mRNA_H-elongata_contig126648.1981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126648.1981.1
Unique NamemRNA_H-elongata_contig126648.1981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: D7FR50_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR50_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 7.510e-52
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 1
Query:    1 QTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            +TMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSEC NAAQIYRKVTS+I PSAL+RVQN+RAREFIRVCLSPDP+ RPSAM+LLN P
Sbjct:  136 KTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECVNAAQIYRKVTSQILPSALDRVQNIRAREFIRVCLSPDPDDRPSAMDLLNLP 234          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A835Z3R9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.300e-38
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 QTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            + MSVLGTPEFMAPELY+E Y EKVDIYAFGMCMLEMVTK+RPYSEC NAAQIY++VT+ I P+AL RVQ   A +F+R CL  DP +RPSA  LL +P
Sbjct:  304 KNMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMVTKDRPYSECTNAAQIYKRVTAGILPAALLRVQLRTAVDFVRECLDFDPRRRPSAAALLQHP 402          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A835YJM9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.180e-37
Identity = 71/98 (72.45%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 QTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNY 294
            + MSVLGTPEFMAPELY+E Y EKVDIYAFGMCMLEM+TKERPYSEC NAAQIY++VT+ I PSAL RVQ   A +FIR CL  D   RPSA ELL +
Sbjct:  247 KNMSVLGTPEFMAPELYDEAYNEKVDIYAFGMCMLEMITKERPYSECTNAAQIYKRVTAGILPSALWRVQLRTAVDFIRECLDFDASLRPSAAELLQH 344          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A7S3QX72_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QX72_DUNTE)

HSP 1 Score: 136 bits (343), Expect = 9.120e-37
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    7 MSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            MSV+GTPEFMAPELYEE YTEKVD+Y+FG+C++E+ T E PY+EC N AQI+RKVT  IPP  +E++Q++  REF+ +C+  DPE+RP A +LL +P
Sbjct:  198 MSVIGTPEFMAPELYEEQYTEKVDVYSFGLCIMELATLEYPYNECRNPAQIFRKVTQGIPPMGVEKIQDIELREFVELCIRHDPEQRPEARQLLKHP 294          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A7S2D9L7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D9L7_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 1.700e-36
Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 QTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELL 288
            Q  SVLGTPEFMAPELYEE Y EKVDIYAFGMC+LEMVT E PYSEC NAAQIYRKVT K  P +L+++ + + R FI VCL  DP  RPSA+ELL
Sbjct:  218 QAQSVLGTPEFMAPELYEESYDEKVDIYAFGMCVLEMVTSEYPYSECLNAAQIYRKVTQKHKPGSLQKIVDDQTRHFIEVCLESDPLSRPSALELL 313          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A150H0W0_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0W0_GONPE)

HSP 1 Score: 134 bits (337), Expect = 2.270e-36
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   10 SVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            SVLGTPEFMAPELYEE Y EKVD+YAFGMC+LE+ T E PYSEC NAAQIY+KVT  IPP+++E++ +   R+FI +CL  DP +RP A +LL +P
Sbjct:  123 SVLGTPEFMAPELYEEKYDEKVDVYAFGMCLLELATMEYPYSECKNAAQIYKKVTQGIPPASVEKLASAELRDFIVLCLRHDPHQRPEARQLLKHP 218          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: W7THI3_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THI3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.410e-36
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 MSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLN 291
            +SVLGTPEFMAPELY+E Y EKVD+YAFGMC+LEMVTKE PYSEC NAAQIY+KV  ++ P  L RV N+RAR+FIR CL+ DP +RPS  +LL 
Sbjct:  280 LSVLGTPEFMAPELYDEKYDEKVDVYAFGMCVLEMVTKETPYSECANAAQIYKKVIGQVAPKVLFRVCNLRARDFIRSCLASDPSQRPSVQDLLE 374          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: D8UJD1_VOLCA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UJD1_VOLCA)

