mRNA_H-elongata_contig12654.1974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12654.1974.1
Unique NamemRNA_H-elongata_contig12654.1974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 6.650e-91
Identity = 171/336 (50.89%), Postives = 219/336 (65.18%), Query Frame = 1
Query:    1 EHIHSSRQ-ALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADEWNVHHGV-FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDV-----GMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
            E  HS R    + HTA G GLH A V   ASFTI+L  +      D W  +    FIYVWIA++DQI  AEVV+ G  NG L+ATY+S FPG+YL+Y++    S++D+G+PILGSPF LTI+ D+ T  I+SLP C   ++   DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLASL  E T LL LGGSVQRG+FLT+VDM LA G   D  +S IQKCWGY ++ VGN R  YQVL  ALP SW+G L  ++HM+GF   W+ +NPT   L DV     G + +D N LG  E  +  + R     V F++VFP+
Sbjct:   45 EQAHSYRSHERAPHTASGDGLHKATVGRPASFTIQLVGDQLGSLPD-WKPNTSTRFIYVWIANKDQILIAEVVDGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDINSLPVCSTHEDANKDIADTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLVDMVLAAGQKHDIRSSVIQKCWGYADVRVGNFRLTYQVLMGALPPSWEGKLSFVDHMAGFEILWKEDNPTMTDLEDVRIWHLGSSPDDDNGLGKMEGYETRDPR-----VSFMSVFPM 374          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 2.580e-88
Identity = 163/322 (50.62%), Postives = 213/322 (66.15%), Query Frame = 1
Query:    4 HIHSSRQALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADEWNVHHGV-FIYVWIASEDQ--IFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGM-----TLEDANVLGSRELSKLEE*R 924
            H + S +  S HTA G GLH A V   ASFTI+L  +      D W  +    FIYVWIA++DQ  I  AEV + G  NG L+ATY+S FPG+YL+Y++    S++D+G+PILGSPF LTI+ D+ T  ++SLP C   ++   DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLASL  E T LL LGGSVQRG+FLT++DM LA G   D  +S +QKCWGY ++ VGNLR  YQVL +ALP SW+G L  ++HM+GFG  W+ ENPT   L DV M     + +D N LG  +  +  + R
Sbjct:   29 HSYRSLERAS-HTASGDGLHKATVGRSASFTIQLVGDQLGSLPD-WKPNSSTRFIYVWIANKDQDEILIAEVADGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHEDTNKDIPDTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKHDIQSSVVQKCWGYADVRVGNLRLTYQVLMDALPPSWEGKLSFVDHMAGFGIMWEEENPTMTALEDVRMWYLSSSPDDDNGLGKMDAYETRDPR 348          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 3.790e-78
Identity = 157/398 (39.45%), Postives = 211/398 (53.02%), Query Frame = 1
Query:   28 LSKHTAKGVGLHHAIVNEQASFTIRLA----------LENKDPPADEWNVHHGVFIYVWIASEDQIFTAEVVNKGNGILSATYESLFPGEYLIYVEAAIISRRD---QGMPILGSPFKLTISRDSTTAIHSLPACGAI--QEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLSEST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ----------------------------------------------------------------------VLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
            ++ HTA G GL  A     ASFTIRLA           + +  P  ++NV    FIYVW+ASED +F A V N GNG L+A YES FPG+YL++VE   +  +D   +G PI+GSPF LT+S D    + +LP CG    +ED+  S+W+ G+WVSSNIA+  HGV R+GWV Q KT V++ F+ DDLMLLA L E   LLALG S+ RG+FLT++DM LAQG  D+FSTS ++KCWG++++ +GNLR  YQ                                                                      VL +ALP SW+GTL+ML+ + G+G  W   NPT ATL+ V    E +       L ++E  R     V F++ FP+
