mRNA_H-elongata_contig126505.1970.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.070e-56 Identity = 88/112 (78.57%), Postives = 102/112 (91.07%), Query Frame = 1
Query: 1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
+TQRESM+NMGNIQASGYIARYFGSA+GA+GGAVLYN DTWGWGL+IS LFWIN LVPL LV+PLMPFL E+ KP+E+GVL+RH +ELW LVQK AVW+PMIFVY+YNA M+
Sbjct: 248 KTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISELFWINALVPLVLVMPLMPFLLEDKKPREKGVLKRHSDELWTLVQKTAVWRPMIFVYLYNALML 359
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.130e-31 Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPK---PKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
RT+ ES + G +QASGYIAR FGSA+G+ GA++YN WGWGLSI+ + IN +VPL V P +P+L E K P V R H E+W LVQK+ VW+PM FVYIYNA M+
Sbjct: 231 RTKLESTKHRGTVQASGYIARAFGSAVGSTAGALVYNQANWGWGLSIAQIMLINAVVPLACVSPFIPYLKETVKTSLPTARHVWRTHWQEIWALVQKRVVWQPMTFVYIYNAMMI 345
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK) HSP 1 Score: 100 bits (250), Expect = 1.800e-22 Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
R+Q ES G IQA GYI R+ GS LG+ GAVLYN DTWGWGL+ +F +N VP ++ P M +L + K V + E+W VQK+ +W+PM F++ YN +
Sbjct: 186 RSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQMFALNAFVPFVVLYPAMAYLRDASDLKPIPVPIQ-CREIWGAVQKRNIWQPMAFIFAYNVMQI 296
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.680e-20 Identity = 40/112 (35.71%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
R++ E +G++Q+ GY+ARY G+ +GA G +LYN+ W WGLSIS+++ +NGL + LV+P L + + E L+ + ++W +VQ++ ++ PM F+ +YN ++
Sbjct: 257 RSKLEPEGRVGHMQSVGYVARYVGNVVGATLGTILYNEKEWHWGLSISSIYLLNGLAAVVLVLPFTYHLSDPNQVLEARSLKEQLGDIWKMVQRRTIYVPMSFIAVYNMLLI 368
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.020e-19 Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGV--LRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
R++ E G +QA+ Y R+FGS LGA G ++YN D WGWGLS + + ++ G+ PL V+P ++E+P E G + ++W+ V AVW PM FVYIYN +
Sbjct: 265 RSRYEPSEGRGQMQATCYALRFFGSVLGAGTGTLVYNKDAWGWGLSFAQVCFVLGVFPLLFVVPFAYMVWEKPL-SEAGAKSVPEQCRDIWNTVTLDAVWMPMTFVYIYNVMQI 377
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067BNQ4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNQ4_SAPPC) HSP 1 Score: 61.2 bits (147), Expect = 1.700e-8 Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 7 QRESMTNMGNIQASGYIARY-FGSALGAIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
QRE + G +Q+ Y R+ F + +GAI G L ++ G W + ++ FWI +P + IP++ F ++ K E + N+LW LVQK+AVW+ +IF + +N F
Sbjct: 183 QREPLAVRGRLQSMIYGTRFVFAAIIGAICGFCLNSERFAGDFDWDIGVNGYFWILA-IPSVINIPVVWFFIKDTK-HEAVQFSVYFNQLWTLVQKRAVWQVLIFNFFFNFF 292
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067CA45_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CA45_SAPPC) HSP 1 Score: 60.1 bits (144), Expect = 4.320e-8 Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 7 QRESMTNMGNIQASGYIARY-FGSALGAIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
QRE + G +Q+ Y R+ F + + AI G L + G W + ++ FWI VP + IP++ F ++ K E + N+LW LVQK+AVW+ +IF +++N F
Sbjct: 183 QREPLAVRGRLQSYIYGTRFVFSAIISAICGFCLNSKQFAGQFDWDIGVNGYFWILA-VPAVINIPIVWFCIKDTKT-EAVQFSVYFNQLWTLVQKRAVWQVLIFNFVFNFF 292
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A7S2WKC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC0_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.130e-8 Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 157 INGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMVRD 342
+ L+P+F + PL FLF+ LR+ + E+W+LVQ++ VW PM F+YI++A + +
Sbjct: 6 LQALIPIFTLAPLCTFLFDPGDGFRP--LRQQLEEIWELVQRRTVWYPMSFIYIFSALQITN 65
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067C3B4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3B4_SAPPC) HSP 1 Score: 53.9 bits (128), Expect = 6.150e-6 Identity = 31/112 (27.68%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 7 QRESMTNMGNIQASGYIARYFGSALG-AIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
QRE + G +Q+ Y R S + AI G + + G W ++T++ + +P FL++P F+ + K +++++W+L+QK+A+W+ M+F + YN F
Sbjct: 190 QREPIATRGRMQSLVYTTRTVSSTISTAIAGFCMNSPRFAGDFSWDFGVNTMYMLL-CIPCFLMVPTTYFVIRDTKTAAVP-FGHYLSQIWELLQKRAMWQIMLFNFFYNLF 299
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A1W0A8F0_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8F0_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 8.140e-5 Identity = 33/112 (29.46%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 7 QRESMTNMGNIQASGYIARYFGSALG-AIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
QRE + G +Q+ Y R + AI G + + G W +T++ I VP +IP+ F+ + K +E + + ++W LVQK+A+W+ M+F + YN F
Sbjct: 843 QREPLATRGRMQSLVYTTRTVAGVVSTAICGFCMDSPRFAGNFTWDFGANTMY-IILCVPCVTMIPVAYFVIHDTK-QEAANFKEYAKQVWQLVQKRAMWQIMLFNFFYNLF 952 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126505.1970.1 >prot_H-elongata_contig126505.1970.1 ID=prot_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp MTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLback to top mRNA from alignment at H-elongata_contig126505:483..842- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126505.1970.1 ID=mRNA_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig126505:483..842- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126505:483..842- >mRNA_H-elongata_contig126505.1970.1 ID=mRNA_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig126505:483..842- (Himanthalia elongata Himel1 dioecious)back to top |