mRNA_H-elongata_contig126584.1976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126584.1976.1
Unique NamemRNA_H-elongata_contig126584.1976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.690e-44
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQ 309
            Q+SK + D  F +T+QP +AGLF VNDRGVRVMLLTSIPSY KRLED VVNDQV  F+PLCAGFTDAAAPLRELTLKSMV FT QLSEKNMN+KLIKHLARLQ
Sbjct:  296 QISKEMPDEDFRSTIQPTIAGLFAVNDRGVRVMLLTSIPSYGKRLEDAVVNDQV--FEPLCAGFTDAAAPLRELTLKSMVAFTQQLSEKNMNDKLIKHLARLQ 396          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A835ZEQ5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.150e-30
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    4 LSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQ 309
            + +   DA   A VQP+L  LF +NDRGVR MLL+ + + A RL+   VN ++  FDPLCAGFTDAAA LRELTLKSMV FT +LS+KNMN+KLI+HLARLQ
Sbjct:  341 IEREAADAALSARVQPLLVALFTMNDRGVRAMLLSKVDAIAPRLDAATVNARL--FDPLCAGFTDAAAQLRELTLKSMVVFTDKLSDKNMNDKLIRHLARLQ 440          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A7S3XI66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XI66_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 3.090e-23
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQ 309
            +L+  +  A F    QP LA L+G+ DRGVRV LL  +P YA +L++ +VN  +  FD +C GF D +  +RE+TLKSM+ F   LS+KN+N+KL+K+L+RLQ
Sbjct:  123 RLAGRLGAAAFQRRAQPALAALYGLGDRGVRVALLGGLPHYADKLDEALVNGSI--FDQVCMGFQDNSPAMREVTLKSMIHFVDHLSDKNLNDKLVKYLSRLQ 223          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A421EVT5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EVT5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.910e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            Q+  S+    F A V PI+  LF  NDR VRV LL  +  +A   +  +VN  V VFD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQ+
Sbjct:  176 QMGGSLSSEEFKAEVLPIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSAV-VFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQI 278          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A3F2RNB7_9STRA (Protein kinase domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNB7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.640e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            Q+  S+    F A V PI+  LF  NDR VRV LL  +  +A   +  +VN  V VFD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQ+
Sbjct:  371 QIGGSLSSEEFKAEVLPIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSAV-VFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQI 473          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: H3HB87_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB87_PHYRM)

HSP 1 Score: 89.0 bits (219), Expect = 1.720e-18
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            Q+  S+    F A V PI+  LF  NDR VRV LL  +  +A   +  +VN  V +FD +C+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQV
Sbjct:   64 QIGSSLSAEDFKAEVLPIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSSV-IFDNMCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQV 166          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A7S2EPS3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPS3_TRICV)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-18
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   31 FHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQ 309
            F  TV P+ + LF VNDRGVR  LL  +P  A RL+   +N  V  F+P+C+GF+D++APLRELTLKS V     LS  N+ EKL ++L RLQ
Sbjct:    3 FRDTVAPVASALFQVNDRGVRGALLGRVPLLASRLDAATLNASV--FEPMCSGFSDSSAPLRELTLKSTVVLVPHLSPANL-EKLTRYLVRLQ 92          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A2P4X437_9STRA (ATP-dependent DNA helicase 2 subunit n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X437_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.640e-18
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            Q+  S+    F + V PI+  LF  NDR VRV LL  +  +    +  +VN  V VFD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQV
Sbjct: 1281 QIGSSLSAEEFKSDVLPIIIKLFSCNDRAVRVQLLQMMEKFTVHFDAKLVNSSV-VFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDSNLNNRVMKYFAKLQV 1383          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A662WQ41_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ41_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.270e-18
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            Q+  S+    F   V PI+  LF  NDR VRV LL  +  +    +  +VN  V +FD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQV
Sbjct:  440 QIGGSLSAEEFKTQVLPIIVKLFSCNDRAVRVQLLQMMEKFTVHFDAKLVNSSV-IFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDSNLNNRVMKYFAKLQV 542          
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Match: A0A485LVQ8_9STRA (Aste57867_25495 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LVQ8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-17
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   31 FHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVVNDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLARLQV 312
            F   V P L  LFG NDR VRV LL  + S+A   +  +VN  V VFD +C GF D    LRELT+KSM+    +LS+ N+N KL+K+ A+LQV
Sbjct:  373 FKEQVLPTLVKLFGCNDRAVRVQLLQMMDSFAAHFDSKLVNSTV-VFDNICTGFNDTMPLLRELTMKSMLHIADKLSDSNLNNKLMKYFAKLQV 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126584.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G248_ECTSI2.690e-4480.58Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZEQ5_9STRA9.150e-3061.76Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XI66_HETAK3.090e-2347.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A421EVT5_9STRA1.910e-1946.15Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3F2RNB7_9STRA8.640e-1946.15Protein kinase domain-containing protein n=5 Tax=P... [more]
H3HB87_PHYRM1.720e-1845.19Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2EPS3_TRICV2.110e-1851.61Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A2P4X437_9STRA2.640e-1845.19ATP-dependent DNA helicase 2 subunit n=2 Tax=Phyto... [more]
A0A662WQ41_9STRA6.270e-1844.23Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A485LVQ8_9STRA2.260e-1748.94Aste57867_25495 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126584contigH-elongata_contig126584:374..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7.9e-38
Seed eggNOG ortholog2880.D7G248
Preferred nameCEX1
KEGG koko:K08876
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0031503,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
EggNOG free text desc.protein phosphorylation
EggNOG OGsKOG1243@1,KOG1243@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.049603-CDS-H-elongata_contig126584:373..5201622929750.049603-CDS-H-elongata_contig126584:373..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126584 374..520 -
1691679142.9303403-CDS-H-elongata_contig126584:373..5201691679142.9303403-CDS-H-elongata_contig126584:373..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126584 374..520 -
1622929750.0611842-CDS-H-elongata_contig126584:1115..12801622929750.0611842-CDS-H-elongata_contig126584:1115..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126584 1116..1280 -
1691679142.942438-CDS-H-elongata_contig126584:1115..12801691679142.942438-CDS-H-elongata_contig126584:1115..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126584 1116..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126584.1976.1prot_H-elongata_contig126584.1976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126584 374..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126584.1976.1