HSP 1 Score: 132 bits (331), Expect = 4.000e-36
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   10 SVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            SVLGTPEFMAPELYEE Y EKVD+YAFGMC+LE+ T E PY EC NAAQIY+KVT  IPP++++++ +   R+F+ +CL  DP +RP A +LL +P
Sbjct:  160 SVLGTPEFMAPELYEEKYDEKVDVYAFGMCLLELATMEYPYCECKNAAQIYKKVTQGIPPASVDKLTSTELRDFVMLCLCHDPSRRPEARQLLKHP 255          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: A0A836C1I4_9CHLO (Protein kinase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C1I4_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 4.140e-36
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   10 SVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            SVLGTPEFMAPELYEE Y EKVD+YA+GMC+LE+ T + PYSEC NAAQIY+KVT  IPP+ LER+ +   REFI++C+ PDP +RP   +LL +P
Sbjct:  198 SVLGTPEFMAPELYEEKYDEKVDVYAYGMCLLELATMDYPYSECKNAAQIYKKVTQGIPPACLERIASAEMREFIQLCIQPDPHQRPEGRQLLKHP 293          
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Match: D8UJD0_VOLCA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UJD0_VOLCA)

HSP 1 Score: 135 bits (340), Expect = 5.170e-36
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   10 SVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQIYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP 297
            SVLGTPEFMAPELYEE Y EKVD+Y+FGMC+LE+ T E PY+EC NAAQIY+KVT  I PS L +VQN   REFI +C+  DP +RP A +LL +P
Sbjct:  101 SVLGTPEFMAPELYEEKYDEKVDVYSFGMCLLELATMEYPYAECKNAAQIYKKVTQGIHPSGLAKVQNTELREFIELCIQHDPNQRPEARQLLKHP 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126648.1981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR50_ECTSI7.510e-5289.90Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z3R9_9STRA6.300e-3870.71Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YJM9_9STRA4.180e-3772.45Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3QX72_DUNTE9.120e-3760.82Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7S2D9L7_9EUKA1.700e-3670.83Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A150H0W0_GONPE2.270e-3664.58Protein kinase domain-containing protein n=1 Tax=G... [more]
W7THI3_9STRA2.410e-3669.47Non-specific serine/threonine protein kinase n=2 T... [more]
D8UJD1_VOLCA4.000e-3661.46Protein kinase domain-containing protein (Fragment... [more]
A0A836C1I4_9CHLO4.140e-3664.58Protein kinase domain-containing protein n=1 Tax=E... [more]
D8UJD0_VOLCA5.170e-3665.63Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126648contigH-elongata_contig126648:429..1622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score139.4
Seed ortholog evalue8.7e-31
Seed eggNOG ortholog78898.MVEG_10070T0
EggNOG free text desc.Mortierella verticillata NRRL 6337 WNK protein kinase
EggNOG OGs1GRUG@112252,38GRT@33154,3P1K5@4751,KOG0584@1,KOG0584@2759
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126648.1981.1prot_H-elongata_contig126648.1981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126648 435..1622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.3578036-UTR-H-elongata_contig126648:428..4341622929750.3578036-UTR-H-elongata_contig126648:428..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126648 429..434 +
1691679143.026018-UTR-H-elongata_contig126648:428..4341691679143.026018-UTR-H-elongata_contig126648:428..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126648 429..434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.3708735-CDS-H-elongata_contig126648:434..5841622929750.3708735-CDS-H-elongata_contig126648:434..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126648 435..584 +
1691679143.0379963-CDS-H-elongata_contig126648:434..5841691679143.0379963-CDS-H-elongata_contig126648:434..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126648 435..584 +
1622929750.38391-CDS-H-elongata_contig126648:1481..16221622929750.38391-CDS-H-elongata_contig126648:1481..1622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126648 1482..1622 +
1691679143.0477493-CDS-H-elongata_contig126648:1481..16221691679143.0477493-CDS-H-elongata_contig126648:1481..1622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126648 1482..1622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126648.1981.1

