mRNA_H-elongata_contig12633.1962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12633.1962.1
Unique NamemRNA_H-elongata_contig12633.1962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12633.1962.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.490e-6
Identity = 59/168 (35.12%), Postives = 70/168 (41.67%), Query Frame = 1 
Query:    7 FDSPRRSS--SSFKFGTP--TRASGAAATAVAAVAGWSASASASRPHS------------------RRGTPIRQGSFGGGEMARQDSATGSDSVFFGTGEGIAGGTPGAAKPASAKTAAGSASAVVVTSARTPSRNISRNTSYDNLLRTPIVGQGLAGPGISSPASRG 444
            FDSP RSS  S+  F TP  TR S +AATA++ VA WSASASA RP S                  R+  P+R  S                         +                            +TPSR +SRNTSY NLLR+P+VG GL GP   SP  RG
Sbjct:  299 FDSPHRSSAVSALPFTTPRRTRESKSAATAISCVAAWSASASA-RPASMGXXXXXXXXXXXXXXXXRQAPPLRLRSXXXXXXXXXXXXXXXXXXXXXXXXXL----------------------------KTPSRTLSRNTSYGNLLRSPLVGHGLRGPAAMSPRPRG 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12633.1962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZI2_9PHAE9.490e-635.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12633contigH-elongata_contig12633:4757..5285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.681792-CDS-H-elongata_contig12633:4756..52841622929748.681792-CDS-H-elongata_contig12633:4756..5284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12633 4757..5284 +
1691679142.4230692-CDS-H-elongata_contig12633:4756..52841691679142.4230692-CDS-H-elongata_contig12633:4756..5284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12633 4757..5284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12633.1962.1prot_H-elongata_contig12633.1962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12633 4757..5284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12633.1962.1

>prot_H-elongata_contig12633.1962.1 ID=prot_H-elongata_contig12633.1962.1|Name=mRNA_H-elongata_contig12633.1962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
SSFDSPRRSSSSFKFGTPTRASGAAATAVAAVAGWSASASASRPHSRRGT
PIRQGSFGGGEMARQDSATGSDSVFFGTGEGIAGGTPGAAKPASAKTAAG
SASAVVVTSARTPSRNISRNTSYDNLLRTPIVGQGLAGPGISSPASRGHG
GSGRLAFSEDSRKNLLAGVGGSGSEP
back to top

mRNA from alignment at H-elongata_contig12633:4757..5285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12633.1962.1 ID=mRNA_H-elongata_contig12633.1962.1|Name=mRNA_H-elongata_contig12633.1962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=529bp|location=Sequence derived from alignment at H-elongata_contig12633:4757..5285+ (Himanthalia elongata Himel1 dioecious)
TCATCCTTCGACTCCCCGCGGCGGTCATCTTCGTCCTTCAAGTTCGGGAC
GCCCACGAGAGCCTCGGGCGCAGCGGCCACTGCCGTCGCCGCTGTTGCGG
GCTGGTCTGCTTCCGCCTCCGCCTCGCGCCCTCACAGCAGACGCGGGACT
CCCATCCGCCAGGGGTCGTTCGGCGGTGGAGAGATGGCGAGGCAAGACTC
GGCGACCGGTTCGGACTCAGTCTTTTTTGGTACAGGCGAGGGGATAGCGG
GGGGCACGCCGGGTGCAGCAAAACCGGCTTCAGCAAAAACAGCAGCAGGT
TCGGCTTCGGCGGTGGTAGTGACATCAGCGCGAACCCCGTCGCGCAATAT
CAGTCGTAACACGTCCTACGACAACCTCCTGCGCACGCCGATTGTGGGGC
AAGGCTTGGCCGGGCCAGGGATAAGCAGCCCCGCTTCGCGAGGGCACGGC
GGATCAGGAAGGTTGGCTTTTTCCGAGGACAGCCGTAAGAATCTTTTGGC
GGGGGTGGGGGGGAGCGGGTCCGAGCCTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12633:4757..5285+

>mRNA_H-elongata_contig12633.1962.1 ID=mRNA_H-elongata_contig12633.1962.1|Name=mRNA_H-elongata_contig12633.1962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig12633:4757..5285+ (Himanthalia elongata Himel1 dioecious)
TCATCCTTCGACTCCCCGCGGCGGTCATCTTCGTCCTTCAAGTTCGGGAC
GCCCACGAGAGCCTCGGGCGCAGCGGCCACTGCCGTCGCCGCTGTTGCGG
GCTGGTCTGCTTCCGCCTCCGCCTCGCGCCCTCACAGCAGACGCGGGACT
CCCATCCGCCAGGGGTCGTTCGGCGGTGGAGAGATGGCGAGGCAAGACTC
GGCGACCGGTTCGGACTCAGTCTTTTTTGGTACAGGCGAGGGGATAGCGG
GGGGCACGCCGGGTGCAGCAAAACCGGCTTCAGCAAAAACAGCAGCAGGT
TCGGCTTCGGCGGTGGTAGTGACATCAGCGCGAACCCCGTCGCGCAATAT
CAGTCGTAACACGTCCTACGACAACCTCCTGCGCACGCCGATTGTGGGGC
AAGGCTTGGCCGGGCCAGGGATAAGCAGCCCCGCTTCGCGAGGGCACGGC
GGATCAGGAAGGTTGGCTTTTTCCGAGGACAGCCGTAAGAATCTTTTGGC
GGGGGTGGGGGGGAGCGGGTCCGAGCCTTCATCCTTCGACTCCCCGCGGC
GGTCATCTTCGTCCTTCAAGTTCGGGACGCCCACGAGAGCCTCGGGCGCA
GCGGCCACTGCCGTCGCCGCTGTTGCGGGCTGGTCTGCTTCCGCCTCCGC
CTCGCGCCCTCACAGCAGACGCGGGACTCCCATCCGCCAGGGGTCGTTCG
GCGGTGGAGAGATGGCGAGGCAAGACTCGGCGACCGGTTCGGACTCAGTC
TTTTTTGGTACAGGCGAGGGGATAGCGGGGGGCACGCCGGGTGCAGCAAA
ACCGGCTTCAGCAAAAACAGCAGCAGGTTCGGCTTCGGCGGTGGTAGTGA
CATCAGCGCGAACCCCGTCGCGCAATATCAGTCGTAACACGTCCTACGAC
AACCTCCTGCGCACGCCGATTGTGGGGCAAGGCTTGGCCGGGCCAGGGAT
AAGCAGCCCCGCTTCGCGAGGGCACGGCGGATCAGGAAGGTTGGCTTTTT
CCGAGGACAGCCGTAAGAATCTTTTGGCGGGGGTGGGGGGGAGCGGGTCC
GAGCCT
back to top