Sbjct:   67 VAPHTAAGPGLRSASTGVPASFTIRLAGVDASGARPEQQGEKNPDWDYNVDKKRFIYVWVASEDNVFVAGVRNNGNGTLTAAYESSFPGDYLVHVEDVNLKVQDHFGRGRPIIGSPFSLTVSGDPAVDVDALPVCGGEGEEEDLASSYWRTGSWVSSNIAARNHGVLRDGWVFQPKTCVYEAFSYDDLMLLAGLDEPAWLLALGNSILRGIFLTILDMALAQGQKDEFSTSVVKKCWGFIDIRIGNLRISYQDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPM 464          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.070e-72
Identity = 150/337 (44.51%), Postives = 197/337 (58.46%), Query Frame = 1
Query:    4 HIHSSRQALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADE----WNVHHGV-FIYVWIASEDQIFTAEVVNKGN-GILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANV-----LGSRELSKLEE*RHGGKGVEFINVFPV 966
            H +SS ++ + HTA G GLH A V   ASFTI+L  +N           W  +    FIYVWI++EDQI  AE+V  GN G L+ATY+S FPG+YL+YVE    S + +G+PI+GSPF L I+ D  T  ++SLP C + ++   DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+  DLMLLASL  E T L+ +GGSVQRG+FLT+VDM LA G  DD +TS + KCWGY ++ VGNLR  YQ +                       YW   NPT A L DV +                 LSK++  +     V F++ FP+
Sbjct:   63 HGYSSNESAA-HTASGDGLHEATVGISASFTIQLVGDNLGGSGGSSLPNWEPNSSSRFIYVWISNEDQILIAEIVGDGNTGTLTATYKSDFPGDYLVYVEEVQPSEQGEGLPIVGSPFSLKIAGDFPTLDVNSLPVCDSQEDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMVLAAGQKDDIATSTLGKCWGYTDLLVGNLRLTYQDV-----------------------YWYEGNPTMAALEDVSIAFTGGRASRRPPFDGSALSKMDGYQARDSRVSFMSAFPM 375          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 5.200e-66
Identity = 132/258 (51.16%), Postives = 173/258 (67.05%), Query Frame = 1
Query:    1 EHIHSSRQ-ALSKHTAKGVGLHHAIVNEQASFTIRLALENKDP---PADEWN-VHHGVFIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
            E  HS R    + HTA G GLH A V   ASFTI+L  +N          W  +    FIYVWIA+EDQI TAEVV+ G  +G L+ATY+S FPG Y +++E   +S++ +G+PILGSPF LTI+ D+ T  ++SLP C + ++   DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLAS+  E T LL LGGSV+RG+FLT++DM LA G      +S + KCWGY ++ VGNLR  YQ
Sbjct:   48 EQAHSYRSHERAPHTASGDGLHKATVGMPASFTIQLVGDNLGDFHVLLPNWERIRSRRFIYVWIANEDQILTAEVVDGGRKDGTLTATYKSDFPGNYSVHIEEVQLSKKGEGVPILGSPFSLTIAGDAPTLNVNSLPVCSSDEDANTDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASIGGEPTWLLVLGGSVERGVFLTLIDMVLAAGQKQGIRSSVLNKCWGYADVRVGNLRLTYQ 305          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 9.930e-65
Identity = 128/242 (52.89%), Postives = 163/242 (67.36%), Query Frame = 1
Query:   43 AKGVGLHHAIVNEQASFTIRLALENKDPPAD--EWNVHHGV-FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
            A G GLH A V   ASFTI+L  +         +W  +    FIYVWI+S+DQI  AEVV  G  NG L+ATY+S FPG+YL++VE    S R +G+PI+GSPF L I+ D  T  +HSLP CG+  +   DI ++FW+ GTW+S+N+AS AHGV R GWV Q K+ V D F+  DLMLLAS   E T L+ +GGSVQRG+FLT+VDM LA G  DD +TS ++KCWGY ++ VGNLR  YQ
