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Homology
BLAST of mRNA_H-elongata_contig12614.1949.1 vs. uniprot
Match: A0A6H5KZM3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZM3_9PHAE) HSP 1 Score: 308 bits (788), Expect = 1.060e-93 Identity = 227/499 (45.49%), Postives = 293/499 (58.72%), Query Frame = 1
Query: 1 RREESAARAQRRRDGNRXXXXXXDRRRSAIAEATRAKLEGPSRAEMKA--QARELERRQQFFLFVVAVVGATVRWRNDWKERKLLMAKISETIAAGKETKDSATDKFEASAVCVQRFFRHRKG--GTLSGDHSNKGLRLHPGVNHVRCLKRWIQKLGKRWKCRRRGRAVIIHEFLREAKLTQNIKAIYRFRKRVIRCQVYAKGFLNVTRARLELLDLYFHRCEERLRGRLVERVRQQVKDEAAVDLEIHRQMHHHPV----------VKVDHRRWGEKTAARSGTVTGRSNDDV-KLMDALAKMRLKSALDKLETRFAHPEVKSRLLDGLLTKARVRVEHQVNIRLTNKQRKG--RDRSGDVSRSEKCRRQRREICDGIMLAEAVFTVDDARDLLSKRRRSVKVPGVGRWGDDSSRVT----ATVNIAGNFTGAISSSAGVETTGSGDGKERRSSDKXXXXXXXXAATLTRVKPVLLLRAVTESIMCQLVMAAWEQSST 1434
RREE+ RAQR+R+ N XXXXXX+RRR A AEATR K EGPS AE++A +A LE+RQ++FLF V + + +RWRNDWKERK MAK +E + E K+S D FEAS VQRF R R+G G G + G R N +RCLK WI + WK RRR VII++FL++A+L+QNIKAIYRFR++V+RCQVY KG VTR RL LL L+F +CE RLRGRL ERVRQQV++EAA DLE+HRQ+ TG +D V +LM+ +A +RLKSA ++LE R A P+VK RLL+GLL K VR HQ ++L++ R G GD + R RR G+ L EA+FTVDDAR+LL++ +T A+ N +G GA S+ V G+G S TRV P+LLL++V E++MCQLV+ AWEQSS+
Sbjct: 221 RREEATTRAQRKREANXXXXXXXERRRLATAEATRIKHEGPSLAEVRALEEAALLEKRQRYFLFAVVAIHSAIRWRNDWKERKYKMAKFAEALVGLIEQKESQ-DVFEASVARVQRFVRRRQGAPGVAGGAAATAGDRSGRR-NFIRCLKAWIPRAHGTWKRRRREGGVIIYDFLKDARLSQNIKAIYRFRRKVMRCQVYVKGVSVVTRDRLLLLGLFFSQCEGRLRGRLAERVRQQVQEEAAADLEVHRQLMRPSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGEDDGVSELMETVAALRLKSAQEELEMRSARPDVKRRLLEGLLGK--VRAAHQSRMQLSSGGRGGDXXXXXGDARIGKGPGRNRR----GVFLPEALFTVDDARELLTRSPXXXXXXXXXXXXXXXXGLTNGNQASPNGSGELPGAPYSTVAVSRPGTGGXXXXXVSKSDFRPN-------TRVPPMLLLKSVPEAVMCQLVLTAWEQSSS 704
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_002360.1 |
| Exons | 6 |
| Model size | 1434 |
| Cds size | 1434 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929747.2893453-CDS-H-elongata_contig12614:426..564 | 1622929747.2893453-CDS-H-elongata_contig12614:426..564 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 427..564 + |
| 1691679141.9023428-CDS-H-elongata_contig12614:426..564 | 1691679141.9023428-CDS-H-elongata_contig12614:426..564 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 427..564 + |
| 1622929747.3079553-CDS-H-elongata_contig12614:1071..1227 | 1622929747.3079553-CDS-H-elongata_contig12614:1071..1227 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 1072..1227 + |
