mRNA_H-elongata_contig12611.1945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12611.1945.1
Unique NamemRNA_H-elongata_contig12611.1945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: D8LDJ7_ECTSI (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ7_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 3.710e-158
Identity = 232/272 (85.29%), Postives = 251/272 (92.28%), Query Frame = 3 
Query:  102 MMSMGGGSGSMLVLNDPAAKISSSE--SAATATPVVNLSAFASRNDLVVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTGECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            M S GGGSGSMLVLNDPAA++SS E  +A +A PV NLSAFAS ND+VVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTV+ANVVEITNSFAVPHLEKN+EVAVGKDFNKSMLALQQRVN RESVVGWYATSFDGVLIVDDSSLIHDFYTGEC RPVHLVVDTA+K+NIVGCK FIS PLEI G ALANVFH+VKV++VS EAERICIDRMVKGQE+ F  PEGLAEV+S+MASLETSMQRL+ ML+QA+EYV TVVDGKLPADPHMGRK+
Sbjct:    1 MSSFGGGSGSMLVLNDPAAQLSSVEGKAATSAAPVTNLSAFASSNDIVVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGWYATSFDGVLIVDDSSLIHDFYTGECERPVHLVVDTALKNNIVGCKAFISTPLEIDGSALANVFHEVKVSLVSAEAERICIDRMVKGQEEAFTTPEGLAEVDSRMASLETSMQRLVTMLQQAEEYVGTVVDGKLPADPHMGRKL 272
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A835YQU3_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU3_9STRA)

HSP 1 Score: 328 bits (841), Expect = 3.420e-109
Identity = 167/269 (62.08%), Postives = 206/269 (76.58%), Query Frame = 3 
Query:  105 MSMGGGSGSMLVLNDPAAKISSSESAATATPVVNLSAFASRNDLVVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTGECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            MS  G  G+ L+LNDPA ++S +  A    P   L+ +AS ND+VVKVHP+VLFSVLDHYLRRPE Q RVIGTLLG V+ANVVE+TNSFAVPH EKN+EVAVGKDFNK MLAL   VN +E +VGWYAT+FDG  +VD+SSLIH+F+T EC  PVH+VVDT++  + +GC+ +IS PLEI G ALANVFHQV+V + S+EAERICIDRMVKGQ      P+G+A V+S+  SLE+SM RLL ML  A  +V  VV G++P D  +GRK+
Sbjct:    1 MSFSGADGA-LILNDPATQLSRTGDA----PAPTLTGYASTNDIVVKVHPVVLFSVLDHYLRRPEGQVRVIGTLLGKVNANVVEVTNSFAVPHQEKNDEVAVGKDFNKQMLALSGLVNGQERIVGWYATTFDGAQVVDNSSLIHEFFTTECESPVHIVVDTSLASDTIGCRAYISSPLEIAGEALANVFHQVQVQLESSEAERICIDRMVKGQAGGVLTPDGIASVDSEAVSLESSMTRLLAMLEAASAFVDKVVAGEVPGDAQVGRKI 264
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A7S2WB79_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB79_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.750e-87
Identity = 129/225 (57.33%), Postives = 168/225 (74.67%), Query Frame = 3 
Query:  237 VVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTGECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            +VKVHP VLFS+LDH++RR E Q RVIGTLLG V  + VE+TN FAVPH +K +EVAVG+ FNK+M  L QRVN +E +VGWYATS +GV +VD SSLIH FY  EC+ PVHLVVDTAM+ + +G K ++S PL + G+ LAN+FHQ+KV + S+E ERICIDRM+KGQ+ PF   E LAE+  ++  +  SM+RLLGM+  A  YV  V+ G++ AD   GR++
