mRNA_H-elongata_contig12672.1984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12672.1984.1
Unique NamemRNA_H-elongata_contig12672.1984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: D7FH74_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH74_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.060e-32
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            ARVPLL  TW+P++ C LLLASK+WQDL SWN EFS  YP+Y +K+I++LE+ FL A++WD+++SSSLYAKYYFALRS +    FRRRY  +L
Sbjct:  208 ARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKNINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 300
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A6H5JJI4_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI4_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.920e-31
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            ARVPLL  TW+P++ C LLLASK+WQDL SWN EFS  YP+Y +KSI++LE+ FL A++WD+++SSSLYAKYYFALRS +    FRRRY  +L
Sbjct:  456 ARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKSINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 548
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A1E7FWS6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWS6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.740e-29
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            A+VPLL  TWRPI  CALLLASK+WQDL SWN EFS+ YP + ++SI+KLE+ FL  ++WDL +SSS YAKYYFALRS      FR+RY  ++
Sbjct:  181 AKVPLLACTWRPIFMCALLLASKVWQDLSSWNIEFSSVYPQFSLESINKLELNFLRNVKWDLYISSSSYAKYYFALRSLVEKQDFRQRYNRMV 273
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A835YNR4_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.100e-28
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAILLQVERDALLCDGVAKDKL 336
            A VPLL +TW+P++ C LLLASK+WQDL SWN EFS  YP++ ++SI++LE  +L  ++WDL +S+SLYAKYYFALRS +    FRRRY  +   V+ DA   D V +  L
Sbjct:  393 AAVPLLATTWKPVVLCGLLLASKVWQDLSSWNVEFSTVYPEFSLRSINRLEHVYLAQVQWDLYISASLYAKYYFALRSLAEGRDFRRRYNCV---VQIDAPRADRVQERSL 500
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A7S1G1W2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G1W2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.230e-27
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   16 LLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            LL + WRPI+ C +L+ASK+WQDL SWN EFS  YP Y + S+++LE  FL+ L WDL +S S+YAKYYFALRS S    FRRRY +++
Sbjct:   50 LLGTNWRPILLCGMLMASKVWQDLSSWNVEFSTVYPQYSLASVNRLERAFLQTLRWDLYISGSVYAKYYFALRSMSEKKNFRRRYISMM 138
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A6U3CS23_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3CS23_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.540e-27
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    7 RVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAILLQVE 294
            +VPLL +TWRPI+   LLLASK+WQDL SWN EF+  YP Y ++++ +LE++FL  L+WDL +SSSLYAKYYFALR+      FR+RY  +++ V+
Sbjct:  159 KVPLLANTWRPIVMTGLLLASKVWQDLSSWNIEFTNVYPQYSLEAVHRLEIKFLRILQWDLYISSSLYAKYYFALRALVEKPDFRQRYNRMVVGVD 254
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A7S4J8M4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8M4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.170e-27
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            ARVPL+ STWRP+  C LLLASK+WQDL SWN EF++ YP + +++I++LE  FL  ++WDL +SSSLYAKYYFALRS      FRRRY  ++
Sbjct:  982 ARVPLVSSTWRPVFMCGLLLASKVWQDLSSWNIEFASVYPQFSLEAINRLEATFLRTVKWDLYISSSLYAKYYFALRSLLEKQDFRRRYNRMV 1074
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BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A7S3P0N5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P0N5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.540e-27
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAIL 282
            A+VPLL STWRPI+ C LLLASK+WQDL SWN EF+  YP Y + +I +LE++FL  ++WDL +SS+LYAKYYFALR+      FR+RY  ++
Sbjct:  556 AKVPLLASTWRPIVMCGLLLASKVWQDLSSWNIEFATVYPQYSLNAIHRLELQFLRMVKWDLYISSTLYAKYYFALRALVSKQDFRQRYNRMV 648