>prot_H-elongata_contig126648.1981.1 ID=prot_H-elongata_contig126648.1981.1|Name=mRNA_H-elongata_contig126648.1981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECFNAAQ
IYRKVTSKIPPSALERVQNVRAREFIRVCLSPDPEKRPSAMELLNYP
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mRNA from alignment at H-elongata_contig126648:429..1622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126648.1981.1 ID=mRNA_H-elongata_contig126648.1981.1|Name=mRNA_H-elongata_contig126648.1981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1194bp|location=Sequence derived from alignment at H-elongata_contig126648:429..1622+ (Himanthalia elongata Himel1 dioecious)
CAGACAATGAGTGTTCTCGGGACACCAGAGTTCATGGCACCTGAGCTGTA CGAAGAGTTCTACACAGAGAAAGTAGATATATACGCTTTCGGGATGTGCA TGCTGGAGATGGTTACAAAGGAGCGCCCATACAGCGAGTGTTTCAACGCG GCGCAGGTGTGTAACATAATCTGCCCTAGCCTCGTGTTTTCGGGCGGGAT CTTTAGCTATTAGCTGAAAGTTGCTTTTTATTAATGCCCGGCAAGCTTAG TCTGGTTGTCCTTCGCTTCATAAATGATATTTTGTTACTAATGTTTTCGA TAGAAAGTGAGAATAATCTAAACCTGTGACTCAAGCGTTCATTTAACTGG CTGTGCTCTTACGAGTATTAGTAGTAGTAGTAGTAGTAGTTCGGCGAATC AAGTCGAGCCAGATCTCTACTCACCTTGATTAGAAGCCCACGGCGTGTCT CTAGGTGGGTGCACATCGCAATAGGTGTTAGTTAATAGGTGTTAATATGT TAATATGTATGGCTCAACTCGCATCAATCAATTTATCAATTTTATTAGAT TCCACTGGTAATAGTAATGTCACATTAAATGAGAACTGGAATGAATCGCG TCGTTTTTTTCTGTTTTTAGATGTAATTAGAATGATAGTAGAATGATAGT AGGCTAAGATGTACCTGGTAAAGAAGAAATAAAGGAATGATAATTAGCAG AAAGAAGGCATTATCTTTTGGATGTCGGAGACACATCACGAATCTTGAGC GGGCCAAATGTAGAAAATAGTTCTTTCTGTGTAACTTCGAACTTCATAAA TTAGCTGCAGTACTTGACAATTTCTTAGCCCAGATAAGAGAACGAAAGCA AGTAGGTTCTTGCCTCCCCTGGCCCCTTAGAATGGACCCTCCTATTACTA GGACAAATAATGGCCGGAGAAACCTAACCTGTCGCATAATGGTGTTATCA CTGGTCAGCCGTACAACTCCCAATATTTTCCCGTTGCGCCGGCCTCTTCA ATTATCTCTATTTTCGCTATTTCGCGTTATTGGGTGCTTTTTTCGTATCG TAGATCTATCGCAAGGTTACTTCAAAGATCCCCCCCTCTGCGCTGGAACG CGTTCAAAACGTCCGAGCCAGAGAGTTCATTCGGGTGTGTCTCAGCCCCG ACCCAGAAAAACGGCCATCGGCAATGGAACTCCTGAACTATCCG
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Coding sequence (CDS) from alignment at H-elongata_contig126648:429..1622+

>mRNA_H-elongata_contig126648.1981.1 ID=mRNA_H-elongata_contig126648.1981.1|Name=mRNA_H-elongata_contig126648.1981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig126648:429..1622+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGTTCTCGGGACACCAGAGTTCATGGCACCTGAGCTGTACGAAGA
GTTCTACACAGAGAAAGTAGATATATACGCTTTCGGGATGTGCATGCTGG
AGATGGTTACAAAGGAGCGCCCATACAGCGAGTGTTTCAACGCGGCGCAG
ATGAGTGTTCTCGGGACACCAGAGTTCATGGCACCTGAGCTGTACGAAGA
GTTCTACACAGAGAAAGTAGATATATACGCTTTCGGGATGTGCATGCTGG
AGATGGTTACAAAGGAGCGCCCATACAGCGAGTGTTTCAACGCGGCGCAG
ATCTATCGCAAGGTTACTTCAAAGATCCCCCCCTCTGCGCTGGAACGCGT
TCAAAACGTCCGAGCCAGAGAGTTCATTCGGGTGTGTCTCAGCCCCGACC
CAGAAAAACGGCCATCGGCAATGGAACTCCTGAACTATCCGATCTATCGC
AAGGTTACTTCAAAGATCCCCCCCTCTGCGCTGGAACGCGTTCAAAACGT
CCGAGCCAGAGAGTTCATTCGGGTGTGTCTCAGCCCCGACCCAGAAAAAC
GGCCATCGGCAATGGAACTCCTGAACTATCCG
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