Sbjct:   67 LVKVHPAVLFSILDHFIRRQEGQVRVIGTLLGYVEESCVEVTNCFAVPHSDKQDEVAVGQAFNKTMYDLHQRVNPKEQIVGWYATSMEGVSVVDSSSLIHGFYAEECADPVHLVVDTAMRGDTLGVKAYVSTPLTVAGIELANMFHQIKVELFSSEPERICIDRMIKGQKSPFTSSESLAEITEELHGIGVSMERLLGMIEVASSYVDKVIAGEVQADEETGRRI 291
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A7S2DND3_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND3_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.000e-86
Identity = 131/229 (57.21%), Postives = 168/229 (73.36%), Query Frame = 3 
Query:  219 ASRNDLVVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTGECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGR 905
            A  +  +VK+HP VLFS++DH++RRPE Q RVIGTLLG  +   VE+ N FAVPH EK +EVAVG+ FNK+M +L  RVN++E +VGWYATS DG+ IVD SSLIHDFY  EC+ P+H+VVDTA+  N VG K ++S PL+I GV  AN+FHQV+V M S++AERIC+DRM+KGQ  PF   E L+ +  ++ SLETSMQRLLGM+     +V  VV G+  AD   GR
Sbjct:   25 AEGSSRLVKIHPSVLFSIIDHFIRRPEGQTRVIGTLLGYSTDTHVELVNCFAVPHSEKQDEVAVGQTFNKNMCSLHTRVNTKEKIVGWYATSMDGMCIVDSSSLIHDFYANECADPIHIVVDTALIANTVGVKAYVSTPLQIAGVEFANMFHQVQVEMSSSDAERICMDRMLKGQAAPFQTSEALSALPHELTSLETSMQRLLGMIELVSNHVDKVVSGEREADNETGR 253
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: K0TIU7_THAOC (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIU7_THAOC)

HSP 1 Score: 228 bits (580), Expect = 1.250e-69
Identity = 124/271 (45.76%), Postives = 171/271 (63.10%), Query Frame = 3 
Query:  120 GSGSMLVLNDPAAKISSSESAATATPVVNLSAFASRNDLVVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSF------DGVLIVDDSSLIHDFYTGECSR-PVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            GS   L+L  PA  +++  +A+ ++  V            V VHP+VL SVLDH+ RR E   RVIGTLLG  + + VEITNSFAVPH E+ +EVA+GKDFN+ ML+L  R N RE+VVGWYAT+       +   I D SSLIH+FY GEC   P+HLVVDTA+K + +  + + S P+ I G  LAN+FH++++++ S+EAERIC+DRM+   + P    +G      +  +L  SM++LL ML    EYV  VVDG +PAD  +G  +
Sbjct:   10 GSSPALILTKPARSLAAVAAASASSESVPA--------CQVNVHPLVLLSVLDHHTRRQEGAGRVIGTLLGKRNGDTVEITNSFAVPHAERGDEVAIGKDFNRQMLSLHLRANPRETVVGWYATALPDEATGESHCIADTSSLIHEFYAGECDDDPIHLVVDTALKADAIALRAYKSTPVVIKGEPLANMFHEIRLSVRSSEAERICVDRMIGATDSP----DGADPTQDEGEALRVSMEKLLAMLETCSEYVDKVVDGSVPADDALGMDI 268
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: B8LD20_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD20_THAPS)

HSP 1 Score: 221 bits (563), Expect = 1.440e-67
Identity = 114/234 (48.72%), Postives = 153/234 (65.38%), Query Frame = 3 
Query:  240 VKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSF---------DGVLIVDDSSLIHDFYTGECSR-PVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            V VHP+VL SVLDH+ RR E   RVIGTLLG    + VEITN FAVPH E+ +EVA+GKDFN+ MLAL  R N RE+V+GWYAT+          +   I D SSLIH+FY  EC   P+HLVVDT+++ + +  + + S P+ + G  LAN+FH++++A+ S+E+ERIC+DRM++      G P    E     A+L+ SM+RLL ML    EYV  VVDG + AD  +GR +
Sbjct:    1 VLVHPIVLLSVLDHHTRRQEGAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRETVIGWYATALPDENDPVNGESKCIADTSSLIHEFYATECEDDPIHLVVDTSLETDAMALRAYKSTPVSVKGEPLANLFHEIRLAVKSSESERICVDRMIRSASSAEGAPASQDE----SAALQISMERLLAMLETCSEYVDKVVDGTISADDQVGRDI 230