| 1691679141.9204175-CDS-H-elongata_contig12614:1071..1227 | 1691679141.9204175-CDS-H-elongata_contig12614:1071..1227 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 1072..1227 + |
| 1622929747.324157-CDS-H-elongata_contig12614:1527..1808 | 1622929747.324157-CDS-H-elongata_contig12614:1527..1808 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 1528..1808 + |
| 1691679141.9328709-CDS-H-elongata_contig12614:1527..1808 | 1691679141.9328709-CDS-H-elongata_contig12614:1527..1808 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 1528..1808 + |
| 1622929747.3389144-CDS-H-elongata_contig12614:2154..2539 | 1622929747.3389144-CDS-H-elongata_contig12614:2154..2539 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 2155..2539 + |
| 1691679141.9420252-CDS-H-elongata_contig12614:2154..2539 | 1691679141.9420252-CDS-H-elongata_contig12614:2154..2539 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 2155..2539 + |
| 1622929747.3549273-CDS-H-elongata_contig12614:2854..3031 | 1622929747.3549273-CDS-H-elongata_contig12614:2854..3031 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 2855..3031 + |
| 1691679141.950323-CDS-H-elongata_contig12614:2854..3031 | 1691679141.950323-CDS-H-elongata_contig12614:2854..3031 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 2855..3031 + |
| 1622929747.3694196-CDS-H-elongata_contig12614:3621..3918 | 1622929747.3694196-CDS-H-elongata_contig12614:3621..3918 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 3622..3918 + |
| 1691679141.963-CDS-H-elongata_contig12614:3621..3918 | 1691679141.963-CDS-H-elongata_contig12614:3621..3918 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12614 3622..3918 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12614.1949.1 >prot_H-elongata_contig12614.1949.1 ID=prot_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp
RREESAARAQRRRDGNRERRRRMDRRRSAIAEATRAKLEGPSRAEMKAQA RELERRQQFFLFVVAVVGATVRWRNDWKERKLLMAKISETIAAGKETKDS ATDKFEASAVCVQRFFRHRKGGTLSGDHSNKGLRLHPGVNHVRCLKRWIQ KLGKRWKCRRRGRAVIIHEFLREAKLTQNIKAIYRFRKRVIRCQVYAKGF LNVTRARLELLDLYFHRCEERLRGRLVERVRQQVKDEAAVDLEIHRQMHH HPVVKVDHRRWGEKTAARSGTVTGRSNDDVKLMDALAKMRLKSALDKLET RFAHPEVKSRLLDGLLTKARVRVEHQVNIRLTNKQRKGRDRSGDVSRSEK CRRQRREICDGIMLAEAVFTVDDARDLLSKRRRSVKVPGVGRWGDDSSRV TATVNIAGNFTGAISSSAGVETTGSGDGKERRSSDKAAAAAAATAATLTR VKPVLLLRAVTESIMCQLVMAAWEQSST back to topmRNA from