Sbjct:    2 ASGDGLHQATVGISASFTIQLVGDEVGGGGSLPDWEPNSSFRFIYVWISSKDQILIAEVVGDGSNNGTLTATYKSDFPGDYLVHVEEVQPSERGEGLPIVGSPFSLKIAGDFPTLDVHSLPVCGSQDDGSTDIADTFWRPGTWLSANVASAAHGVMRTGWVFQPKSCVFDTFSYQDLMLLASPDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLEKCWGYADLRVGNLRLTYQ 243          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.570e-62
Identity = 118/200 (59.00%), Postives = 147/200 (73.50%), Query Frame = 1
Query:  160 FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
            FIYVWI S+DQI  AEVV  G  NG L+ATY+S FPG+YL++VE    S+R +G+PI+GSPF LTI+ D  T  + SLP CG+  +   DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+  DLMLLASL  E T L+ +GGSVQRG+FLT+VDM LA G  DD +TS +QKCWGY ++ VGNLR  YQ
Sbjct:   29 FIYVWICSKDQILIAEVVGDGSNNGTLTATYQSDFPGDYLVHVEEVQPSKRGEGLPIVGSPFSLTITGDGPTLDVDSLPVCGSQDDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLQKCWGYADLRVGNLRLTYQ 228          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.470e-55
Identity = 107/197 (54.31%), Postives = 143/197 (72.59%), Query Frame = 1
Query:  190 QIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGA---IQEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ-VLTEAL 756
            QI  AEV + G  NG L+ATY+S FPG+YL+Y++    S++D+G+PILGSPF LTI+ D+ T  ++SLP C       ++I ++FW+ GTW+SS++AS AHGV RNGWV Q K+ V D F+ +DLMLLASL  E T LL LGGSVQRG+FLT++DM LA G  +D  +S +QKCWGY ++ VGNLR  YQ  +T+ L
Sbjct:   13 QILIAEVADDGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHDDANKNIADTFWRSGTWLSSSVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIQSSVVQKCWGYADVRVGNLRLTYQEAVTDGL 209          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 5.640e-55
Identity = 109/208 (52.40%), Postives = 141/208 (67.79%), Query Frame = 1
Query:  160 FIYVWIASEDQIFTAEVVNKGNGILSATYESLFPGEYLIYVE-----AAIISRR-----DQGMPILGSPFKLTISRDSTTAIHSLPACGAI--QEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVL 744
            F+YVWIAS D +  A VV+ G+G L+ATYES +PG+YL++V+      +++ R      ++   I+ SPF+LTIS +    +  LP C A   QED  ++FW+ G+W+SS  AS  HGV R+GWV Q KT VHD F+ DDLMLLA+ S E T LL LG SVQRG+FLT+VDM LAQG   DF+TS IQKCWG+  + VGNLR  YQ L
Sbjct:    6 FVYVWIASTDHVLHAAVVDNGDGTLTATYESPYPGDYLVHVQDVCTDMSVVGRGKKRPGERAKAIVDSPFRLTISGEIAVDVDDLPLCDAEHPQEDEEDTFWRTGSWISSKFASAKHGVLRDGWVFQPKTCVHDTFSYDDLMLLATGSKEPTWLLILGTSVQRGVFLTLVDMVLAQGQKSDFATSAIQKCWGFAEVRVGNLRLTYQDL 213          
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.100e-45
Identity = 114/289 (39.45%), Postives = 147/289 (50.87%), Query Frame = 1
Query:  124 PPADEWNVHHGVFIYVWIASED-----QIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTAIHSLPACGAIQEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
            PPA   NV  G        S+D     QI  AEVV+ G  NG L+ATY+S FPG Y +Y++   +SR+D                                 DI ++FW+ GTW+SSN+AS AHGV RNGWV Q  + V D F+ +DLMLLASL  E T LL LGGSVQRG+FLT++DM LA G  +D  +S ++KCWGY ++ VGNLR  YQ                       G YW  ENPT   L  VG+            L K++  +     V F++VFP+