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A7S3V657_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V657_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.610e-64
Identity = 119/257 (46.30%), Postives = 159/257 (61.87%), Query Frame = 3 
Query:  240 VKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSF---------------DGVLIVDDSSLIHDFYTGECS-----RPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVK----------GQEKP---FGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            V VHP+VL S+LDH+ RR ++  RVIGTLLG    N VE+TN FAVPH E+ +EVA+GKDFN+ MLAL  R N  E+VVGWYAT+F               +   + D SSLIH+FY GEC       PVHLVVDT++ ++ +G KGFIS  + + G  LAN+FH+V++ + S+E+ERI +D M++          G+EK     G P G         SL+ SM++LL ML  A +YV  VVDGKL AD  +G ++
Sbjct:   29 VVVHPLVLLSILDHHTRRQDSAGRVIGTLLGRRDGNKVEVTNCFAVPHAERGDEVAIGKDFNRQMLALHLRANRSETVVGWYATAFPSNGNDDNDDSNATTETRCLADTSSLIHEFYAGECEDTVMDSPVHLVVDTSLVEDTIGLKGFISSAVTLNGEPLANIFHEVRLLLKSSESERIVLDEMIRSLGGGAKKLEGEEKKDESVGEPSG--------GSLQVSMEKLLEMLETASDYVGQVVDGKLEADDAVGNQI 277
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A7S1ZLF8_9STRA (Eukaryotic translation initiation factor 3 subunit F n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.910e-63
Identity = 115/259 (44.40%), Postives = 158/259 (61.00%), Query Frame = 3 
Query:  240 VKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSF------------DGV--------------LIVDDSSLIHDFYTGECSR-PVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQE--------KPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            V VHP+VL SVLDH+ RR E   RVIGTLLG    + VEITN FAVPH E+ +EVA+GKDFN+ MLAL  R N RESVVGWYAT+             DG                I D SSLIH+FY GEC   P+HLV+DT++ D+ +  + + S P+++ G  LAN+FH++++ M  +  E+IC+D+M+K  +        +   VPE  A   S +A+L+ SM++L  ML  A  YV +VVDG +P +  +GR++
Sbjct:   36 VTVHPLVLLSVLDHHTRRQEGAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRESVVGWYATALPEEDEGNEEETKDGGKGKKKMTSSPKSYRCIADTSSLIHEFYAGECDDDPIHLVIDTSLIDDSLALRAYRSTPVQVKGEPLANMFHEIRLGMTCSGTEKICVDKMIKSDDLLKRRNKSQEEEVPEDAASDESPVAALQISMEKLYSMLETATSYVDSVVDGSVPPNDVVGRQI 294
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A7R9W361_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W361_9STRA)

HSP 1 Score: 211 bits (536), Expect = 6.240e-63
Identity = 120/254 (47.24%), Postives = 156/254 (61.42%), Query Frame = 3 
Query:  240 VKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSF----DGV-----------------LIVDDSSLIHDFYTGECSR-PVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQ--EKPFG------VPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            V VHP+VL SVLDH+ RR E   RVIGTLLG    + VE+TN FAVPH E+ +EVA+GKDFN+ MLAL  R N +E+VVGWYAT+     DG                   I D SSLIH+FY GEC   PVHLVVDT+++ + V  + + S P+++ G  LAN+FH++ +A+  +E+ERI +D+MVK Q  EK  G                + A+L  SM+RLL ML  A  YV  VV+GK PAD  +GRK+