alignment at H-elongata_contig12614:427..3918+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig12614.1949.1 ID=mRNA_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3492bp|location=Sequence derived from alignment at H-elongata_contig12614:427..3918+ (Himanthalia elongata Himel1 dioecious) AGGCGAGAGGAGTCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAG
AGAGAGGCGACGACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGA
CACGTGCCAAGCTTGAGGGACCCAGCCGGGCGGAGATGGTGACCAATAGA
ATTATGAGGAGTCGTGCTGTGCCAACGACACGATCCACAGTAGTAGCGTA
CAGAAGTTCATAATCGGCTTCCCTATCCTAGTATGGCTTATTGTGTTATT
TTCGCTTGTGATGTGAATTCCCGATGTTGATACGGCAAGACACGACGAAC
AGTGGACGCCTTAGTAAGGCGTTTGTTCCTTGTGTCATATACGTGAAAGC
TCAGAAGAGGTCGAGTGGGGGCATTCATTACCAGAGCTGAAACGGCAGCA
GCAGTGTTTTCCTCTAGACCACTGCTCTTTCCTTTCTTACTTGTGTGCGA
TTACGGAGGGTGTTGTACTTTCTTGGGGTCCTTTGCTTGCTCTATTGTCC
CTTTCAAAACGTTCCTACGAATCCTCGAATATGACGGTCTCCATTCCATG
GCGCCTGAAGTTCGCTTTCAGGATTAGCATTCCTTATCTCTCCATTCATT
TCTACGTATATACCCCATTGTGTCCATCGATCACGGTTATCTCAGAAAGC
TCAGGCCCGAGAGCTCGAACGACGTCAACAATTTTTCCTGTTTGTCGTTG
CCGTTGTGGGTGCAACTGTGAGATGGCGCAACGATTGGAAGGAGCGCAAG
TTGTTGATGGCTAAGATCTCTGAAACTATCGCTGCGGGCAAGGAAACCAA
GGTTTGAGATTGGCGGTAAAATTGGCGAGTGTAACTCAGGCAATTCACGG
GAGAAAATCATAGTATACAAATGATGCACAGGTGTTGCAGCAACAAGGGT
AAAAAAATGTAACACTAGGTGTCGATCGCAGCGACGAGGTTGTGCGCCAA
GGAACGGATAGACCCGAAGGGGCAGCACTGCGAGGTGCGACGTATCAGAT
TATAAAACATCAAACCATTTACGCCCGACATCGATTGCTATTTTCCTTCG
CCGCCGTTTGTGTTTCATGATGCCGTCATGACGCCACGACCCTGCGCACA
GGATTCTGCGACCGACAAATTCGAGGCGAGCGCAGTGTGCGTGCAACGTT
TTTTTCGGCACCGCAAGGGTGGCACGCTGAGCGGCGACCACAGCAACAAG
GGACTCAGACTTCATCCTGGCGTCAACCATGTCCGCTGTCTAAAGAGGTG
GATACAAAAGTTAGGGAAAAGATGGAAATGTCGAAGGCGTGGGAGGGCGG
TTATAATCCACGAGTTTCTCCGAGAGGCAAAGCTTACCCAGAACATCAAG
GCGATATACCGTTTCCGCAAGAGGGTTATAAGGTGCGTCACGATATAGTC
TACTAGTAATGTCCAGTATCATCTCGGTAATATTATTGCTTTTGGTTACA
TATTCTGAGGCTGAAAAGCAACGAATCAAGGGCTTAACTTTGTGGTGTAT
GTTTTTCATTTCTACGCCCCCGTTACCTACCGACTTTCTTTCGTGGCAAC
GATGCGCGACTCACCTACACTCAACGACAGCACCCTTGTATACCGTATAT
AGTTTACCTGCATTTGGCGAGAGGCCTGTGGTGGGCCTTTTTGAATGACA
TTACCTTCCCCCGTCTACCCTAGGCTAAACCACGCGAGGACTTCGCCGCG
TCATCGAACCTAAAACATGCGAACTCAGGTGTCAGGTCTACGCCAAGGGG
TTCTTGAATGTCACTCGTGCTCGACTGGAGCTCCTCGATCTCTACTTCCA
CCGCTGCGAGGAACGACTTCGAGGGAGGCTTGTGGAGCGCGTTCGGCAAC
AGGTCAAAGACGAGGCGGCCGTCGATCTTGAGATCCACCGGCAGATGCAT
CATCATCCGGTCGTAAAGGTCGACCACCGAAGGTGGGGTGAAAAGACGGC
AGCGAGGTCAGGGACCGTAACGGGCAGGAGCAACGACGATGTGAAGCTCA
