mRNA_H-elongata_contig126180.1954.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126180.1954.1
Unique NamemRNA_H-elongata_contig126180.1954.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126180.1954.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.080e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   43 PAPTEDLEPVDVSAEATVIVDAPLYDTRLSNDGGCDPAGCSGGLTRDGNRVTADSRWSCAPELGSSGSTCSITYSL 270
            P+P +     ++     V   A L+D  L  D GCDP+GC+ GLTRDG+  T+ SRWSCAP+LG  G +C+I+Y L
Sbjct:  359 PSPEQLFAAKEIDEIGAVTTTATLFDPSLLADNGCDPSGCTAGLTRDGDYATS-SRWSCAPKLGGDGDSCTISYDL 433
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BLAST of mRNA_H-elongata_contig126180.1954.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.410e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   85 EATVIVDAPLYDTRLSNDGGCDPAGCSGGLTRDGNRVTADSRWSCAPELGSSGSTCSITYSL 270
            + TV   A L+D  L+ D GCDPAGC+  LTRDG+   A SRWSCA  LG  G+ CSI+Y L
Sbjct:  248 DTTVTTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDA-SRWSCATNLGGEGAVCSISYDL 308
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BLAST of mRNA_H-elongata_contig126180.1954.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 8.760e-11
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   58 DLEPVDVSAEATVIVDAPLYDTRLSNDGGCDPAGCSGGLTRDGNRVTADSRWSCAPELGSSGSTCSITYSL 270
            D   V+  +   V   + L+D RL +  GCDPAGC+  LTRDG+ V+ +SRWSCAP LG    TCSI+Y L
Sbjct:  180 DTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGD-VSDESRWSCAPSLGG---TCSISYDL 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126180.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KL74_9PHAE2.080e-1246.05F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FZZ4_ECTSI3.410e-1154.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFA6_9PHAE8.760e-1149.30F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126180contigH-elongata_contig126180:96..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7FL48
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size280
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126180.1954.1prot_H-elongata_contig126180.1954.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126180 96..992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.9627798-CDS-H-elongata_contig126180:95..1941622929747.9627798-CDS-H-elongata_contig126180:95..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 96..194 -
1691679142.131545-CDS-H-elongata_contig126180:95..1941691679142.131545-CDS-H-elongata_contig126180:95..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 96..194 -
1622929747.9792297-CDS-H-elongata_contig126180:601..6961622929747.9792297-CDS-H-elongata_contig126180:601..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 602..696 -
1691679142.1405053-CDS-H-elongata_contig126180:601..6961691679142.1405053-CDS-H-elongata_contig126180:601..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 602..696 -
1622929747.9992232-CDS-H-elongata_contig126180:907..9921622929747.9992232-CDS-H-elongata_contig126180:907..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 908..992 -
1691679142.1477244-CDS-H-elongata_contig126180:907..9921691679142.1477244-CDS-H-elongata_contig126180:907..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126180 908..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126180.1954.1

>prot_H-elongata_contig126180.1954.1 ID=prot_H-elongata_contig126180.1954.1|Name=mRNA_H-elongata_contig126180.1954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MIVTSGSTLPPSPTPAPTEDLEPVDVSAEATVIVDAPLYDTRLSNDGGCD
PAGCSGGLTRDGNRVTADSRWSCAPELGSSGSTCSITYSLSSS
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mRNA from alignment at H-elongata_contig126180:96..992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126180.1954.1 ID=mRNA_H-elongata_contig126180.1954.1|Name=mRNA_H-elongata_contig126180.1954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig126180:96..992- (Himanthalia elongata Himel1 dioecious)
ATGATCGTGACTAGTGGATCGACATTGCCTCCCTCCCCAACCCCAGCTCC
CACGGAAGACCTGGAGCCTGTGGACGTCTCTGCCGGTACCCACACTAATA
GGCTCTAGCCTTAGATTATCTCTTATACAATACCCGTTTGATCGTTGGAA
CCACAAGGTGCACTCTTTTCAACCCTTTAATTATCCAGTCCATTGACAAT
AATGAGCACACCGACTTGTAAGATTTTCATGCTGACAACTTTAACTGCTC
GTTATACGTGCTGTCGCTGGTGCGGTCACTATGCACCCTGGGATAGAGGC
AACAGTCATCGTCGACGCGCCTCTCTACGACACGAGACTCAGCAACGACG
GAGGGTGCGATCCCGCCGGCTGCTCGGGTGGCTTGACAAGGGTAAGCGAT
GGCGATAAGTCTTGCACCCTAAGTTAATTTCCTACATGTGATATTAATAG
TTACTATTTTGCAGAGACGAAAAACATTAAGCTATACTCTTTATTGTTAT
AAGTGCATGCAGATTAGCCTAAACAGTACCGCTTCCGTGATCATGGTACT
TTTACCGTGCCTGCGTATGCCACACAGGTGGCGTTGAGAAAATCCTTGGT
TGACACGGTACACGTAGCTGAATAGCTTTTTGCCTGTTGTAAATACGCCC
TTAACCGAAAGAGCACGGTAAAAAGGGATAACTATGTTGTACACACAAGG
ATAACTATGTTGTACACAAAAGCAATAAATATAGTAGTATGTACTACTTC
GAAAAGTGAGCATCATCCCACGGATGAAGGTCTTGTTCGTGGTCACAGGA
TGGAAATAGAGTGACAGCAGACTCTCGCTGGTCTTGCGCACCTGAGCTTG
GCAGCTCTGGTTCGACGTGCTCCATCACCTACAGCCTCTCGTCTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig126180:96..992-

>mRNA_H-elongata_contig126180.1954.1 ID=mRNA_H-elongata_contig126180.1954.1|Name=mRNA_H-elongata_contig126180.1954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig126180:96..992- (Himanthalia elongata Himel1 dioecious)
ATGATCGTGACTAGTGGATCGACATTGCCTCCCTCCCCAACCCCAGCTCC
CACGGAAGACCTGGAGCCTGTGGACGTCTCTGCCGATGATCGTGACTAGT
GGATCGACATTGCCTCCCTCCCCAACCCCAGCTCCCACGGAAGACCTGGA
GCCTGTGGACGTCTCTGCCGAGGCAACAGTCATCGTCGACGCGCCTCTCT
ACGACACGAGACTCAGCAACGACGGAGGGTGCGATCCCGCCGGCTGCTCG
GGTGGCTTGACAAGGAGGCAACAGTCATCGTCGACGCGCCTCTCTACGAC
ACGAGACTCAGCAACGACGGAGGGTGCGATCCCGCCGGCTGCTCGGGTGG
CTTGACAAGGGATGGAAATAGAGTGACAGCAGACTCTCGCTGGTCTTGCG
CACCTGAGCTTGGCAGCTCTGGTTCGACGTGCTCCATCACCTACAGCCTC
TCGTCTTCGGATGGAAATAGAGTGACAGCAGACTCTCGCTGGTCTTGCGC
ACCTGAGCTTGGCAGCTCTGGTTCGACGTGCTCCATCACCTACAGCCTCT
CGTCTTCG
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