Sbjct:   29 VVVHPLVLLSVLDHHTRRQEGAGRVIGTLLGRRDGDRVEVTNCFAVPHAERGDEVAIGKDFNRQMLALHLRANRKETVVGWYATALPVDSDGGEGEEGADSSGSGGGEYRCIADTSSLIHEFYAGECDDDPVHLVVDTSLRTDAVSLRAYRSTPVQVRGEPLANLFHEIGLAVRCSESERIAVDQMVKAQNREKADGGEXXXXXXXXXXXXEDEAAALRVSMERLLSMLETASAYVDGVVEGKTPADDKVGRKI 282
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BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Match: A0A067D1T1_SAPPC (Eukaryotic translation initiation factor 3 subunit F n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1T1_SAPPC)

HSP 1 Score: 208 bits (530), Expect = 1.250e-62
Identity = 114/227 (50.22%), Postives = 151/227 (66.52%), Query Frame = 3 
Query:  237 VVKVHPMVLFSVLDHYLRRPENQKRVIGTLLGTVSAN--VVEITNSFAVPHLEKNNEVAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTGECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVSTEAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQEYVTTVVDGKLPADPHMGRKV 911
            +V +HP+V+F +LD +LRR E+QKRVIGTLLG V A   VV I+NSF VPHLEK +EVAVGKD+++ ML L QRVN  E VVGWYATS     I ++S LIH+FY+ EC+ PVH+VVDT+++ + +   GFIS  L +  VALAN F QVKV   + EAE I +D M K          G A + S + +LE ++ RL  +L  +  YV  VV GK  A+P +GR++
Sbjct:   12 LVHIHPVVVFQILDRFLRRSEDQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSTTAEAINENSCLIHEFYSSECASPVHVVVDTSLESDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAESIALDVMAKRSS-------GSASLPSDLEALEQAIVRLHELLATSAAYVGDVVAGKQAANPKLGREL 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12611.1945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ7_ECTSI3.710e-15885.29Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YQU3_9STRA3.420e-10962.08Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WB79_9STRA2.750e-8757.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2DND3_9STRA1.000e-8657.21Eukaryotic translation initiation factor 3 subunit... [more]
K0TIU7_THAOC1.250e-6945.76Eukaryotic translation initiation factor 3 subunit... [more]
B8LD20_THAPS1.440e-6748.72Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S3V657_9STRA1.610e-6446.30Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1ZLF8_9STRA1.910e-6344.40Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9W361_9STRA6.240e-6347.24Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A067D1T1_SAPPC1.250e-6250.22Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12611contigH-elongata_contig12611:833..6703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue7.6e-125
Seed eggNOG ortholog2880.D8LDJ7
Preferred nameEIF3F
KEGG koko:K03249
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0000122,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0016020,GO:0016032,GO:0016043,GO:0016282,GO:0016579,GO:0016787,GO:0019080,GO:0019081,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045747,GO:0045892,GO:0045934,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0080090,GO:0097159,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1310@1,KOG2975@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontranslation initiation factor eIF3 f subunit
