mRNA_H-elongata_contig126267.1957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126267.1957.1
Unique NamemRNA_H-elongata_contig126267.1957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: D7FJK0_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK0_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 2.240e-68
Identity = 129/247 (52.23%), Postives = 171/247 (69.23%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGFSGLKKPPAKVLFPAYSHENLVDILTERVGSTLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLD-AVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKS------------EKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFYKTAT 702
            VLVG+ANS++F++ FSGLKK P ++LF +Y+ E+L  ILTERVGST+   AIQ CA+K AAT GDARRA+N CREAVVLA +ELQ+KLD A S  ER +LG+   G  LVTI+HM+ A+A    ++Y  AIA LS+ A+++L  +A  + +             K   LTQG LQ+KC+  W KL+   GPSQ++F+G +D+LA  GL+ LK KQ T GR R+LVL IE +D+EAAL  Q F+KT T
Sbjct:  710 VLVGLANSLDFNISFSGLKKAPQRLLFQSYTPEDLASILTERVGSTVHPSAIQFCAKKAAATTGDARRALNTCREAVVLADQELQQKLDDATSEAEREQLGEG-GGDNLVTIRHMAKAVAAGNAAKYAGAIAALSLHAKVVLTVAAAAVGAVSDRGGGAGAHGSKGVRLTQGSLQEKCSSAWRKLQTAGGPSQIEFTGIIDLLAASGLLGLKSKQQTGGRTRELVLKIEFADLEAALGDQSFFKTVT 955          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A830BQ65_9LAMI (Cell division control protein 6 homolog n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BQ65_9LAMI)

HSP 1 Score: 89.0 bits (219), Expect = 7.870e-17
Identity = 74/239 (30.96%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGS----TLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFYK 693
            +L+GIAN+++    F      L   PA + F AYS + ++ IL ER+ +         A++LCAR++AA  GD R+A++VCR A+ L   E +E    ++G               V I H++ AL+ +  S   D I  L    QIILCS+    +  K+ T T G+L +KC     K         V+ S    +L DQG+++L   QS   + R++ L ++ +D+  AL    F++
Sbjct:  211 ILIGIANAIDLADRFIPKLQSLNCKPAVITFRAYSKDQIIVILQERLRALPYTVFQPQAVELCARRVAAASGDIRKALSVCRSAIELLEAERREPTSDITG---------------VRIDHVAAALSKTFKSTVVDTIQSLPQHQQIILCSAVKLFRVGKKDT-TIGEL-NKCYVDVCKSTLIPPAGIVELSSMCRVLDDQGILKLG--QSRDDKLRRVSLKVDGADIAFALQGIRFFR 430          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A5C7IYM1_9ROSI (Cdc6_C domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IYM1_9ROSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.230e-15
Identity = 71/234 (30.34%), Postives = 114/234 (48.72%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGS----TLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSS 678
            +L+GIAN+++    F      +   PA V F AYS + ++ IL ER+           A++LCARK+AA  GD R+A+ V R+AV +   EL++    ++ +              V + HM+ AL+ +  S   D I  L    QIILCS+    +  K+ T T G+L      +  K         ++F     +L DQGL++L   QS   + +++ L ++ SDV  AL +
Sbjct:  267 ILIGIANAIDLADRFLPRLQSMNCKPAVVTFRAYSKDQIIRILQERLMGLPYIVFQPQALELCARKVAAASGDMRKALCVSRKAVEMLETELRDSASKINSKS-------------VRVDHMALALSNTFKSPIVDTIQSLPQHQQIILCSAVKFFRGGKKDT-TVGELNKSYTDIC-KTSMIPPVGTLEFLSMCRVLNDQGLLKLG--QSREDKLKRVTLKVDESDVGFALQA 483          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: W9RHB2_9ROSA (Cell division control protein n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RHB2_9ROSA)

HSP 1 Score: 84.7 bits (208), Expect = 3.110e-15
Identity = 76/249 (30.52%), Postives = 123/249 (49.40%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGST----LTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEE------RMRLGDATAGVP-----LVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFY 690