[Close]
BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A812XPB8_SYMMI (CCNY protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XPB8_SYMMI)

HSP 1 Score: 115 bits (289), Expect = 1.280e-26
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    4 ARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAILLQV---ERDALLCDGVAKDKLLPSRIFPS 360
            A VPL   TWRP++ C LLLASK+WQDL SWN E +  YP + +++I++LE  F   ++WDL +SSSLYAKYYFALRS +    FRR Y  ++LQ    E+ A+  + V K+ +L + +  S
Sbjct:  220 ANVPLTSKTWRPVVMCGLLLASKVWQDLSSWNIEIAQIYPQFTLQNINRLERTFCHHIKWDLYISSSLYAKYYFALRSLTEKSDFRRNYNTMVLQAPGAEQVAIRSENV-KETMLHTTLSKS 340
[Close]
BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Match: A0A6U4HVF2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HVF2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.310e-26
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:   10 VPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAILLQ 288
            VPL+ +TWRPI+ C+LLLASK+WQDL SWN EFS  YP++ +++I+KLE  FL+ + WDL +S SLYAKY+FALRS +    FR +Y   L Q
Sbjct:  205 VPLMAATWRPIVLCSLLLASKVWQDLSSWNVEFSQTYPEFGLQAINKLERIFLQDINWDLYISPSLYAKYHFALRSMTAQSNFRNKYVQTLQQ 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12672.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH74_ECTSI5.060e-3262.37Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A6H5JJI4_9PHAE4.920e-3163.44Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A1E7FWS6_9STRA8.740e-2961.29Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A835YNR4_9STRA6.100e-2853.15Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S1G1W2_9STRA1.230e-2757.30Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6U3CS23_9STRA1.540e-2755.21Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4J8M4_9STRA4.170e-2759.14Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3P0N5_9STRA4.540e-2758.06Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A812XPB8_SYMMI1.280e-2647.54CCNY protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6U4HVF2_9STRA1.310e-2656.99Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12672contigH-elongata_contig12672:2046..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D7FH74
EggNOG free text desc.regulation of cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG1675@1,KOG1675@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size838
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12672.1984.1prot_H-elongata_contig12672.1984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12672 2046..3120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.549526-CDS-H-elongata_contig12672:2045..21171622929750.549526-CDS-H-elongata_contig12672:2045..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2046..2117 +
1691679143.1072068-CDS-H-elongata_contig12672:2045..21171691679143.1072068-CDS-H-elongata_contig12672:2045..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2046..2117 +
1622929750.569434-CDS-H-elongata_contig12672:2318..23951622929750.569434-CDS-H-elongata_contig12672:2318..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2319..2395 +
1691679143.1206212-CDS-H-elongata_contig12672:2318..23951691679143.1206212-CDS-H-elongata_contig12672:2318..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2319..2395 +
1622929750.581319-CDS-H-elongata_contig12672:2525..27481622929750.581319-CDS-H-elongata_contig12672:2525..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2526..2748 +
1691679143.1374018-CDS-H-elongata_contig12672:2525..27481691679143.1374018-CDS-H-elongata_contig12672:2525..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 2526..2748 +
1622929750.592018-CDS-H-elongata_contig12672:3054..31201622929750.592018-CDS-H-elongata_contig12672:3054..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 3055..3120 +
