHLAVQGMYNEMTKVLIEH-SSTNINLEGENGNTAVMITCSKDNSEALEIL---GADMNVTDSEGR-SPLVLATASASWNIVNLLLSKGAKVN 283
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Match: UPI0003315695 (transient receptor potential cation channel subfamily A member 1 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003315695) HSP 1 Score: 73.2 bits (178), Expect = 6.920e-10 Identity = 52/157 (33.12%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 16 LHDAAIKGELERVKAILEDST-NNVNVRGPKNHTPLHCAAKGNQPEVASYLISRGANTELRTAFKMTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCATLLIDHGASLVKRSAELQLMPLHLAARSGNLGTVKKLLEKG 483
LH AA +G+++ ++ I+ DS+ VN+ +TPLH AA NQ E +L+S+GAN LR M PL +A +VV++L E T+++ T++ AC + +L+ HGA K S + P+H AA SG ++ +L+ G
Sbjct: 68 LHYAAEEGQIQLMEMIINDSSCETVNMMDNYGNTPLHWAAGKNQVESVKFLLSKGANPNLRNNNMMAPLHLAVQGLHNEVVKVLTEH-SGTNVNLEGENGNTSVLIACARDNSEALQILLKHGAKPCK-SNKWGCFPIHQAAFSGAKNCLEIILKYG 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12679.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12679.1987.1 >prot_H-elongata_contig12679.1987.1 ID=prot_H-elongata_contig12679.1987.1|Name=mRNA_H-elongata_contig12679.1987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp MTPLLVASFYGSADVVRLLLEEVKNTDIDALDFGSWTALHYACNYSRGDCback to top mRNA from alignment at H-elongata_contig12679:4015..7056- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12679.1987.1 ID=mRNA_H-elongata_contig12679.1987.1|Name=mRNA_H-elongata_contig12679.1987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3042bp|location=Sequence derived from alignment at H-elongata_contig12679:4015..7056- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12679:4015..7056- >mRNA_H-elongata_contig12679.1987.1 ID=mRNA_H-elongata_contig12679.1987.1|Name=mRNA_H-elongata_contig12679.1987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig12679:4015..7056- (Himanthalia elongata Himel1 dioecious)back to top |