            VL+GIAN+++    F      L   PA + F AYS + ++ IL ER+ +         A++LCARK+AA  GD R+A+ VCR A+ +   EL+E  +  +G          ++    A V      +V I HM+ AL+ +  S   D I  L    QIILCS+    +  K+ T T G+L +K    + K         ++ S    +L DQGL++L   QS   + +++ L ++ +D+  AL    ++
Sbjct:  275 VLIGIANAIDLADRFLPKLQSLNCKPAVITFRAYSKDQILKILQERLTALPYTIFQPQALELCARKVAAASGDMRKALCVCRSAIEMLEAELRESSNNFNGSSIETAFFESQIDPHAAVVKKHEIDIVGIDHMAVALSKTFKSPVVDTIQSLPQHQQIILCSAVKLFRGGKKDT-TIGEL-NKSYVEFCKSALIPPVGILELSNMCRVLNDQGLLKLG--QSREEKFKRVTLKVDEADISFALQVYKYF 519          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A2I0A0X6_9ASPA (Uncharacterized protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A0X6_9ASPA)

HSP 1 Score: 83.2 bits (204), Expect = 6.990e-15
Identity = 68/239 (28.45%), Postives = 111/239 (46.44%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVG----STLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFYK 693
            +L+GIAN+++    F      L   P  + FPAYS + +++IL +R+     S     A+  CARK+AA  GD R+ ++ CR A+ +   E+++      G +            +VT  HM  AL+ +      D I  L    QIILC      +  K+   T  +L     ++   L        ++F     +L+DQGL+ L GK S   R ++L L I++SD+  A     F++
Sbjct:  165 ILIGIANAIDLADRFLPKLESLNCKPTVLSFPAYSRDQILEILRQRLMVLEYSVFQPLALDYCARKVAAASGDMRKVLDTCRTAIDVLEAEIRDNSTKEVGND------------IVTFDHMDIALSKAFKCAKVDIIQSLPQHQQIILCCIVKLFQHSKKNATTIAELNRSYLQICKSLHV-PAIGSIEFIDMCRVLSDQGLLEL-GK-SKEDRLKRLTLKIDISDILFAFKEIRFFQ 388          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: W9RXE1_9ROSA (Cdc6_C domain-containing protein n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RXE1_9ROSA)

HSP 1 Score: 83.6 bits (205), Expect = 7.960e-15
Identity = 78/243 (32.10%), Postives = 123/243 (50.62%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGST----LTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEK---LDAVSGE----ERMRLGDATA----GVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAAL 672
            VL+GIAN+++    F      L   PA + F AYS + ++ IL ER+ +         A++LCARK+AA  GD R+A+ VCR A+ +   EL+E    L+  S E    E+    D        + +V I HM+ AL+ +  S+  D I  L    QIILCS+    +  K+ T T G+L +K    + K         ++ S    +L DQGL++L   QS   + +++ L ++ +D+  AL
Sbjct:  255 VLIGIANAIDLADRFLPRLQSLNCKPAVITFRAYSKDQILKILQERLTALPYTIFQLQALELCARKVAAASGDMRKALCVCRSAIEMLEAELRESSNNLNCSSVETTFFEKHNDPDVAVVKKQEIDIVRIDHMAVALSKTFKSQVVDTIQSLPHHQQIILCSAVKLFRGGKKDT-TIGEL-NKSYVDFCKSALIPPVGILELSSLCRVLNDQGLLKLG--QSREEKFKRVTLKVDEADISFAL 493          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A3P6D9A2_BRACM (Cell division control protein n=9 Tax=Brassica TaxID=3705 RepID=A0A3P6D9A2_BRACM)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-14
Identity = 70/229 (30.57%), Postives = 112/229 (48.91%), Query Frame = 1
Query:   10 GIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGS----TLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAAL 672
            G+AN+++    F      L   P  + FPAYS + ++ IL ER+           A++LCARK+AA  GD R+A++VCR A+ +    L+  +    G E       T   P+V + HM+ AL+ +  S   D I  L    QII+CS+A   +  K+   T G+L      +  K R        +F+    +L DQG+  LK  Q+   + +++ L ++ SD+  AL
