mRNA_H-elongata_contig126553.1975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126553.1975.1
Unique NamemRNA_H-elongata_contig126553.1975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: D7FJQ3_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ3_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 8.130e-133
Identity = 203/290 (70.00%), Postives = 234/290 (80.69%), Query Frame = 1
Query:    1 GDGLRKRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFRDDGDIGWMSDAESVGSDEVAKLHSEAADMA---EIEDG---TELPPEG--GGSRSSRARARRKVRIKALGL 846
            G+  RKRSRNASDGENRWDRIR+K K LL KMRRDTHF+QVYQQDGWKSSGREKLKPT ELEK + R+RG++AELR+V +RLTEMNPGG RWG +Q+D +GNI+VDE++CTKC +GDSDD DDILLCDYAGCFRAYHQNCL+PP+KPE FP EEEDWFCWQCECLTDC EM+E EF G K  SWKDVFP +ETG   G+  +QDV+ TDSD+ DDESF+ D    W+SDAESVGSDEV+KL+SEA D+A   E +DG   +    EG  GG R SRA ARR  R  ALGL
Sbjct:    4 GECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKARERIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQGEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSDEDDDESFKAD----WLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAEEGSLGGGRRSRALARRSKRYAALGL 289          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A6H5KZT3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT3_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 3.470e-115
Identity = 193/336 (57.44%), Postives = 224/336 (66.67%), Query Frame = 1
Query:   16 KRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFR---------------------------------------------------DDGDIGWMSDAESVGSDEVAKLHSEAADMA---EIEDGT--ELPPEGG---GSRSSRARARRKVRIKALGL 846
            KRSRNASDGENRWDRIR+K K LL KMRRDTHF+QVYQQDGWKSSGREKLKPT ELEK + ++RG++AELR+V +RLTEMNPGG RWG +Q+D +GNI+VDE++CTKC +GDSDD DDILLCDYAGCFRAYHQNCL+PP+KPE FP EEEDWFCWQCECLTDC EM+E EF G K  SWKDVFP +ETG   G+  +QDV+ TDS                                                            ++ +  W+SDAESVGSDEV+KL+SEA D+A   E +DG       EGG   G R SRA ARR  R  ALGL
Sbjct:  144 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKAREKIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQGEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNSEADWLSDAESVGSDEVSKLYSEAGDLACSAETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGL 479          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S2SRQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRQ9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.330e-36
Identity = 72/173 (41.62%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   52 WDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEE-DWFCWQCECLTDCLEMIE-EEFPGTKLESWKDVF 564
            W     +V +LL K+RR  H++Q Y+ +GW+S+ + K+KPT EL+K +  V   K E+R +  +++E NPG  +W  +Q D +  I V+EV C+ C   +S + +DIL+CD  GCFRAYHQ CL P V  E     +E DWFC QC+ L  CL ++  E+  G    SW +VF
Sbjct:  105 WLDYIKRVSSLLGKIRRLMHYLQTYEAEGWRSASQAKIKPTSELQKARDDVYAAKHEIRSILTQISEANPGNKKWSCMQGDAEEGIDVEEVGCSICLSLESTEDNDILMCDGEGCFRAYHQRCLQPAVTSEDVAGGDEVDWFCPQCDSLRHCLYLVSVEDVGGKPPTSWAEVF 277          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: L1JX63_GUITC (PHD-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JX63_GUITC)

HSP 1 Score: 122 bits (307), Expect = 5.950e-29
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 1
Query:   58 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRL----TEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIE 576
            RIR+++K  L   R     +  Y+QDGW  S   KLKPT EL+K    +   K E++++ K++     E+    TR    + + +G +  +++VC+ C  GD+   +DILLCDY+ C RA+HQ C  P V     P ++EDWFC  C C TDC+E + E F GT   +W+ +FP +E