TGGATGCCTTGGCGAAGATGAGGCTGAAGTCTGCCCTAGACAAGCTGGAG
ACGCGGTTCGCGCACCCCGAGGTCAAGAGCCGCTTGCTGGACGGTCTTCT
CACCAAGGCACGTGTACTTTATCTGATCTGGATGCTGTTCTAGAACCCCC
TTCGTAATAACACAGCACGTATCGAGGTTGCACCCCCGTCCAGAGGCTAG
ACTCTAATACCTTGCGTCCGCGGCTGGCTCATTATTTTTAATTTGTTGAG
CGGGAATAATAAAACGAAGCTCGCGTACACAGAGAGCGGTCCGGGAGGAA
GATGTTGTTTGCTTTGTGCATGACGAAATAGTTTGGACGTACACTGAAGT
CTCGTGATGGCAGAGCCGGTTTAGCAAGCGTCTCAGATGTATTTCTGCTT
TATCGGGATCTCTCTTTTTATCTTGAAGGTACGGGTAGAACACCAGGTTA
ATATCAGACTCACGAACAAGCAGCGCAAGGGAAGGGATCGCAGCGGCGAC
GTCAGTCGCTCAGAGAAATGTCGACGTCAGCGGAGGGAAATTTGCGATGG
AATCATGCTGGCGGAAGCTGTCTTCACCGTCGACGATGCGAGGGACTTGC
TATCGGTGAGCTATTCGCCGGGCTGCAGCTTCTCGTCACCCCTTCCCCCC
ACCACTTACCGCTGGAACGAACCGTAAGGGAAGGTTCACGCTTTCCCGGC
GGCATCTCTCTAGTAGCTCTTCAAAAATCCCAGAGAGTTGCTTAGGGGTT
AGCCGGCCACCTTCCCTCGACACGATGAACGCCGCACGCAGACCTGGCAA
CATCTCGTCGTGGTCTTTCCCAGCTCGCGCGATTAAATAATTGCTTTTAG
GAGTTACTTGGGTTAGATTCATACGCGGCCGTTAGAACAGCCTACTTCTA
TCGTTGAGTTTTTTTTCGCTGTGCGTAACAGCCCTAACCCTGCCACAAGT
GATGACTAACGGCTAACGCGGGGGCGAAACAGTTGCGACGTCATGAACCG
AATCCAATCCCATATATCCCTCTTTTTTCCCCTCAGCCCCTACTCTTTAC
GCCATCTGCTTTTATGTCTCGCTTGTCCCACCACTTCCCCCCTCGTATAT
CATATCGCACGTTCTCACGCCGTGGGGTGCAGCATCTGCCCCAATCGCAT
CCCGTTTTCCCAGTCGACGGCATTGCCAACGAAGACGGAAAGAAGAAAAG
ACGGCGATCGGTCAAGGTTCCGGGTGTCGGTCGCTGGGGAGACGATTCGT
CTCGCGTGACAGCCACAGTCAACATCGCGGGTAATTTTACAGGCGCGATA
AGTTCGTCGGCGGGGGTGGAGACTACGGGGTCGGGGGACGGAAAAGAGAG
GCGCTCTTCGGACAAGGCCGCCGCTGCCGCTGCCGCTACCGCCGCCACTT
TGACGAGGGTGAAGCCAGTGCTGCTCCTGAGGGCGGTTACGGAATCGATC
ATGTGTCAGCTCGTTATGGCCGCCTGGGAGCAGAGCTCGACC back to topCoding sequence (CDS) from alignment at H-elongata_contig12614:427..3918+ >mRNA_H-elongata_contig12614.1949.1 ID=mRNA_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig12614:427..3918+ (Himanthalia elongata Himel1 dioecious) AGGCGAGAGGAGTCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAG AGAGAGGCGACGACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGA CACGTGCCAAGCTTGAGGGACCCAGCCGGGCGGAGATGAGGCGAGAGGAG TCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAGAGAGAGGCGACG ACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGACACGTGCCAAGC TTGAGGGACCCAGCCGGGCGGAGATGAAAGCTCAGGCCCGAGAGCTCGAA CGACGTCAACAATTTTTCCTGTTTGTCGTTGCCGTTGTGGGTGCAACTGT GAGATGGCGCAACGATTGGAAGGAGCGCAAGTTGTTGATGGCTAAGATCT CTGAAACTATCGCTGCGGGCAAGGAAACCAAGAAAGCTCAGGCCCGAGAG CTCGAACGACGTCAACAATTTTTCCTGTTTGTCGTTGCCGTTGTGGGTGC AACTGTGAGATGGCGCAACGATTGGAAGGAGCGCAAGTTGTTGATGGCTA AGATCTCTGAAACTATCGCTGCGGGCAAGGAAACCAAGGATTCTGCGACC