mRNA_H-elongata_contig12654.1974.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI) HSP 1 Score: 299 bits (766), Expect = 6.650e-91 Identity = 171/336 (50.89%), Postives = 219/336 (65.18%), Query Frame = 1
Query: 1 EHIHSSRQ-ALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADEWNVHHGV-FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDV-----GMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
E HS R + HTA G GLH A V ASFTI+L + D W + FIYVWIA++DQI AEVV+ G NG L+ATY+S FPG+YL+Y++ S++D+G+PILGSPF LTI+ D+ T I+SLP C ++ DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLASL E T LL LGGSVQRG+FLT+VDM LA G D +S IQKCWGY ++ VGN R YQVL ALP SW+G L ++HM+GF W+ +NPT L DV G + +D N LG E + + R V F++VFP+
Sbjct: 45 EQAHSYRSHERAPHTASGDGLHKATVGRPASFTIQLVGDQLGSLPD-WKPNTSTRFIYVWIANKDQILIAEVVDGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDINSLPVCSTHEDANKDIADTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLVDMVLAAGQKHDIRSSVIQKCWGYADVRVGNFRLTYQVLMGALPPSWEGKLSFVDHMAGFEILWKEDNPTMTDLEDVRIWHLGSSPDDDNGLGKMEGYETRDPR-----VSFMSVFPM 374
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE) HSP 1 Score: 291 bits (746), Expect = 2.580e-88 Identity = 163/322 (50.62%), Postives = 213/322 (66.15%), Query Frame = 1
Query: 4 HIHSSRQALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADEWNVHHGV-FIYVWIASEDQ--IFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGM-----TLEDANVLGSRELSKLEE*R 924
H + S + S HTA G GLH A V ASFTI+L + D W + FIYVWIA++DQ I AEV + G NG L+ATY+S FPG+YL+Y++ S++D+G+PILGSPF LTI+ D+ T ++SLP C ++ DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLASL E T LL LGGSVQRG+FLT++DM LA G D +S +QKCWGY ++ VGNLR YQVL +ALP SW+G L ++HM+GFG W+ ENPT L DV M + +D N LG + + + R
Sbjct: 29 HSYRSLERAS-HTASGDGLHKATVGRSASFTIQLVGDQLGSLPD-WKPNSSTRFIYVWIANKDQDEILIAEVADGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHEDTNKDIPDTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKHDIQSSVVQKCWGYADVRVGNLRLTYQVLMDALPPSWEGKLSFVDHMAGFGIMWEEENPTMTALEDVRMWYLSSSPDDDNGLGKMDAYETRDPR 348
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI) HSP 1 Score: 268 bits (686), Expect = 3.790e-78 Identity = 157/398 (39.45%), Postives = 211/398 (53.02%), Query Frame = 1
Query: 28 LSKHTAKGVGLHHAIVNEQASFTIRLA----------LENKDPPADEWNVHHGVFIYVWIASEDQIFTAEVVNKGNGILSATYESLFPGEYLIYVEAAIISRRD---QGMPILGSPFKLTISRDSTTAIHSLPACGAI--QEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLSEST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ----------------------------------------------------------------------VLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
++ HTA G GL A ASFTIRLA + + P ++NV FIYVW+ASED +F A V N GNG L+A YES FPG+YL++VE + +D +G PI+GSPF LT+S D + +LP CG +ED+ S+W+ G+WVSSNIA+ HGV R+GWV Q KT V++ F+ DDLMLLA L E LLALG S+ RG+FLT++DM LAQG D+FSTS ++KCWG++++ +GNLR YQ VL +ALP SW+GTL+ML+ + G+G W NPT ATL+ V E + L ++E R V F++ FP+
Sbjct: 67 VAPHTAAGPGLRSASTGVPASFTIRLAGVDASGARPEQQGEKNPDWDYNVDKKRFIYVWVASEDNVFVAGVRNNGNGTLTAAYESSFPGDYLVHVEDVNLKVQDHFGRGRPIIGSPFSLTVSGDPAVDVDALPVCGGEGEEEDLASSYWRTGSWVSSNIAARNHGVLRDGWVFQPKTCVYEAFSYDDLMLLAGLDEPAWLLALGNSILRGIFLTILDMALAQGQKDEFSTSVVKKCWGFIDIRIGNLRISYQDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPM 464
