mRNA_H-elongata_contig126190.1955.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 7.410e-7 Identity = 31/121 (25.62%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W DSG T HVSH + G ++ + N +P++G GR+E+++ T +++ + GV Y P++ +LLS AV+ + + R + + + + ++ + + D +Q QA
Sbjct: 205 WTIDSGCTRHVSHESQWFTDI--TTSGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVKH-DFRFSFDRKQCAMQTDQRYKIKALMANNTDLYQFQA 322
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A2P4YPA7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPA7_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.320e-6 Identity = 31/121 (25.62%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W DSG T HVSH + G ++ + N +P++G GR+E+ + +++ + GV Y P++ +LLS AV+ + L + R + + + + ++ + + D +Q QA
Sbjct: 126 WTIDSGCTRHVSHEPQWFTDI--TTSGGSITVGGNNQIPIEGIGRVELQVSDSKGNMQKLTLHGVLYAPQLQFSLLSIPAAVKH-DFRLSFDRKQCTMQTDQRFKIKALMANNTDLYQFQA 243
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A2P4XU07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU07_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 5.450e-6 Identity = 30/121 (24.79%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W D G T HV+H A+ G ++ + N +P++G GR+E+++ T + + + GV Y P++ +LLS AV+ + + R + + + + ++ + + D +Q QA
Sbjct: 153 WTIDPGCTRHVTHESQWFSDI--AASGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQNLILHGVLYAPQLQFSLLSVPAAVKH-DFRFNFDRKQCAMQTDQRFKIKALMAGNTDLYQFQA 270
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL) HSP 1 Score: 53.9 bits (128), Expect = 6.100e-6 Identity = 31/121 (25.62%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W DSG T HV+H ++ +TV + N +P++G G+IE+++ T + + + V Y PE+ +LLS AV+ + + R + + + ++ + + D +Q QA
Sbjct: 229 WTIDSGCTRHVTHESQWFSTISASNGSITVGVK--NQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVKH-DFRFSFDRKQCAVHTEPKFKINAMMATHADLYQFQA 346
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A2P4XHP4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XHP4_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.160e-5 Identity = 30/121 (24.79%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W DSG T HVSH + G ++ + N +P++G GR+E+ + +++ + GV Y P++ +LLS AV+ + + R + + + + ++ + + D +Q QA
Sbjct: 273 WTIDSGYTRHVSHEPQWFTDI--TTSGGSITVGGNNQIPIEGIGRVELQVSDSKGNMQKLTLHGVLYAPQLQFSLLSIPAAVKH-DFRFSFDRKQCAMQTDQRFKIKALMANNTDLYQFQA 390
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Match: A0A6A4DDX6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DDX6_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.840e-5 Identity = 31/121 (25.62%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 1 WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDGVAYVPEISRNLLSTFKAVEQWEKPLIYYRDKAVLGSRETSRLFSTSSPVRDYFQLQA 363
W DSG T HV+H ++ G ++ + N +P++G GR+E+++ K++ + GV Y P++ +LLS AV+ + + R K + + E + + + +Q QA
Sbjct: 138 WTIDSGCTRHVTHEAQWFSNI--SASGGSITVGGKNQIPIEGIGRVELEVIDYKGNMKKLILHGVLYAPQLHFSLLSLSAAVKH-DFRFSFDRKKCAMQTDERFSITALMATNTGLYQFQA 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126190.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126190.1955.1 >prot_H-elongata_contig126190.1955.1 ID=prot_H-elongata_contig126190.1955.1|Name=mRNA_H-elongata_contig126190.1955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp WESDSGATFHVSHTRAGMPAYKKASPGMTVEIADGNTLPVDGFGRIEMDLback to top mRNA from alignment at H-elongata_contig126190:1316..1681- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126190.1955.1 ID=mRNA_H-elongata_contig126190.1955.1|Name=mRNA_H-elongata_contig126190.1955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig126190:1316..1681- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126190:1316..1681- >mRNA_H-elongata_contig126190.1955.1 ID=mRNA_H-elongata_contig126190.1955.1|Name=mRNA_H-elongata_contig126190.1955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig126190:1316..1681- (Himanthalia elongata Himel1 dioecious)back to top |