Sbjct:  247 GVANAIDLADRFLPKLKSLNCKPMVITFPAYSKDQILRILQERLMVLPYVAFQSNALELCARKVAAASGDMRKALSVCRSAIEI----LEIDIRGSPGPESQ---GPTPDNPVVRMDHMAAALSKTFKSPVVDTIQTLPQHQQIIICSAAKAFRGSKKDA-TIGELNKLYLEIC-KSRVISPAGITEFTNMCTVLNDQGI--LKFGQARGNKLKRVSLRVDESDITFAL 464          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A6J0JDQ2_RAPSA (Cell division control protein n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JDQ2_RAPSA)

HSP 1 Score: 81.3 bits (199), Expect = 4.410e-14
Identity = 68/239 (28.45%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGS----TLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFYK 693
            +L+G+AN+++    F      L   P  V FPAYS + ++ IL ER+           A++LCARK++A  GD R+A++VCR A+ +   E++  +D    E +  + +      +V + HM  ALA +  S   D I  L    QII+CS+A   +  K+   T  +L      +  K          +F+    +L DQG+V+L   Q+ + + +++ L ++ +D+  AL    F++
Sbjct:  256 ILIGVANAIDLADRFLPKLKSLNCKPLVVTFPAYSMQQILRILQERLVELPYVAFQPKALELCARKVSAASGDMRKALSVCRSALEILETEVKGSIDH---EPQTPVTEDQ----VVKMDHMLAALAKTFKSPVVDTIQSLPQHQQIIVCSAAKAFRGSKKDR-TIAELNKLYLEIC-KSSMITPAGITEFTNMCTVLNDQGIVKLS--QARNDKLKRVSLRVDEADITFALKEIRFFR 483          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A2G5BJJ8_COERN (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BJJ8_COERN)

HSP 1 Score: 80.9 bits (198), Expect = 4.440e-14
Identity = 68/231 (29.44%), Postives = 110/231 (47.62%), Query Frame = 1
Query:    4 LVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGST---------LTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPLVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCS--------SAGEIKSEKRAT---LTQGDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKG-KQSTHGR 621
            LVGIAN+++    F          P  + F  Y   ++V IL  R+ S          + K A++LCARK+AAT GD R+A++VCR+A+  A  E + K     G++   +   TA  P VTI H++  L     S     +  L+ Q +++LC+        ++ +  S+K A    +T  DL  +   V  +LR     ++ +F   V M+  QG+V ++  K    GR
Sbjct:  155 LVGIANALDLTDRFLPRLQARNCEPLLLNFNPYQVNDIVVILQSRLDSVASSMATEPLIQKAALELCARKVAATSGDLRKALDVCRQAMEAAEAEHKRKSMTRVGDKENGVASVTAASPKVTIMHIAKVLTNLNGSSTTQKLNSLNFQQKLVLCAYVFLTSAAASTDTPSKKSAASNGITLSDLFAEYCAVCNQLRMLAPVTRSEFFDLVAMMETQGVVSVQSLKAGRRGR 385          
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Match: A0A1S3VIF8_VIGRR (Cell division control protein n=5 Tax=Vigna TaxID=3913 RepID=A0A1S3VIF8_VIGRR)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-13
Identity = 74/252 (29.37%), Postives = 122/252 (48.41%), Query Frame = 1
Query:    1 VLVGIANSMEFDVGF----SGLKKPPAKVLFPAYSHENLVDILTERVGS----TLTKGAIQLCARKLAATHGDARRAINVCREAVVLATRELQEK-------LDAVSGEERMRLGDATAGVP-----LVTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQGDLQDKCARVWGKLRNGEGPSQ--VDFSGTVDMLADQGLVRLKGKQSTHGRARQLVLPIEMSDVEAALSSQPFY 690
            +L+G+AN+++    F    + L   P  V F AYS + ++ IL ER+         + A++LCARK+AA+ GD R A+++C  A+ +   E++E        L+ +S  ++  L  A   +      +V   HM+ AL+ +  S   D I  L    QIILCSS    +  K+ T   G+L        G  R+   P    ++FS    +L+DQGL++L   QS   + R++   +   D+  AL    F+
Sbjct:  224 ILIGVANAIDLADRFLPRLTSLNCKPVVVNFQAYSKDQILMILEERLKELPYIVFQQQALELCARKVAASSGDMRNALSICWSAIEMLEAEIRESACNLNTSLEEISFSQQ-NLPTAPDCMKKREFDIVRTDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSMNHFREAKKDTFL-GELYKSYV---GICRSSLIPPAGILEFSNMCRVLSDQGLIKLG--QSREDKLRRVSPKVNEGDITFALQGIRFF 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126267.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK0_ECTSI2.240e-6852.23AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A830BQ65_9LAMI7.870e-1730.96Cell division control protein 6 homolog n=1 Tax=Ph... [more]