Ec32 orthologEc-15_000300.1
Exons7
Model size911
Cds size810
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12611.1945.1prot_H-elongata_contig12611.1945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12611 833..6602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.9243937-CDS-H-elongata_contig12611:832..9401622929746.9243937-CDS-H-elongata_contig12611:832..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 833..940 -
1691679141.7722268-CDS-H-elongata_contig12611:832..9401691679141.7722268-CDS-H-elongata_contig12611:832..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 833..940 -
1622929746.9429493-CDS-H-elongata_contig12611:1183..13091622929746.9429493-CDS-H-elongata_contig12611:1183..1309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 1184..1309 -
1691679141.7868793-CDS-H-elongata_contig12611:1183..13091691679141.7868793-CDS-H-elongata_contig12611:1183..1309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 1184..1309 -
1622929746.9644372-CDS-H-elongata_contig12611:1501..15821622929746.9644372-CDS-H-elongata_contig12611:1501..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 1502..1582 -
1691679141.8037903-CDS-H-elongata_contig12611:1501..15821691679141.8037903-CDS-H-elongata_contig12611:1501..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 1502..1582 -
1622929746.980431-CDS-H-elongata_contig12611:4605..47201622929746.980431-CDS-H-elongata_contig12611:4605..4720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 4606..4720 -
1691679141.8122013-CDS-H-elongata_contig12611:4605..47201691679141.8122013-CDS-H-elongata_contig12611:4605..4720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 4606..4720 -
1622929747.0038025-CDS-H-elongata_contig12611:5232..53121622929747.0038025-CDS-H-elongata_contig12611:5232..5312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 5233..5312 -
1691679141.821408-CDS-H-elongata_contig12611:5232..53121691679141.821408-CDS-H-elongata_contig12611:5232..5312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 5233..5312 -
1622929747.022902-CDS-H-elongata_contig12611:5539..56951622929747.022902-CDS-H-elongata_contig12611:5539..5695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 5540..5695 -
1691679141.8322-CDS-H-elongata_contig12611:5539..56951691679141.8322-CDS-H-elongata_contig12611:5539..5695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 5540..5695 -
1622929747.040361-CDS-H-elongata_contig12611:6458..66021622929747.040361-CDS-H-elongata_contig12611:6458..6602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 6459..6602 -