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI) HSP 1 Score: 251 bits (640), Expect = 2.070e-72 Identity = 150/337 (44.51%), Postives = 197/337 (58.46%), Query Frame = 1
Query: 4 HIHSSRQALSKHTAKGVGLHHAIVNEQASFTIRLALENKDPPADE----WNVHHGV-FIYVWIASEDQIFTAEVVNKGN-GILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANV-----LGSRELSKLEE*RHGGKGVEFINVFPV 966
H +SS ++ + HTA G GLH A V ASFTI+L +N W + FIYVWI++EDQI AE+V GN G L+ATY+S FPG+YL+YVE S + +G+PI+GSPF L I+ D T ++SLP C + ++ DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ DLMLLASL E T L+ +GGSVQRG+FLT+VDM LA G DD +TS + KCWGY ++ VGNLR YQ + YW NPT A L DV + LSK++ + V F++ FP+
Sbjct: 63 HGYSSNESAA-HTASGDGLHEATVGISASFTIQLVGDNLGGSGGSSLPNWEPNSSSRFIYVWISNEDQILIAEIVGDGNTGTLTATYKSDFPGDYLVYVEEVQPSEQGEGLPIVGSPFSLKIAGDFPTLDVNSLPVCDSQEDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMVLAAGQKDDIATSTLGKCWGYTDLLVGNLRLTYQDV-----------------------YWYEGNPTMAALEDVSIAFTGGRASRRPPFDGSALSKMDGYQARDSRVSFMSAFPM 375
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE) HSP 1 Score: 236 bits (601), Expect = 5.200e-66 Identity = 132/258 (51.16%), Postives = 173/258 (67.05%), Query Frame = 1
Query: 1 EHIHSSRQ-ALSKHTAKGVGLHHAIVNEQASFTIRLALENKDP---PADEWN-VHHGVFIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
E HS R + HTA G GLH A V ASFTI+L +N W + FIYVWIA+EDQI TAEVV+ G +G L+ATY+S FPG Y +++E +S++ +G+PILGSPF LTI+ D+ T ++SLP C + ++ DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ +DLMLLAS+ E T LL LGGSV+RG+FLT++DM LA G +S + KCWGY ++ VGNLR YQ
Sbjct: 48 EQAHSYRSHERAPHTASGDGLHKATVGMPASFTIQLVGDNLGDFHVLLPNWERIRSRRFIYVWIANEDQILTAEVVDGGRKDGTLTATYKSDFPGNYSVHIEEVQLSKKGEGVPILGSPFSLTIAGDAPTLNVNSLPVCSSDEDANTDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASIGGEPTWLLVLGGSVERGVFLTLIDMVLAAGQKQGIRSSVLNKCWGYADVRVGNLRLTYQ 305
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI) HSP 1 Score: 231 bits (588), Expect = 9.930e-65 Identity = 128/242 (52.89%), Postives = 163/242 (67.36%), Query Frame = 1
Query: 43 AKGVGLHHAIVNEQASFTIRLALENKDPPAD--EWNVHHGV-FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
A G GLH A V ASFTI+L + +W + FIYVWI+S+DQI AEVV G NG L+ATY+S FPG+YL++VE S R +G+PI+GSPF L I+ D T +HSLP CG+ + DI ++FW+ GTW+S+N+AS AHGV R GWV Q K+ V D F+ DLMLLAS E T L+ +GGSVQRG+FLT+VDM LA G DD +TS ++KCWGY ++ VGNLR YQ
Sbjct: 2 ASGDGLHQATVGISASFTIQLVGDEVGGGGSLPDWEPNSSFRFIYVWISSKDQILIAEVVGDGSNNGTLTATYKSDFPGDYLVHVEEVQPSERGEGLPIVGSPFSLKIAGDFPTLDVHSLPVCGSQDDGSTDIADTFWRPGTWLSANVASAAHGVMRTGWVFQPKSCVFDTFSYQDLMLLASPDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLEKCWGYADLRVGNLRLTYQ 243
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.570e-62 Identity = 118/200 (59.00%), Postives = 147/200 (73.50%), Query Frame = 1
Query: 160 FIYVWIASEDQIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGAIQE---DITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ 738
FIYVWI S+DQI AEVV G NG L+ATY+S FPG+YL++VE S+R +G+PI+GSPF LTI+ D T + SLP CG+ + DI ++FW+ GTW+SSN+AS AHGV RNGWV Q K+ V D F+ DLMLLASL E T L+ +GGSVQRG+FLT+VDM LA G DD +TS +QKCWGY ++ VGNLR YQ
Sbjct: 29 FIYVWICSKDQILIAEVVGDGSNNGTLTATYQSDFPGDYLVHVEEVQPSKRGEGLPIVGSPFSLTITGDGPTLDVDSLPVCGSQDDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLQKCWGYADLRVGNLRLTYQ 228
