mRNA_H-elongata_contig126113.1947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126113.1947.1
Unique NamemRNA_H-elongata_contig126113.1947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: D8LK28_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK28_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 5.660e-31
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    7 RQVDTNILNIDMAALGDAAPFATGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAP 288
            R+VDTNILN+DMAALG+AAP+ATGD TIC  C+ACLSAVS+L     +S  V +E +YDWTCEFC + NR EL   E P+ GQ SVDY+LEAAP
Sbjct:  184 RKVDTNILNVDMAALGNAAPYATGDATICNDCRACLSAVSVLAPVSDDSGAV-VEDVYDWTCEFCHKTNRVELGRGELPVVGQDSVDYVLEAAP 276
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: A0A6H5JFL4_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.220e-23
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   40 MAALGDAAPFATGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAP 288
            MAALG+AAP+ATGD TIC  C+ACLSAVS+L     +S  V +E +YDWTCEFC   NR EL   E P+ GQ SVDY+LEA P
Sbjct:    1 MAALGNAAPYATGDATICSYCRACLSAVSVLAPVSDDSGAV-VEDVYDWTCEFCHNTNRVELGRGELPVVGQDSVDYVLEAPP 82
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: A0A7S3YA60_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA60_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 4.350e-11
Identity = 39/97 (40.21%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    7 RQVDTNILNIDMAALGDAAPFA-TGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAPIA 294
            RQVDTN++ ID+  LG  A    +GDP  C  C ACL++ S+L     E+          W CEFC   N  ++   EKP   Q SVDYML +   A
Sbjct:   83 RQVDTNVVRIDLGTLGSEADAVFSGDPQFCANCGACLNSESVLGPVEGEAFKQS------WECEFCEHANLLDMVAEEKP--SQASVDYMLSSGEAA 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK28_ECTSI5.660e-3164.89VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JFL4_9PHAE3.220e-2361.45VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YA60_HETAK4.350e-1140.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126113contigH-elongata_contig126113:532..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue7.7e-27
Seed eggNOG ortholog2880.D8LK28
EggNOG free text desc.von Willebrand factor (vWF) type A domain
EggNOG OGs29A2H@1,2RH4Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.1698575-CDS-H-elongata_contig126113:531..8251622929747.1698575-CDS-H-elongata_contig126113:531..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126113 532..825 -
1691679141.885806-CDS-H-elongata_contig126113:531..8251691679141.885806-CDS-H-elongata_contig126113:531..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126113 532..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126113.1947.1prot_H-elongata_contig126113.1947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126113 532..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126113.1947.1

>prot_H-elongata_contig126113.1947.1 ID=prot_H-elongata_contig126113.1947.1|Name=mRNA_H-elongata_contig126113.1947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
VPRQVDTNILNIDMAALGDAAPFATGDPTICKGCQACLSAVSILVTARAE
SQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAPIA
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mRNA from alignment at H-elongata_contig126113:532..825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126113.1947.1 ID=mRNA_H-elongata_contig126113.1947.1|Name=mRNA_H-elongata_contig126113.1947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig126113:532..825- (Himanthalia elongata Himel1 dioecious)
GTTCCCCGCCAGGTGGACACCAATATTCTCAACATCGACATGGCGGCGCT
CGGGGACGCGGCCCCCTTCGCCACTGGAGACCCTACCATCTGCAAAGGCT
GCCAAGCGTGCCTCAGCGCCGTGTCGATCCTCGTGACGGCCCGCGCGGAA
AGTCAAGACGTCGACATAGAGGGTATCTACGACTGGACCTGCGAGTTCTG
CGGAGAAGTCAATCGCGCCGAGCTCGACGACATGGAGAAGCCCTTGGAGG
GACAGGGCAGCGTGGACTACATGCTAGAAGCTGCTCCCATTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig126113:532..825-

>mRNA_H-elongata_contig126113.1947.1 ID=mRNA_H-elongata_contig126113.1947.1|Name=mRNA_H-elongata_contig126113.1947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig126113:532..825- (Himanthalia elongata Himel1 dioecious)
GTTCCCCGCCAGGTGGACACCAATATTCTCAACATCGACATGGCGGCGCT
CGGGGACGCGGCCCCCTTCGCCACTGGAGACCCTACCATCTGCAAAGGCT
GCCAAGCGTGCCTCAGCGCCGTGTCGATCCTCGTGACGGCCCGCGCGGAA
AGTCAAGACGTCGACATAGAGGGTATCTACGACTGGACCTGCGAGTTCTG
CGGAGAAGTCAATCGCGCCGAGCTCGACGACATGGAGAAGCCCTTGGAGG
GACAGGGCAGCGTGGACTACATGCTAGAAGCTGCTCCCATTGCCGTTCCC
CGCCAGGTGGACACCAATATTCTCAACATCGACATGGCGGCGCTCGGGGA
CGCGGCCCCCTTCGCCACTGGAGACCCTACCATCTGCAAAGGCTGCCAAG
CGTGCCTCAGCGCCGTGTCGATCCTCGTGACGGCCCGCGCGGAAAGTCAA
GACGTCGACATAGAGGGTATCTACGACTGGACCTGCGAGTTCTGCGGAGA
AGTCAATCGCGCCGAGCTCGACGACATGGAGAAGCCCTTGGAGGGACAGG
GCAGCGTGGACTACATGCTAGAAGCTGCTCCCATTGCC
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