Sbjct:   30 PPAVTVNVDRG--------SQDKPDNEQILIAEVVDDGSKNGTLTATYKSDFPGTYWVYIDEVELSRKDAN------------------------------NDIADTFWRPGTWLSSNVASAAHGVLRNGWVFQPISCVLDTFSYEDLMLLASLDKEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIISSVLRKCWGYADVQVGNLRLTYQ-----------------------GCYWTEENPTMTALKGVGIRFGGRWPNDDNGLGKMDGYQTRDSRVSFMSVFPM 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LHZ4_ECTSI6.650e-9150.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K539_9PHAE2.580e-8850.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ62_ECTSI3.790e-7839.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXD9_ECTSI2.070e-7244.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGZ7_9PHAE5.200e-6651.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXE0_ECTSI9.930e-6552.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8P1_9PHAE2.570e-6259.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW9_9PHAE5.470e-5554.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLN2_ECTSI5.640e-5552.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G348_ECTSI3.100e-4539.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12654contigH-elongata_contig12654:3938..7327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D7FXD9
EggNOG OGs2E5RD@1,2SCI8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1434
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12654.1974.1prot_H-elongata_contig12654.1974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12654 3938..4925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.8650835-CDS-H-elongata_contig12654:3937..41411622929749.8650835-CDS-H-elongata_contig12654:3937..4141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 3938..4141 -
1691679142.8327615-CDS-H-elongata_contig12654:3937..41411691679142.8327615-CDS-H-elongata_contig12654:3937..4141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 3938..4141 -
1622929749.8757148-CDS-H-elongata_contig12654:4386..44911622929749.8757148-CDS-H-elongata_contig12654:4386..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 4387..4491 -
1691679142.8427844-CDS-H-elongata_contig12654:4386..44911691679142.8427844-CDS-H-elongata_contig12654:4386..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 4387..4491 -
1622929749.8859456-CDS-H-elongata_contig12654:4763..49251622929749.8859456-CDS-H-elongata_contig12654:4763..4925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 4764..4925 -
1691679142.8511693-CDS-H-elongata_contig12654:4763..49251691679142.8511693-CDS-H-elongata_contig12654:4763..4925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12654 4764..4925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.8970942-UTR-H-elongata_contig12654:5248..54041622929749.8970942-UTR-H-elongata_contig12654:5248..5404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 5249..5404 -
1691679142.8614857-UTR-H-elongata_contig12654:5248..54041691679142.8614857-UTR-H-elongata_contig12654:5248..5404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 5249..5404 -
1622929749.9227438-UTR-H-elongata_contig12654:5670..57391622929749.9227438-UTR-H-elongata_contig12654:5670..5739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 5671..5739 -