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.470e-55 Identity = 107/197 (54.31%), Postives = 143/197 (72.59%), Query Frame = 1
Query: 190 QIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTA-IHSLPACGA---IQEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQ-VLTEAL 756
QI AEV + G NG L+ATY+S FPG+YL+Y++ S++D+G+PILGSPF LTI+ D+ T ++SLP C ++I ++FW+ GTW+SS++AS AHGV RNGWV Q K+ V D F+ +DLMLLASL E T LL LGGSVQRG+FLT++DM LA G +D +S +QKCWGY ++ VGNLR YQ +T+ L
Sbjct: 13 QILIAEVADDGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHDDANKNIADTFWRSGTWLSSSVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIQSSVVQKCWGYADVRVGNLRLTYQEAVTDGL 209
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI) HSP 1 Score: 202 bits (514), Expect = 5.640e-55 Identity = 109/208 (52.40%), Postives = 141/208 (67.79%), Query Frame = 1
Query: 160 FIYVWIASEDQIFTAEVVNKGNGILSATYESLFPGEYLIYVE-----AAIISRR-----DQGMPILGSPFKLTISRDSTTAIHSLPACGAI--QEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVL 744
F+YVWIAS D + A VV+ G+G L+ATYES +PG+YL++V+ +++ R ++ I+ SPF+LTIS + + LP C A QED ++FW+ G+W+SS AS HGV R+GWV Q KT VHD F+ DDLMLLA+ S E T LL LG SVQRG+FLT+VDM LAQG DF+TS IQKCWG+ + VGNLR YQ L
Sbjct: 6 FVYVWIASTDHVLHAAVVDNGDGTLTATYESPYPGDYLVHVQDVCTDMSVVGRGKKRPGERAKAIVDSPFRLTISGEIAVDVDDLPLCDAEHPQEDEEDTFWRTGSWISSKFASAKHGVLRDGWVFQPKTCVHDTFSYDDLMLLATGSKEPTWLLILGTSVQRGVFLTLVDMVLAQGQKSDFATSAIQKCWGFAEVRVGNLRLTYQDL 213
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI) HSP 1 Score: 175 bits (443), Expect = 3.100e-45 Identity = 114/289 (39.45%), Postives = 147/289 (50.87%), Query Frame = 1
Query: 124 PPADEWNVHHGVFIYVWIASED-----QIFTAEVVNKG--NGILSATYESLFPGEYLIYVEAAIISRRDQGMPILGSPFKLTISRDSTTAIHSLPACGAIQEDITESFWKRGTWVSSNIASVAHGVSRNGWVVQLKTFVHDMFN*DDLMLLASLS-EST*LLALGGSVQRGLFLTMVDMFLAQG*WDDFSTSPIQKCWGYVNMTVGNLRTIYQVLTEALPKSWKGTLLMLEHMSGFGNYWQVENPTRATLNDVGMTLEDANVLGSRELSKLEE*RHGGKGVEFINVFPV 966
PPA NV G S+D QI AEVV+ G NG L+ATY+S FPG Y +Y++ +SR+D DI ++FW+ GTW+SSN+AS AHGV RNGWV Q + V D F+ +DLMLLASL E T LL LGGSVQRG+FLT++DM LA G +D +S ++KCWGY ++ VGNLR YQ G YW ENPT L VG+ L K++ + V F++VFP+
Sbjct: 30 PPAVTVNVDRG--------SQDKPDNEQILIAEVVDDGSKNGTLTATYKSDFPGTYWVYIDEVELSRKDAN------------------------------NDIADTFWRPGTWLSSNVASAAHGVLRNGWVFQPISCVLDTFSYEDLMLLASLDKEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIISSVLRKCWGYADVQVGNLRLTYQ-----------------------GCYWTEENPTMTALKGVGIRFGGRWPNDDNGLGKMDGYQTRDSRVSFMSVFPM 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12654.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12654.1974.1 >prot_H-elongata_contig12654.1974.1 ID=prot_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp MNQAKLFENQYFHAERRRIYGRSQHYHYVVNNGQNETYSGSRMVFSTITEback to top mRNA from alignment at H-elongata_contig12654:3938..7327- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12654.1974.1 ID=mRNA_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3390bp|location=Sequence derived from alignment at H-elongata_contig12654:3938..7327- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12654:3938..7327- >mRNA_H-elongata_contig12654.1974.1 ID=mRNA_H-elongata_contig12654.1974.1|Name=mRNA_H-elongata_contig12654.1974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig12654:3938..7327- (Himanthalia elongata Himel1 dioecious)back to top |