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF-GTHYTTWEKMFPELE 306          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S4NP67_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NP67_GUITH)

HSP 1 Score: 122 bits (307), Expect = 3.030e-28
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 1
Query:   58 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRL----TEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIE 576
            RIR+++K  L   R     +  Y+QDGW  S   KLKPT EL+K    +   K E++++ K++     E+    TR    + + +G +  +++VC+ C  GD+   +DILLCDY+ C RA+HQ C  P V     P ++EDWFC  C C TDC+E + E F GT   +W+ +FP +E
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF-GTHYTTWEKMFPELE 306          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A2P6VNL7_9CHLO (PHD-finger family homeodomain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNL7_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 1.640e-24
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = 1
Query:   46 NRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLES---WKDVFPNIETGTASGSKQK 606
            N +DR+ ++++  L K+R     ++ Y  DGW+ + REK+KP  E+++ K ++   K  +R+   R  +   G         D DG +  D + C+KC   +SD+++DI+LCD   C RAYH  CL PPVK E  P E+E W C  C+   D L++I +EF GT+ E    W+ +   +E GT   S Q+
Sbjct: 1650 NNYDRMLARLRAQLSKLRHAQALVEAYAADGWRGASREKVKPVAEIKRAKDQITKCKEAIRECV-RYCDDAEGDVPIPAELFDEDGELDTDHMFCSKCRGNESDEENDIILCD-GMCNRAYHVKCLVPPVKIEDLP-EDEGWLCPACDRKMDMLDLINDEF-GTEYEDDTPWQQI---LEPGTLPRSPQQ 1832          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S1G4N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4N2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.640e-24
Identity = 66/185 (35.68%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   49 RWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGG-----LQQDNDGN--IKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEED-WFCWQCECLTDCLEMIEEEFPGTKLESWKD-VFPNIE 576
            ++ + R +V   L K+R     +  Y  +GW+ + RE +KP  E+ K +  +R  K  LR +   L   N  G          L+ D  G   + ++++ C++C + D+DD +DILLCD+AGC RAYHQ C+ PP   E  P EE D WFC +C C   CLE +   F GT +   KD +FP ++
Sbjct:   19 KFQQYRKRVAATLSKVRYLKTLMDAYASNGWQDAKRESVKPKSEISKARQSLRAAKRLLRTILTAL--WNEDGADRAAVTTDLLRADAAGRELVLMEDMPCSRCGQVDADDDNDILLCDHAGCNRAYHQLCMDPPFPTECIPQEELDPWFCNRCRCFLMCLEDVNLAF-GTNMNPPKDTLFPELD 200          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A8J5SWA6_ZIZPA (PHD-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SWA6_ZIZPA)

HSP 1 Score: 110 bits (274), Expect = 1.280e-23
Identity = 68/209 (32.54%), Postives = 109/209 (52.15%), Query Frame = 1
Query:   58 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKL---ESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFRDDGDIG 675
            +I  +++  L +M  +   I+ Y  +GW +   EK++P  ELE+ +A +   K ++R   + L ++ P G +  G   D++G I  +++ C  C  GD    +DI+LCD   C RA+HQNCL PP+  E  P+ E+ W C  C+C  D ++ I  +  G+ L   +SW+ VF        +G  Q        SDDS+D  F  D D+G
Sbjct:  107 KISREIRYFLNRMNYEQTLIEAYDNEGWNAKRMEKIRPEKELERARAEILRCKMKIRTAFQNL-DLIPKGKKLDGSLFDSEGRISNEDIFCGTCGTGDVTLNNDIILCD-GSCDRAFHQNCLNPPLLTEHIPAGEQAWLCPACDCKLDLMDKIN-QLQGSNLSISDSWEKVFLEAAALPPAGYVQNDPCDDLPSDDSEDGDF--DPDLG 310          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A482SG36_9ARCH (PHD-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG36_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 7.540e-22
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   16 KRSRN--ASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIE-LEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQ-DNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPN 570