1691679142.8693244-UTR-H-elongata_contig12654:5670..57391691679142.8693244-UTR-H-elongata_contig12654:5670..5739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 5671..5739 -
1622929749.9470823-UTR-H-elongata_contig12654:6589..73271622929749.9470823-UTR-H-elongata_contig12654:6589..7327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 6590..7327 -
1691679142.877909-UTR-H-elongata_contig12654:6589..73271691679142.877909-UTR-H-elongata_contig12654:6589..7327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12654 6590..7327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12654.1974.1

>prot_H-elongata_contig12654.1974.1 ID=prot_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MNQAKLFENQYFHAERRRIYGRSQHYHYVVNNGQNETYSGSRMVFSTITE
MLSSVVFERAVGSKAVLYERATSIPEIGRRNGAARRSFEVCTDCPAKLFP
FHVKPVPQPECETVSSLPANTPVGEVWNKRLCPDWCAATKPVKQTPTESG
MVNVRRC
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mRNA from alignment at H-elongata_contig12654:3938..7327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12654.1974.1 ID=mRNA_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3390bp|location=Sequence derived from alignment at H-elongata_contig12654:3938..7327- (Himanthalia elongata Himel1 dioecious)
GAACACATTCATAGCAGTCGGCAAGCTCTGTCCAAGCACACCGCTAAAGG TGTAGGGCTGCATCACGCCATTGTCAATGAACAGGCGTCATTCACAATTC GATTGGCGCTTGAGAATAAAGACCCTCCCGCCGACGAGTGGAATGTCCAT CATGGGGTATTCATATATGTCTGGATAGCTAGCGAGGACCAAATATTCAC CGCCGAAGTAGTCAACAAGGGGAATGGTATCCTCAGCGCCACTTACGAGA GTTTGTTTCCAGGAGAATACCTCATTTATGTTGAGGCTGCTATAATTTCC AGGAGGGACCAAGGGATGCCTATTTTGGGTAGTCCGTTTAAGTTGACTAT ATCTCGCGACTCAACCACTGCCATTCATAGCTTACCTGCGTGCGGCGCTA TTCAAGAAGATATCACGGAATCTTTCTGGAAAAGAGGAACATGGGTATCT TCGAACATCGCCAGCGTGGCACATGGTGTCAGCAGGAACGGGTGGGTGGT CCAGCTCAAGACATTTGTTCATGATATGTTCAACTAGGATGATCTCATGT TACTAGCTAGCCTAAGCGAGTCAACGTAGCTTCTGGCCTTGGGTGGGTCA GTCCAACGAGGCTTGTTTTTGACCATGGTGGACATGTTTTTGGCACAAGG GTAATGGGATGATTTCAGCACTAGTCCCATTCAAAAGTGTTGGGGCTATG TTAATATGACGGTTGGCAATCTTCGCACCATTTATCAGGTGAGATACACA GGTAGAACGTTATAAGCTACTTCGATGTCAGTACTGTCATGTATCAAGCT TGCGGGAAGGTTTGGAGGTGGTGTTTCGGTCGATTTCAGCGTCATTGTCA TTTTTTTTATTGACATGCCTAGGTAATAATGTTCGCTCTTGCTTGTGCTG CAGGATATGCGCATGTATACCGTGCGGATGGGGCAGGACTCACTTGAATG CCAAGACGAAAAGTTTGTTAGCGGGAGCACGGCTGATTTCGTCCAATCAG GTCGACTGTTCCTGGACCGGACAGTTTTCGGCTTAGGACACCCTTGGCCA AACGTTATCGCTGCTCCCGCCTTCATCATGGCCGATGTTGAAGATCCGAA CTTTGCGATCACGGTGCGGAACACATATATCTTTATATTCAAAATCATTC GAAGCTAGAACGTGCCAGAGTGAGCTCTATGATTGGTCGGTTGGTTGATT TCCCATTAACAGCGCCAAATGGACTATATTTTGTCGGCCCCCATCATGAT GGCTTGTTGTATGATTTCCACTCACTTTTCGAGCTCAAGTTTTGTTCTCT GGGATTGCGTCGAAATGGGTAAGCCCTCGGATTTGGGTGTAAAATGCTAA ATAAATAAGAGGCCGGGTATTCTCGATTTGTTGTAGCACCCTTATATTTT CAAACTTCATATTTTATACCTGGTATGTTATCGTTGCGTGTGAAATGTAT TCATGCAGGCAGTGGCCAATTGGAGCTCGAAGCTAATTAGAGTATGGAAT AGACTGATAGGCTAGAAATCGTGAAGTCATGAATTCGTATGTTCCACTAT CGTTGGCGTTTTTTGGGCGACTCCAATATCTAATCCAGGTCTTGACCGAA GCACTACCAAAGTCATGGAAAGGGACTCTTCTCATGTTGGAGCACATGAG CGGATTCGTGAGTGGATACTACGCAATACGACTGCCTAGTTTCATGATAT AGGCAAACGTTTGGAGTAAAGCGGCTTTGGGTAATTGTAAGCAGGAAAGC