A0A5C7IYM1_9ROSI2.230e-1530.34Cdc6_C domain-containing protein n=1 Tax=Acer yang... [more]
W9RHB2_9ROSA3.110e-1530.52Cell division control protein n=2 Tax=Morus notabi... [more]
A0A2I0A0X6_9ASPA6.990e-1528.45Uncharacterized protein n=1 Tax=Apostasia shenzhen... [more]
W9RXE1_9ROSA7.960e-1532.10Cdc6_C domain-containing protein n=2 Tax=Morus not... [more]
A0A3P6D9A2_BRACM1.310e-1430.57Cell division control protein n=9 Tax=Brassica Tax... [more]
A0A6J0JDQ2_RAPSA4.410e-1428.45Cell division control protein n=1 Tax=Raphanus sat... [more]
A0A2G5BJJ8_COERN4.440e-1429.44P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1S3VIF8_VIGRR1.070e-1329.37Cell division control protein n=5 Tax=Vigna TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126267contigH-elongata_contig126267:485..1237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue4.4e-57
Seed eggNOG ortholog2880.D7FJK0
Preferred nameCDC6
KEGG koko:K02213,ko:K02603,ko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000075,GO:0000076,GO:0000079,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000793,GO:0000794,GO:0000922,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010965,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0030071,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033674,GO:0034641,GO:0034645,GO:0036094,GO:0042127,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045737,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051233,GO:0051246,GO:0051247,GO:0051252,GO:0051302,GO:0051338,GO:0051347,GO:0051726,GO:0051781,GO:0051783,GO:0051983,GO:0051984,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1900087,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1904029,GO:1904031,GO:1905818,GO:2000045,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1474@1,KOG2227@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size711
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126267.1957.1prot_H-elongata_contig126267.1957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126267 509..1237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.3478043-UTR-H-elongata_contig126267:484..5081622929748.3478043-UTR-H-elongata_contig126267:484..508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126267 485..508 +
1691679142.2780282-UTR-H-elongata_contig126267:484..5081691679142.2780282-UTR-H-elongata_contig126267:484..508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126267 485..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.3599205-CDS-H-elongata_contig126267:508..9101622929748.3599205-CDS-H-elongata_contig126267:508..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126267 509..910 +
1691679142.2879932-CDS-H-elongata_contig126267:508..9101691679142.2879932-CDS-H-elongata_contig126267:508..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126267 509..910 +
1622929748.379213-CDS-H-elongata_contig126267:952..12371622929748.379213-CDS-H-elongata_contig126267:952..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126267 953..1237 +
1691679142.2962973-CDS-H-elongata_contig126267:952..12371691679142.2962973-CDS-H-elongata_contig126267:952..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126267 953..1237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126267.1957.1