>prot_H-elongata_contig126584.1976.1 ID=prot_H-elongata_contig126584.1976.1|Name=mRNA_H-elongata_contig126584.1976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
QLSKSVDDAYFHATVQPILAGLFGVNDRGVRVMLLTSIPSYAKRLEDTVV
NDQVLVFDPLCAGFTDAAAPLRELTLKSMVGFTAQLSEKNMNEKLIKHLA
RLQV
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mRNA from alignment at H-elongata_contig126584:374..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126584.1976.1 ID=mRNA_H-elongata_contig126584.1976.1|Name=mRNA_H-elongata_contig126584.1976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig126584:374..1280- (Himanthalia elongata Himel1 dioecious)
CAGCTTTCCAAGAGCGTAGACGACGCGTATTTTCATGCCACAGTGCAGCC TATTCTGGCGGGACTGTTCGGCGTGAACGACCGAGGGGTCCGAGTCATGC TTCTCACCAGCATCCCATCCTACGCCAAGCGACTGGAAGACACGGTGGTG AACGACCAGGTGCTCGTGCATACGTAATTTATTTGGCCAATGAGCTTGTG TGTGGTTATGATAATTTATTTTTCAACAAAAAAAAAAGAAAAATTGTGTG TATTTATTCATTTATTTATTTTTTGCTTTTGTTTTTCGCTGCAGCGCAAG CTCGAGCTCTCGTTTGGTTGGTTGGTTGGCTTCCCCCCCAAAGCATTGGT TTGATTTTTGTCGAATTTCGAGGTGGAGGGAGCGGGGAGGGTTCTTGTTG TATTTTTGTTTATTTGTTACGATAATTAGCACGAGCTCGAGCTCCTGTAG TTCTCAACCATCATGCATGAGATCGTCGCGATTTAGCTTCACATCCTTAC GTAAATATTTCGATTCCGATTCGTGCTAGATGTAGCCTTGCGTCGCGAGA GCATTCGACTGTGCTGCTTAGGATCCAGTTGTGCAGATTCGGACGGGGAT TCGGAGTCAGATTGGAAACTGGCCTCGATTTTTCCGCGTTTTAAGATTTG TCGCCCTCGCGGGGCCTCCTCTTTTTTGCCGCGCGCATTTTGATTTTTCC TTTTGCGGCGATCCTAACGTGGGACTTCAACTTCAACTTGAATGGGTGCC CTGCGGTCAGGTGTTTGACCCCCTGTGCGCGGGGTTCACTGACGCTGCAG CGCCTCTCCGCGAGCTGACCCTCAAGAGCATGGTGGGGTTCACGGCCCAG CTGTCGGAGAAAAACATGAACGAGAAGCTGATCAAGCACCTCGCCAGGCT GCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig126584:374..1280-

>mRNA_H-elongata_contig126584.1976.1 ID=mRNA_H-elongata_contig126584.1976.1|Name=mRNA_H-elongata_contig126584.1976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig126584:374..1280- (Himanthalia elongata Himel1 dioecious)
CAGCTTTCCAAGAGCGTAGACGACGCGTATTTTCATGCCACAGTGCAGCC
TATTCTGGCGGGACTGTTCGGCGTGAACGACCGAGGGGTCCGAGTCATGC
TTCTCACCAGCATCCCATCCTACGCCAAGCGACTGGAAGACACGGTGGTG
AACGACCAGGTGCTCCAGCTTTCCAAGAGCGTAGACGACGCGTATTTTCA
TGCCACAGTGCAGCCTATTCTGGCGGGACTGTTCGGCGTGAACGACCGAG
GGGTCCGAGTCATGCTTCTCACCAGCATCCCATCCTACGCCAAGCGACTG
GAAGACACGGTGGTGAACGACCAGGTGCTCGTGTTTGACCCCCTGTGCGC
GGGGTTCACTGACGCTGCAGCGCCTCTCCGCGAGCTGACCCTCAAGAGCA
TGGTGGGGTTCACGGCCCAGCTGTCGGAGAAAAACATGAACGAGAAGCTG
ATCAAGCACCTCGCCAGGCTGCAGGTAGTGTTTGACCCCCTGTGCGCGGG
GTTCACTGACGCTGCAGCGCCTCTCCGCGAGCTGACCCTCAAGAGCATGG
TGGGGTTCACGGCCCAGCTGTCGGAGAAAAACATGAACGAGAAGCTGATC
AAGCACCTCGCCAGGCTGCAGGTA
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