GACAAATTCGAGGCGAGCGCAGTGTGCGTGCAACGTTTTTTTCGGCACCG CAAGGGTGGCACGCTGAGCGGCGACCACAGCAACAAGGGACTCAGACTTC ATCCTGGCGTCAACCATGTCCGCTGTCTAAAGAGGTGGATACAAAAGTTA GGGAAAAGATGGAAATGTCGAAGGCGTGGGAGGGCGGTTATAATCCACGA GTTTCTCCGAGAGGCAAAGCTTACCCAGAACATCAAGGCGATATACCGTT TCCGCAAGAGGGTTATAAGGATTCTGCGACCGACAAATTCGAGGCGAGCG CAGTGTGCGTGCAACGTTTTTTTCGGCACCGCAAGGGTGGCACGCTGAGC GGCGACCACAGCAACAAGGGACTCAGACTTCATCCTGGCGTCAACCATGT CCGCTGTCTAAAGAGGTGGATACAAAAGTTAGGGAAAAGATGGAAATGTC GAAGGCGTGGGAGGGCGGTTATAATCCACGAGTTTCTCCGAGAGGCAAAG CTTACCCAGAACATCAAGGCGATATACCGTTTCCGCAAGAGGGTTATAAG GTGTCAGGTCTACGCCAAGGGGTTCTTGAATGTCACTCGTGCTCGACTGG AGCTCCTCGATCTCTACTTCCACCGCTGCGAGGAACGACTTCGAGGGAGG CTTGTGGAGCGCGTTCGGCAACAGGTCAAAGACGAGGCGGCCGTCGATCT TGAGATCCACCGGCAGATGCATCATCATCCGGTCGTAAAGGTCGACCACC GAAGGTGGGGTGAAAAGACGGCAGCGAGGTCAGGGACCGTAACGGGCAGG AGCAACGACGATGTGAAGCTCATGGATGCCTTGGCGAAGATGAGGCTGAA GTCTGCCCTAGACAAGCTGGAGACGCGGTTCGCGCACCCCGAGGTCAAGA GCCGCTTGCTGGACGGTCTTCTCACCAAGGCACGTGTGTCAGGTCTACGC CAAGGGGTTCTTGAATGTCACTCGTGCTCGACTGGAGCTCCTCGATCTCT ACTTCCACCGCTGCGAGGAACGACTTCGAGGGAGGCTTGTGGAGCGCGTT CGGCAACAGGTCAAAGACGAGGCGGCCGTCGATCTTGAGATCCACCGGCA GATGCATCATCATCCGGTCGTAAAGGTCGACCACCGAAGGTGGGGTGAAA AGACGGCAGCGAGGTCAGGGACCGTAACGGGCAGGAGCAACGACGATGTG AAGCTCATGGATGCCTTGGCGAAGATGAGGCTGAAGTCTGCCCTAGACAA GCTGGAGACGCGGTTCGCGCACCCCGAGGTCAAGAGCCGCTTGCTGGACG GTCTTCTCACCAAGGCACGTGTACGGGTAGAACACCAGGTTAATATCAGA CTCACGAACAAGCAGCGCAAGGGAAGGGATCGCAGCGGCGACGTCAGTCG CTCAGAGAAATGTCGACGTCAGCGGAGGGAAATTTGCGATGGAATCATGC TGGCGGAAGCTGTCTTCACCGTCGACGATGCGAGGGACTTGCTATCGGTA CGGGTAGAACACCAGGTTAATATCAGACTCACGAACAAGCAGCGCAAGGG AAGGGATCGCAGCGGCGACGTCAGTCGCTCAGAGAAATGTCGACGTCAGC GGAGGGAAATTTGCGATGGAATCATGCTGGCGGAAGCTGTCTTCACCGTC GACGATGCGAGGGACTTGCTATCGAAAAGACGGCGATCGGTCAAGGTTCC GGGTGTCGGTCGCTGGGGAGACGATTCGTCTCGCGTGACAGCCACAGTCA ACATCGCGGGTAATTTTACAGGCGCGATAAGTTCGTCGGCGGGGGTGGAG ACTACGGGGTCGGGGGACGGAAAAGAGAGGCGCTCTTCGGACAAGGCCGC CGCTGCCGCTGCCGCTACCGCCGCCACTTTGACGAGGGTGAAGCCAGTGC TGCTCCTGAGGGCGGTTACGGAATCGATCATGTGTCAGCTCGTTATGGCC GCCTGGGAGCAGAGCTCGACCAAAAGACGGCGATCGGTCAAGGTTCCGGG TGTCGGTCGCTGGGGAGACGATTCGTCTCGCGTGACAGCCACAGTCAACA TCGCGGGTAATTTTACAGGCGCGATAAGTTCGTCGGCGGGGGTGGAGACT ACGGGGTCGGGGGACGGAAAAGAGAGGCGCTCTTCGGACAAGGCCGCCGC TGCCGCTGCCGCTACCGCCGCCACTTTGACGAGGGTGAAGCCAGTGCTGC TCCTGAGGGCGGTTACGGAATCGATCATGTGTCAGCTCGTTATGGCCGCC TGGGAGCAGAGCTCGACC back to top
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