CAGGAGCTATGCGATGAGTTTATCCATGCGCCCAGTAAGGTCTCTCGTTC TTCATGATACGTCTCAGGATCTAAAATATAAAATATGGCTTCTTGAGCCT GTATGCTTGTGCATTAAATAAGGACAAGACAACTTGCGTTGACTTCGACC GACCTTGATCGTACGGTAAACAGGGAAACTATTGGCAAGTTGAAAATCCC ACCAGGGCCACACTCAACGACGTAGGCATGACGCTAGAAGACGCTAATGT ACTGGGCAGCAGAGAACTATCAAAGCTGGAGGAGTAACGCCACGGTGGTA AGGGGGTTGAGTTCATAAATGTATTTCCGGTAAGGAACTGCTTCTGGTGA GGTGACGATGCATGCCTGACTTAGACCCCGCATGGATTACCGATCACGGT ACTTCGACCCCAGACAAGCGCATGTTATATAGCACCGTCTCGTTAAGGAT CGTAGATGTTCTAGTGTCCGCCTTGAGATCCCATCGATAACATATACCGC TTAAAGATCTTCCTCCAGGAACCCAATCTGGGTTCCTGCAGCTGGAGCTT AAAGTAGCGTCACTTACCAGCAGAGCGGGTTTACCACGCCTTGAAAGTCT GGAAGCACGTGCAATCTGCCGATCTGATCGCATAACATCTTTATGACTGC AGATGAACCAGGCCAAGCTCTTTGAGAACCAGTACTTCCACGCAGAAAGA AGGCGGATATACGGTAGAAGTCAGCACTACCATTACGTGGTGAATAACGG CCAAAACGAAACCTACAGTGGTTCAAGAATGGTGTTTTCAACCATCACCG AGATGCTGTCAAGCGTAAGTTTGGTCATAATAGACATTCCAGAAGCCAAA CTATAAAATTTTTAATAATAGCAATGGTAGTTGTTGCTCTCTTTGTTTCA TCGTGTGTAATCCTGTGGATTTTCTGCCAAGGAATAAACATGGGCACCAG AAAACCTTGTATCAAGCTTTGGCACATTATATCTCTGCGGCTAGTGTAAG ATCAGCCCAGGACAATCATTTCTCCCGATATTTGCATTCTTTGGCACGCC GTGGCGTACTCTTCCGGGCGCGTTACCATGTCGCAGGTGGTGTTCGAAAG AGCTGTTGGATCAAAAGCTGTGCTTTACGAAAGAGCTACATCCATACCTG AAATTGGGAGGCGAAATGGCGCTGCCCGGCGGTCCTTCGAGGTGGGGCGT GGCGTGGTACCCATGGTATCCATGAAATACCGGCACATCTAGGTATGCGT AGTTCCCGATCATTGAATCACAAGAGCTGGAAATACGTTGATGTGTCAAC ATTGCCACCTTGAAGTGGAGGTGCTTTGGTAAAGAGTGCCAAAGCCAAGT GATCATATCTGGCGATCCCAGACGTTAGGACCGAAGTCATTATAATCCTT GCTCCTGCCATACTTCATGCATACGCTGTCTCGCAGGTGTGTACGGATTG TCCAGCTAAACTTTTTCCGTTTCACGTGAAACCAGTACCACAGCCTGAGT GCGAGACGGTATCGTCCCTACCCGCTAATACACCAGTAGGGGAAGTGTGG AATAAACGACTTTGTCCTGACTGGTGTGCAGCTACCAAGCCGGTAAAGCA GACTCCCACTGAATCTGGCATGGTCAATGTTCGACGTTGC
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Coding sequence (CDS) from alignment at H-elongata_contig12654:3938..7327-

>mRNA_H-elongata_contig12654.1974.1 ID=mRNA_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig12654:3938..7327- (Himanthalia elongata Himel1 dioecious)
ATGAACCAGGCCAAGCTCTTTGAGAACCAGTACTTCCACGCAGAAAGAAG
GCGGATATACGGTAGAAGTCAGCACTACCATTACGTGGTGAATAACGGCC
AAAACGAAACCTACAGTGGTTCAAGAATGGTGTTTTCAACCATCACCGAG
ATGCTGTCAAGCATGAACCAGGCCAAGCTCTTTGAGAACCAGTACTTCCA
CGCAGAAAGAAGGCGGATATACGGTAGAAGTCAGCACTACCATTACGTGG
TGAATAACGGCCAAAACGAAACCTACAGTGGTTCAAGAATGGTGTTTTCA
ACCATCACCGAGATGCTGTCAAGCGTGGTGTTCGAAAGAGCTGTTGGATC
AAAAGCTGTGCTTTACGAAAGAGCTACATCCATACCTGAAATTGGGAGGC
GAAATGGCGCTGCCCGGCGGTCCTTCGAGGTGGTGTTCGAAAGAGCTGTT
GGATCAAAAGCTGTGCTTTACGAAAGAGCTACATCCATACCTGAAATTGG
GAGGCGAAATGGCGCTGCCCGGCGGTCCTTCGAGGTGTGTACGGATTGTC
CAGCTAAACTTTTTCCGTTTCACGTGAAACCAGTACCACAGCCTGAGTGC
GAGACGGTATCGTCCCTACCCGCTAATACACCAGTAGGGGAAGTGTGGAA
TAAACGACTTTGTCCTGACTGGTGTGCAGCTACCAAGCCGGTAAAGCAGA
CTCCCACTGAATCTGGCATGGTCAATGTTCGACGTTGCGTGTGTACGGAT
TGTCCAGCTAAACTTTTTCCGTTTCACGTGAAACCAGTACCACAGCCTGA
GTGCGAGACGGTATCGTCCCTACCCGCTAATACACCAGTAGGGGAAGTGT
GGAATAAACGACTTTGTCCTGACTGGTGTGCAGCTACCAAGCCGGTAAAG
CAGACTCCCACTGAATCTGGCATGGTCAATGTTCGACGTTGC
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