1691679141.8460157-CDS-H-elongata_contig12611:6458..66021691679141.8460157-CDS-H-elongata_contig12611:6458..6602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12611 6459..6602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.055482-UTR-H-elongata_contig12611:6602..67031622929747.055482-UTR-H-elongata_contig12611:6602..6703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12611 6603..6703 -
1691679141.8553164-UTR-H-elongata_contig12611:6602..67031691679141.8553164-UTR-H-elongata_contig12611:6602..6703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12611 6603..6703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12611.1945.1

>prot_H-elongata_contig12611.1945.1 ID=prot_H-elongata_contig12611.1945.1|Name=mRNA_H-elongata_contig12611.1945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
MMSMGGGSGSMLVLNDPAAKISSSESAATATPVVNLSAFASRNDLVVKVH
PMVLFSVLDHYLRRPENQKRVIGTLLGTVSANVVEITNSFAVPHLEKNNE
VAVGKDFNKSMLALQQRVNSRESVVGWYATSFDGVLIVDDSSLIHDFYTG
ECSRPVHLVVDTAMKDNIVGCKGFISMPLEIGGVALANVFHQVKVAMVST
EAERICIDRMVKGQEKPFGVPEGLAEVNSKMASLETSMQRLLGMLRQAQE
YVTTVVDGKLPADPHMGRKV
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mRNA from alignment at H-elongata_contig12611:833..6703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12611.1945.1 ID=mRNA_H-elongata_contig12611.1945.1|Name=mRNA_H-elongata_contig12611.1945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5871bp|location=Sequence derived from alignment at H-elongata_contig12611:833..6703- (Himanthalia elongata Himel1 dioecious)
GGCCTCGGGGGCGCCAATTTGCCTACACCCGTTTACCCATCGCACTAAAT
TGCGTGGGGACGCCTACGGAGGTTCTTGTCTGACTCTACGCTCGCACGAG
AATGATGTCCATGGGCGGAGGATCTGGCTCGATGCTCGTCTTGAACGACC
CCGCGGCAAAGATCTCCAGCTCAGAGAGTGCTGCCACCGCCACGCCCGTG
GTCAATCTCTCTGCGTTCGCCAGCCGTAACGACCTCGTCGTGAAGGTGAG
TGCTTCTGAGGTTCTGTGGGTGTTATGGTCCACAATGTTTTTTTCTGTGG
TAGCATCGACTGCCATGATGATCTACTTGGGTAGATCGTCATGGCTTAAC
GGCTGATGCATCTCCAGTTACCTGTGGCTCACCAAAAAAATGCACGCTCT
TGTCCTATATGTGTTGGTTGTTGATTTTCTGCAAGTTTGTCGAGGATTTA
GCCGTGTGCATGAATCCAGAAGCTTGCGTCGAGTTATCTTTAAGGTAAAA
ATAAAACATTACCCCCCCCCCCCCTCCCTCCTTTTTAGTGAGCAAATTCA
AGTAAAAAGTTTAAAAGCTTTTTGAGCAGTCACCAGTCTTTACTGGATGT
CGCTTTGAAGGCGGTTGGTTTACCCCCCATAGTTACGCTACCGCAATCTT
TGCGGACTACAAAGTAATTTGAGTTTATGAGCATGCTTTCGACCAATCAA
AGCCCGATTTTGATTGAAATCGGCTGGAAATTTTAATTTTTGTATGGCGG
TAAGACCCGGCCTAACCTGCCAAGAAACATTTGTCAAATTAACCCTTTTG
GAACTGGATTTCAGGTTTTATATTGAATTTAGTATATAAAAAAAAGATCG
AGTTTCATAAGGGTTCACTGATCTCTTCTCAATTCACGCTTTAAAAAAAC
GTATACAATATAAGTTATAGAACCCCCCCCCTCTTTTCACCTATCGACAA
CCATTAGACAAACTTTGTTCTTATGCCACTGCACCCTGCCGTTATTTATT
TTGGCCAGGTTCATCCGATGGTACTGTTTTCTGTATTAGACCACTATCTC
CGACGACCCGAGAACCAAAAACGCGTGATCGGAACACTTCTGGGAACAGT
GTCCGCGAACGTGGTAGAGATCACGAACTCCTTCGCCGTGCCCCATTTAG
AGAAGAACAACGAGGTGCGCTGAGGCTGAAAATGTTCAAGATCACTTCGA
AACTGGCGATCTTTTAAAAATGAAACTTCATTAGCCTTTATATACCGGAT
AGGTCTTTTTAGCGGAATACTAGAAAAAACTAACACGAGTCATTTTGGCG
AATGCCCCCAAATGTTTTGGACAATTTTGTTAAAGAGTTTCTTGTGATGT
