mRNA_H-elongata_contig126709.1983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126709.1983.1
Unique NamemRNA_H-elongata_contig126709.1983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A6H5KXS9_9PHAE (HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXS9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.970e-16
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K ADA +ITKAYRKLAKKKHPDKGGDPEEFK LAEAYE +
Sbjct:   70 KILEVGKTADAGSITKAYRKLAKKKHPDKGGDPEEFKALAEAYEVL 115
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BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A7S1WJQ4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WJQ4_ALECA)

HSP 1 Score: 62.0 bits (149), Expect = 5.900e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            KVLEV+K A  + I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:   64 KVLEVDKNASESDIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 109
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BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A7S1RNT1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RNT1_ALECA)

HSP 1 Score: 61.2 bits (147), Expect = 2.950e-10
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV+K A  A + KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:   34 KLLEVDKGASVADVKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 79
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BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A8J1Z2S6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z2S6_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K A  A I KAYRKLA K HPDKGGDPE+FK + +AYE +
Sbjct:   41 KLLEVEKTASGAEIKKAYRKLAIKHHPDKGGDPEQFKSITKAYEVL 86
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A7S1AC79_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AC79_NOCSC)

HSP 1 Score: 61.6 bits (148), Expect = 5.150e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K A  A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:    7 KLLEVEKNASEAEIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 52
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A812V9H3_9DINO (DNAJ1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812V9H3_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV+K A  A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct: 1758 KLLEVDKNASEADIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 1803
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A1Q9EFD0_SYMMI (Putative polyol transporter 2 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EFD0_SYMMI)

HSP 1 Score: 61.6 bits (148), Expect = 7.130e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K A  A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:  883 KLLEVEKNASEADIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 928
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A812N220_9DINO (DNAJ1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812N220_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 7.140e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K A  A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:  807 KLLEVEKNASEADIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 852
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A7S4QLJ7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QLJ7_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K+LEV K A  A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:   23 KLLEVEKSASEADIKKAYRKLAVKHHPDKGGDPEKFKEITRAYEVL 68
[Close]
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Match: A0A813HHZ2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HHZ2_POLGL)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI 138
            K LEV K A+ A I KAYRKLA K HPDKGGDPE+FK +  AYE +
Sbjct:   31 KTLEVEKNANEADIKKAYRKLAVKHHPDKGGDPEKFKEVTRAYEVL 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126709.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS9_9PHAE4.970e-1682.61HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7S1WJQ4_ALECA5.900e-1165.22Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1RNT1_ALECA2.950e-1063.04Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A8J1Z2S6_9DINO3.820e-1065.22Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S1AC79_NOCSC5.150e-1065.22Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A812V9H3_9DINO5.220e-1065.22DNAJ1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A1Q9EFD0_SYMMI7.130e-1065.22Putative polyol transporter 2 n=3 Tax=Symbiodinium... [more]
A0A812N220_9DINO7.140e-1065.22DNAJ1 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A7S4QLJ7_9DINO9.760e-1065.22Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813HHZ2_POLGL9.760e-1065.22Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126709contigH-elongata_contig126709:68..205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.4953043-CDS-H-elongata_contig126709:67..2051622929750.4953043-CDS-H-elongata_contig126709:67..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126709 68..205 -
1691679143.0960722-CDS-H-elongata_contig126709:67..2051691679143.0960722-CDS-H-elongata_contig126709:67..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126709 68..205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126709.1983.1prot_H-elongata_contig126709.1983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126709 68..205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126709.1983.1

>prot_H-elongata_contig126709.1983.1 ID=prot_H-elongata_contig126709.1983.1|Name=mRNA_H-elongata_contig126709.1983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
KVLEVNKRADAATITKAYRKLAKKKHPDKGGDPEEFKMLAEAYEAI
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mRNA from alignment at H-elongata_contig126709:68..205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126709.1983.1 ID=mRNA_H-elongata_contig126709.1983.1|Name=mRNA_H-elongata_contig126709.1983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig126709:68..205- (Himanthalia elongata Himel1 dioecious)
AAGGTGCTGGAGGTGAACAAGAGAGCGGACGCGGCGACAATAACCAAGGC
TTACCGGAAGCTCGCAAAGAAAAAGCACCCGGACAAGGGCGGGGATCCAG
AGGAGTTCAAGATGCTTGCGGAAGCCTACGAGGCGATT
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Coding sequence (CDS) from alignment at H-elongata_contig126709:68..205-

>mRNA_H-elongata_contig126709.1983.1 ID=mRNA_H-elongata_contig126709.1983.1|Name=mRNA_H-elongata_contig126709.1983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig126709:68..205- (Himanthalia elongata Himel1 dioecious)
AAGGTGCTGGAGGTGAACAAGAGAGCGGACGCGGCGACAATAACCAAGGC
TTACCGGAAGCTCGCAAAGAAAAAGCACCCGGACAAGGGCGGGGATCCAG
AGGAGTTCAAGATGCTTGCGGAAGCCTACGAGGCGATTAAGGTGCTGGAG
GTGAACAAGAGAGCGGACGCGGCGACAATAACCAAGGCTTACCGGAAGCT
CGCAAAGAAAAAGCACCCGGACAAGGGCGGGGATCCAGAGGAGTTCAAGA
TGCTTGCGGAAGCCTACGAGGCGATT
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