>prot_H-elongata_contig126267.1957.1 ID=prot_H-elongata_contig126267.1957.1|Name=mRNA_H-elongata_contig126267.1957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MEFDVGFSGLKKPPAKVLFPAYSHENLVDILTERVGSTLTKGAIQLCARK
LAATHGDARRAINVCREAVVLATRELQEKLDAVSGEERMRLGDATAGVPL
VTIQHMSTALAGSQVSRYKDAIADLSVQAQIILCSSAGEIKSEKRATLTQ
GDLQDKCARVWGKLRNGEGPSQVDFSGTVDMLADQGLVRLKGKQSTHGRA
RQLVLPIEMSDVEAALSSQPFYKTATSA*
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mRNA from alignment at H-elongata_contig126267:485..1237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126267.1957.1 ID=mRNA_H-elongata_contig126267.1957.1|Name=mRNA_H-elongata_contig126267.1957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig126267:485..1237+ (Himanthalia elongata Himel1 dioecious)
GTGCTGGTGGGCATTGCTAACTCGATGGAGTTCGATGTTGGCTTTTCGGG CCTGAAAAAGCCGCCTGCCAAGGTGCTGTTCCCAGCTTACAGTCATGAAA ATCTGGTGGACATACTTACAGAACGGGTGGGGAGCACCTTGACGAAGGGG GCGATCCAGCTGTGTGCTCGAAAGTTGGCTGCGACGCACGGCGATGCCAG AAGAGCGATCAATGTTTGTCGCGAGGCAGTCGTTCTCGCCACGCGGGAGC TCCAGGAAAAGCTCGATGCGGTGTCTGGAGAGGAAAGAATGCGTCTTGGT GATGCAACAGCAGGAGTTCCACTGGTGACAATTCAGCACATGTCTACGGC GCTGGCAGGATCGCAAGTGTCTCGGTACAAGGATGCTATCGCCGACTTGT CTGTCCAGGCTCAGATCATCTTGTGTGTGGCGGTTGCCGCAGTCTCGAGC GGGTCCGACAGCCAGGAGAGCAGTGCGGGCGAGATAAAGTCAGAGAAACG CGCAACACTCACACAGGGAGATTTGCAAGACAAGTGCGCGCGTGTTTGGG GCAAGTTGCGAAACGGTGAGGGGCCAAGTCAAGTCGACTTCTCTGGAACG GTCGACATGCTTGCTGACCAAGGCCTGGTGCGGTTGAAGGGGAAGCAATC CACACACGGGCGCGCGCGTCAATTGGTGCTGCCAATCGAGATGTCAGATG TAGAAGCAGCGCTTAGCAGCCAGCCTTTTTATAAGACAGCTACGAGCGCC TGA
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Coding sequence (CDS) from alignment at H-elongata_contig126267:485..1237+

>mRNA_H-elongata_contig126267.1957.1 ID=mRNA_H-elongata_contig126267.1957.1|Name=mRNA_H-elongata_contig126267.1957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig126267:485..1237+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCGATGTTGGCTTTTCGGGCCTGAAAAAGCCGCCTGCCAAGGT
GCTGTTCCCAGCTTACAGTCATGAAAATCTGGTGGACATACTTACAGAAC
GGGTGGGGAGCACCTTGACGAAGGGGGCGATCCAGCTGTGTGCTCGAAAG
TTGGCTGCGACGCACGGCGATGCCAGAAGAGCGATCAATGTTTGTCGCGA
GGCAGTCGTTCTCGCCACGCGGGAGCTCCAGGAAAAGCTCGATGCGGTGT
CTGGAGAGGAAAGAATGCGTCTTGGTGATGCAACAGCAGGAGTTCCACTG
GTGACAATTCAGCACATGTCTACGGCGCTGGCAGGATCGCAAGTGTCTCG
GTACAAGGATGCTATCGCCGACTTGTCTGTCCAGGCTCAGATCATCTTGT
GTATGGAGTTCGATGTTGGCTTTTCGGGCCTGAAAAAGCCGCCTGCCAAG
GTGCTGTTCCCAGCTTACAGTCATGAAAATCTGGTGGACATACTTACAGA
ACGGGTGGGGAGCACCTTGACGAAGGGGGCGATCCAGCTGTGTGCTCGAA
AGTTGGCTGCGACGCACGGCGATGCCAGAAGAGCGATCAATGTTTGTCGC
GAGGCAGTCGTTCTCGCCACGCGGGAGCTCCAGGAAAAGCTCGATGCGGT
GTCTGGAGAGGAAAGAATGCGTCTTGGTGATGCAACAGCAGGAGTTCCAC
TGGTGACAATTCAGCACATGTCTACGGCGCTGGCAGGATCGCAAGTGTCT
CGGTACAAGGATGCTATCGCCGACTTGTCTGTCCAGGCTCAGATCATCTT
GTGTAGCAGTGCGGGCGAGATAAAGTCAGAGAAACGCGCAACACTCACAC
AGGGAGATTTGCAAGACAAGTGCGCGCGTGTTTGGGGCAAGTTGCGAAAC
GGTGAGGGGCCAAGTCAAGTCGACTTCTCTGGAACGGTCGACATGCTTGC
TGACCAAGGCCTGGTGCGGTTGAAGGGGAAGCAATCCACACACGGGCGCG
CGCGTCAATTGGTGCTGCCAATCGAGATGTCAGATGTAGAAGCAGCGCTT
AGCAGCCAGCCTTTTTATAAGACAGCTACGAGCGCCTGAAGCAGTGCGGG
CGAGATAAAGTCAGAGAAACGCGCAACACTCACACAGGGAGATTTGCAAG
ACAAGTGCGCGCGTGTTTGGGGCAAGTTGCGAAACGGTGAGGGGCCAAGT
CAAGTCGACTTCTCTGGAACGGTCGACATGCTTGCTGACCAAGGCCTGGT
GCGGTTGAAGGGGAAGCAATCCACACACGGGCGCGCGCGTCAATTGGTGC
TGCCAATCGAGATGTCAGATGTAGAAGCAGCGCTTAGCAGCCAGCCTTTT
TATAAGACAGCTACGAGCGCCTGA
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