            K++RN   +   N+W    + +K     + R+ HFI+V  Q G  +   E  K   + LE  K  +R  +A        ++E N     W  L Q D +  I V E++C+KC +G+  + +DILLCD AGC RAYHQ CL P +  E    E+ DWFCWQCEC+ DC++ + E      + ++    PN
Sbjct:   42 KKARNEAVAGSTNKWKVYYNLIKRAADLVVREEHFIEVRIQTGGNNIEDENKKSAEKILEAKKGILRTFQA--------ISEENQDHVCWPQLAQGDEEDMIDVGEIMCSKC-QGEEVEGNDILLCDRAGCLRAYHQLCLEPAIDLEKMDMEK-DWFCWQCECIDDCMDYVGERLGKQHMNAYIPYTPN 220          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A836CAE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-18
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 1
Query:    1 GDGLRKRSRN--ASDG-ENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEA 447
            G G RKRSRN  A+ G +N +D+IR+KVKNLL K+RRD + + VY QD  +++  +K+    E  K + R+R  K                      L+ D DG I+++EV CT+C   +S + +DI+LCD  GCFRAYHQ+     V PEA
Sbjct:   46 GKGGRKRSRNTSATSGVDNPYDQIRTKVKNLLTKLRRDNYQLDVYNQDASRTASSKKMAQRQEQAKLEERIRQTK----------------------LEPDEDGQIELEEVACTECGSDESTEGNDIVLCDMEGCFRAYHQD-----VFPEA 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FJQ3_ECTSI8.130e-13370.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZT3_9PHAE3.470e-11557.44PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SRQ9_9STRA2.330e-3641.62Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L1JX63_GUITC5.950e-2937.85PHD-type domain-containing protein n=1 Tax=Guillar... [more]
A0A7S4NP67_GUITH3.030e-2837.85Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A2P6VNL7_9CHLO1.640e-2435.26PHD-finger family homeodomain n=1 Tax=Micractinium... [more]
A0A7S1G4N2_9STRA2.640e-2435.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J5SWA6_ZIZPA1.280e-2332.54PHD-type domain-containing protein n=1 Tax=Zizania... [more]
A0A482SG36_9ARCH7.540e-2234.92PHD-type domain-containing protein n=1 Tax=archaeo... [more]
A0A836CAE7_9STRA5.500e-1840.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126553contigH-elongata_contig126553:541..1521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2.1e-109
Seed eggNOG ortholog2880.D7FJQ3
KEGG koko:K11657,ko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsKOG4299@1,KOG4299@2759
Ec32 ortholog descriptionPHD-type zinc finger and AT hook protein
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, PHD-finger
Ec32 orthologEc-06_010620.1
Exons2
Model size846
Cds size846
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.9910107-CDS-H-elongata_contig126553:540..11981622929749.9910107-CDS-H-elongata_contig126553:540..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126553 541..1198 +
1691679142.8878574-CDS-H-elongata_contig126553:540..11981691679142.8878574-CDS-H-elongata_contig126553:540..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126553 541..1198 +
1622929750.0074315-CDS-H-elongata_contig126553:1333..15211622929750.0074315-CDS-H-elongata_contig126553:1333..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126553 1334..1521 +
1691679142.9198399-CDS-H-elongata_contig126553:1333..15211691679142.9198399-CDS-H-elongata_contig126553:1333..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126553 1334..1521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126553.1975.1prot_H-elongata_contig126553.1975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126553 541..1521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126553.1975.1

>prot_H-elongata_contig126553.1975.1 ID=prot_H-elongata_contig126553.1975.1|Name=mRNA_H-elongata_contig126553.1975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
GDGLRKRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSS
GREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDND
GNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAF
PSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSK
QKQDVVITDSDDSDDESFRDDGDIGWMSDAESVGSDEVAKLHSEAADMAE
IEDGTELPPEGGGSRSSRARARRKVRIKALGL
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mRNA from alignment at H-elongata_contig126553:541..1521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126553.1975.1 ID=mRNA_H-elongata_contig126553.1975.1|Name=mRNA_H-elongata_contig126553.1975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig126553:541..1521+ (Himanthalia elongata Himel1 dioecious)
GGGGACGGGCTCAGGAAGCGTTCCCGTAACGCCAGCGACGGGGAAAACCG TTGGGACCGCATCCGCTCGAAGGTCAAAAACCTGCTGCAGAAGATGAGGC GGGACACTCACTTCATCCAGGTGTATCAACAAGATGGCTGGAAGAGCAGC GGAAGGGAAAAGCTCAAGCCCACGATCGAGTTGGAGAAGGGAAAAGCGCG AGTGCGGGGGGTGAAGGCGGAGCTGCGGCAGGTGGCCAAACGCCTAACCG AGATGAACCCTGGCGGGACGAGATGGGGAGGCTTGCAGCAGGATAATGAT GGTAACATCAAGGTGGACGAAGTGGTGTGCACAAAGTGCAACAAAGGAGA TTCGGACGATCAGGATGACATTTTGCTCTGTGACTACGCAGGGTGTTTCA GGGCCTATCACCAAAACTGTTTGACACCACCCGTCAAGCCAGAGGCCTTT CCCAGCGAGGAAGAAGACTGGTTCTGCTGGCAGTGCGAGTGCCTTACAGA CTGCTTGGAGATGATCGAAGAGGAATTTCCGGGGACCAAGCTCGAGTCCT GGAAAGACGTATTTCCCAACATTGAGACCGGAACGGCCTCGGGGTCAAAG CAGAAGCAGGATGTGGTTATAACCGATTCCGACGATTCTGACGATGAGAG CTTCAGGGGTAGCACCACCGAGAGCGAGGACGAAGATGGTATTCGGAGTG GTCTACACGAAGGGAATGAGAGCCACGGCGGTTCCGGTGTTATTGCTGCT CGGCGTCAACACGAGGGAAGCAGTGACGATAACGAGTCTGGAGACGACGG GGACATTGGGTGGATGAGCGATGCGGAGAGTGTGGGATCTGATGAGGTGG CCAAACTTCACAGCGAGGCGGCGGATATGGCCGAAATAGAGGATGGCACG GAGCTGCCCCCCGAGGGAGGAGGGAGCAGATCTAGCCGTGCGAGGGCGCG ACGGAAGGTTCGAATCAAGGCTCTCGGTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig126553:541..1521+

>mRNA_H-elongata_contig126553.1975.1 ID=mRNA_H-elongata_contig126553.1975.1|Name=mRNA_H-elongata_contig126553.1975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig126553:541..1521+ (Himanthalia elongata Himel1 dioecious)
GGGGACGGGCTCAGGAAGCGTTCCCGTAACGCCAGCGACGGGGAAAACCG
TTGGGACCGCATCCGCTCGAAGGTCAAAAACCTGCTGCAGAAGATGAGGC
GGGACACTCACTTCATCCAGGTGTATCAACAAGATGGCTGGAAGAGCAGC
GGAAGGGAAAAGCTCAAGCCCACGATCGAGTTGGAGAAGGGAAAAGCGCG
AGTGCGGGGGGTGAAGGCGGAGCTGCGGCAGGTGGCCAAACGCCTAACCG
AGATGAACCCTGGCGGGACGAGATGGGGAGGCTTGCAGCAGGATAATGAT
GGTAACATCAAGGTGGACGAAGTGGTGTGCACAAAGTGCAACAAAGGAGA
TTCGGACGATCAGGATGACATTTTGCTCTGTGACTACGCAGGGTGTTTCA
GGGCCTATCACCAAAACTGTTTGACACCACCCGTCAAGCCAGAGGCCTTT
CCCAGCGAGGAAGAAGACTGGTTCTGCTGGCAGTGCGAGTGCCTTACAGA
CTGCTTGGAGATGATCGAAGAGGAATTTCCGGGGACCAAGCTCGAGTCCT
GGAAAGACGTATTTCCCAACATTGAGACCGGAACGGCCTCGGGGTCAAAG
CAGAAGCAGGATGTGGTTATAACCGATTCCGACGATTCTGACGATGAGAG
CTTCAGGGGGGGACGGGCTCAGGAAGCGTTCCCGTAACGCCAGCGACGGG
GAAAACCGTTGGGACCGCATCCGCTCGAAGGTCAAAAACCTGCTGCAGAA
GATGAGGCGGGACACTCACTTCATCCAGGTGTATCAACAAGATGGCTGGA
AGAGCAGCGGAAGGGAAAAGCTCAAGCCCACGATCGAGTTGGAGAAGGGA
AAAGCGCGAGTGCGGGGGGTGAAGGCGGAGCTGCGGCAGGTGGCCAAACG
CCTAACCGAGATGAACCCTGGCGGGACGAGATGGGGAGGCTTGCAGCAGG
ATAATGATGGTAACATCAAGGTGGACGAAGTGGTGTGCACAAAGTGCAAC
AAAGGAGATTCGGACGATCAGGATGACATTTTGCTCTGTGACTACGCAGG
GTGTTTCAGGGCCTATCACCAAAACTGTTTGACACCACCCGTCAAGCCAG
AGGCCTTTCCCAGCGAGGAAGAAGACTGGTTCTGCTGGCAGTGCGAGTGC
CTTACAGACTGCTTGGAGATGATCGAAGAGGAATTTCCGGGGACCAAGCT
CGAGTCCTGGAAAGACGTATTTCCCAACATTGAGACCGGAACGGCCTCGG
GGTCAAAGCAGAAGCAGGATGTGGTTATAACCGATTCCGACGATTCTGAC
GATGAGAGCTTCAGGGACGACGGGGACATTGGGTGGATGAGCGATGCGGA
GAGTGTGGGATCTGATGAGGTGGCCAAACTTCACAGCGAGGCGGCGGATA
TGGCCGAAATAGAGGATGGCACGGAGCTGCCCCCCGAGGGAGGAGGGAGC
AGATCTAGCCGTGCGAGGGCGCGACGGAAGGTTCGAATCAAGGCTCTCGG
TCTTACGACGGGGACATTGGGTGGATGAGCGATGCGGAGAGTGTGGGATC
TGATGAGGTGGCCAAACTTCACAGCGAGGCGGCGGATATGGCCGAAATAG
AGGATGGCACGGAGCTGCCCCCCGAGGGAGGAGGGAGCAGATCTAGCCGT
GCGAGGGCGCGACGGAAGGTTCGAATCAAGGCTCTCGGTCTT
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