1691679143.1471019-CDS-H-elongata_contig12672:3054..31201691679143.1471019-CDS-H-elongata_contig12672:3054..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12672 3055..3120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.6043413-UTR-H-elongata_contig12672:3120..35201622929750.6043413-UTR-H-elongata_contig12672:3120..3520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12672 3121..3520 +
1691679143.1555202-UTR-H-elongata_contig12672:3120..35201691679143.1555202-UTR-H-elongata_contig12672:3120..3520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12672 3121..3520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12672.1984.1

>prot_H-elongata_contig12672.1984.1 ID=prot_H-elongata_contig12672.1984.1|Name=mRNA_H-elongata_contig12672.1984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKVKSIDK
LEMRFLEALEWDLNVSSSLYAKYYFALRSKSGAIPFRRRYQAILLQVERD
ALLCDGVAKDKLLPSRIFPSTHSENDDPWTSRAQDGNGAMLSRSL*
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mRNA from alignment at H-elongata_contig12672:2046..3520+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12672.1984.1 ID=mRNA_H-elongata_contig12672.1984.1|Name=mRNA_H-elongata_contig12672.1984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1475bp|location=Sequence derived from alignment at H-elongata_contig12672:2046..3520+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCGCGTGCCGCTGCTCGAAAGCACGTGGAGGCCAATTATTTTTTG
CGCCCTTCTCCTAGCTTCAAAGGTGCGAACCCTACTACTAAACACATCAA
GGCCAGGGGAAACGTATAAAGTGATTTTCCGGTTAAAATGTGAAACAAGG
GCTCATATTATCGTCGCGCGTATGAGCCTGACGTTTTGTTACACCAATGA
AAGGTGGTGTTTCCCGATAGTTCCCAAAGAGAGACTCTAACCAACAGCTG
CGCGCGTTGGTTTGTTCCTCCAGATGTGGCAGGACCTCGGCTCTTGGAAC
GGGGAGTTCTCCGCCGCTTACCCCGACTACAAGGTCAAGAGTATCGACAA
GTGAGCCGTTGTCTGGAGTCAGTCATGGGTTGGATAGGGGCTACAATGTG
TTTGGTTACTCTCTCTGTCGTGTTTCCTGCACTGATTTTCATACATATTC
CCATCCCTCAAATCATCGCGCTGGTATCAGGCTGGAGATGCGATTCCTCG
AAGCGCTGGAGTGGGACTTAAATGTCTCAAGTAGCCTCTATGCGAAGTAC
TATTTTGCTCTGAGGTCCAAGTCTGGGGCAATCCCTTTTCGAAGGAGATA
CCAAGCAATATTATTGCAGGTGGAGCGCGACGCTTTGCTATGCGACGGCG
TGGCCAAGGACAAGTTGCTTCCATCTCGGATCTTCCCAAGCACCCACTCA
GAGGTGTAGTGGTAACGAGAGCAGTTCAAGGAGTTGGTACAGTAAAAGGG
GGGATACATACCGAGTGCACCCCGGCGGCTATGCGAATGCACCGTCCGCC
TGAAGCATACCATGTATACGTGTGGCTGCCAGTTACATCCGCCGGCAATT
TACCTCCCCAGAATGTTGGAACATTGACGGGTTTCCCCTTCCACCTTTTC
GCATGACCTCTTTATTTAATCTCGTTTGGGTCCGTCCCATCCTGTTCTGT
TCTGCTGCCTATCGTCCCATTCCACCACGTGCAATTTTGTCGTACGATGG
GGGTGATAGAACGATGATCCCTGGACCAGCAGAGCTCAAGATGGGAATGG
TGCGATGCTCTCAAGAAGTCTCTGAGAGGTTTCCCCAATCAAGACCTATA
CACCACTTCGTCACGCATGCGGTGTGGAAAATGTCCCCGGAGCTCCGCCG
CCTCTTTCTTTCCCCCCTCTCATTACACTTTTACTATAGTTCCGAATTTA
TCTTCATGTTTTCTTTGCCTATTTGTGTGACTATTTTTTATTTTTTAAAA
CTTTAATTCATATTGTTTTATTATCAAAAACAAAAGGAAAACAAAGTAGA
CAGCGCAAACTGACAATAAAACACGTAAGAGGGCGCCACGCCGGTTTGCA
AATAATCCACCCCCCTCTTATGGGGAGCTATCCCTAAAGACGTCCCGTTG
CTTTATTTTCTTTATTGAGGGTGCGACATCCCCTCGCCTCTTGCTTTTTG
TTGGTGAGGAATACAATCATGGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig12672:2046..3520+

>mRNA_H-elongata_contig12672.1984.1 ID=mRNA_H-elongata_contig12672.1984.1|Name=mRNA_H-elongata_contig12672.1984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig12672:2046..3520+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCGCGTGCCGCTGCTCGAAAGCACGTGGAGGCCAATTATTTTTTG
CGCCCTTCTCCTAGCTTCAAAGATGGCGCGCGTGCCGCTGCTCGAAAGCA
CGTGGAGGCCAATTATTTTTTGCGCCCTTCTCCTAGCTTCAAAGATGTGG
CAGGACCTCGGCTCTTGGAACGGGGAGTTCTCCGCCGCTTACCCCGACTA
CAAGGTCAAGAGTATCGACAAATGTGGCAGGACCTCGGCTCTTGGAACGG
GGAGTTCTCCGCCGCTTACCCCGACTACAAGGTCAAGAGTATCGACAAGC
TGGAGATGCGATTCCTCGAAGCGCTGGAGTGGGACTTAAATGTCTCAAGT
AGCCTCTATGCGAAGTACTATTTTGCTCTGAGGTCCAAGTCTGGGGCAAT
CCCTTTTCGAAGGAGATACCAAGCAATATTATTGCAGGTGGAGCGCGACG
CTTTGCTATGCGACGGCGTGGCCAAGGACAAGTTGCTTCCATCTCGGATC
TTCCCAAGCACCCACTCAGAGGCTGGAGATGCGATTCCTCGAAGCGCTGG
AGTGGGACTTAAATGTCTCAAGTAGCCTCTATGCGAAGTACTATTTTGCT
CTGAGGTCCAAGTCTGGGGCAATCCCTTTTCGAAGGAGATACCAAGCAAT
ATTATTGCAGGTGGAGCGCGACGCTTTGCTATGCGACGGCGTGGCCAAGG
ACAAGTTGCTTCCATCTCGGATCTTCCCAAGCACCCACTCAGAGAACGAT
GATCCCTGGACCAGCAGAGCTCAAGATGGGAATGGTGCGATGCTCTCAAG
AAGTCTCTGAAACGATGATCCCTGGACCAGCAGAGCTCAAGATGGGAATG
GTGCGATGCTCTCAAGAAGTCTCTGA
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