ACCAAAACCCAATGCGAAAATGATTTATGTTTTTGCGGCAGGTGGCAGTT
GGGAAGGACTTCAACAAGTCCATGTTGGCGTTGCAGCAGAGGGTCAATAG
CCGAGAATCCGTCGTGGGCTGGTGAGATCCTGTCACTTTCCTCCCATGTG
TAGTTTGCACCATACCGTACCGTACTGTTGCTTTATTTAACGTCCCCTTG
TGACCCCGACGCACATTTCGAAGCCGGACAAGCTTTTCAAATGGTAGCTT
GTGTACCGGTCAAATAATTGCTGCCAGATTAACCGGCCCCAAAATGGGGT
GGCTCGAGGTTTTGGGTGGGAGGGGTTCGCGAGAGACCCTGCAGAGACAT
GTGGCCTTCTCTGGTCGAACTCCCTCTCAATAACTGCGGGTGCATTTATA
TGTTATTTCATTAACTTTGCCATGGGTAATCGAGAGGATTGTTTTTTGAA
CAAATGCTCGTGTCGATATAAATCCTGGTGCTTGTGTAAATATTTTTCGA
CGAGGGTTTTAATGAGTTTAAACGTTTTTTAATGGAAACCCTGAAGTAAT
TCGATTATTTGGTTGTTCTTTTGTGGTAAGACTTTGTTTACTGGTGCATG
TCGTCACGCCTTGTCGTTCCTATGGTGGAAAAGGTACGCGACTTCATTCG
ACGGTGTTTTGATCGTGGACGATTCTTCGCTCATCCATGATTTTTACACG
GGAGAGTGCTCTCGACCAGTTCACCTTGTCGTCGATACCGCTATGAAGGT
GAAATGTGCAACCTACTTTTTTGTCGCGCGGGGTTTTAAGGGGGTATTAG
AGGCATGCGCTGTAAGGTGAAGTCACATACATCCGTGAGGCCCCTTTTAC
CGAAATGACTCCTTTTTTATGAAGGACGTCGGTTGGAACAGAGCTTTACT
GGGTAAAGTTGAATCTAGTGTTGGTTAGGGAAGATACCAGGATTTGATGG
ACCTCGGTGCCGATGATGTCAATGCTAAAAAGCCTTTGATGCTGACTTGA
CCGTGAGGAAGCAAACTAGACTTCGATCTGACGGCGCTGTTTTAGGGAAA
TTTCTTGTTAAAAACGTTTTTTTTCGTTCTCAGCAATCCTCGTTTATTGG
TGCCGATCATTTTGCTCCAATGACTGTTTTGATTTGAAGGTTGGTTGGAA
CAGAGTTTGGCTAGGTCAGGTAAAATCTAATAATTTGATGGGAAAAATGT
GAAAATTTGATGGAACTCGGTGCCGATGATGTCAATGCTAAAAAGACTTT
GATGCTGACTTGATCGTGAGGAAGCAAACTAGACTACGATGGACTGATGG
CGCCCTCCCAGCGATTGTTCTGTATAACGGTATAACTCATTTTTTTTTTT
GTGTTTTGTTTTCGGTTTTTGTTTCATCGATACCGGGTTTGTCGAAAAAA
GTGTTTTGTTTTATCGACTGACGGCTCCATTCTACGGAGTCTCATAACAG
TAAATAGTAGTAATAGTGTAGGTGGAGTTCATAGATTAAAAATAAATAAA
TAATGCTACCATCTTCAATAAATTCTATTTTTGTGTCCAGATATCCAGAA
CTCTCTCTACTGTTGTATGTTTTACTGGTCAGTGAAACGGTACATATAAT
GCGTGTGGGAAAAGAGAGGCGTACAAAAATTGGCCCATGGGGTTTGCCTG
AATAAACTAGAATCTGTTACTCATGCTACCTTAAGGACTGATCGCTCAAT
GTCGGTAGACTATCGGTAGTAAACACCATCGGTACAATATTGCGTGGCCT
AATGAAATCGGGGCTGGTCCGATGATGATTGATGATAAGGAGAAACCGTC
CTGGAAAACGGGAAAATCGAGAGGATCCCGAGAGTTCGCACCAAATTCAG
TCTGGGTTGGGAGAATGAGCAGGCTGACGCATAAAGGGACGGCCATACAC
GTCTCGCGAGACCTTATCTTAGGAACTACCGGGAACAGGAAAATATATAT
TTTCCTTTTTATCAATTTGCATTAAACCGCGAAAACCGGCAAGACACGTA
ATTGGGCGCCACGTTGGTTCGCAAATACTCCCCCCTATGGGGAGCTATCT
CTTGATACGCTGGATTGGCTTATCCTACTCGCGTTGCATACGCAACCGCG
CCGGACTAACGATACACCGTTTCCGATTGGCTGATCATCATCGTTGCTGT
CGTGGCGAGTATTTCCACATCGATCCCTCCCATCTTCTCCCTCAACGCTA
CAGGGTTAGTGACCGTTGTATCCCCACCTTGAATTCCTGCCACCCTCGTT
GCCGCGATAGCGGTAGCCAGCTCCGACATCGTGGTCACTGTAACCGCATC
CGCGCGAGTTCCCCCATGCCACATTGTCGCTTCCACTGATCGTGCGGCTA
CTACCGGTGCGATCGGTTCCTCGCCTTTGTTCTGTACTGGTAGCGCGAAG
CACCCTTCAAGCTCCCTCCTCTGCCACGCCCGTTGCCGCGTCAGCCTCCA
CGAAGATGTCCTCTTCGACTCCCCATCTCCTCCTCCTCCTCCTCCTCTTC
TGCCACTACCGCTGCGATGACGCGAGACTTTGTGCCTTTGCTCATCGCTA
GAGCTAGGCTGTCCGTTTAGCCGTGGCTGGGCGACCGACGGCTGGGGCCA
TAGCCCCGCGGGTCCTCGCGGAAAGCACCAAGTTCAGGGCGAAAGACGAG
TGTCGCTGAAGTTTTGCCGTCTCTTGTCCCCGGGCCGCTGCTAACTAATC
GCCCTCCAGATATCCTCGCTTGAGCACTCGGTAGGCGCGACAGTCTGGTA
GAATCTCACTGTGTCTTCGCCGACATCGCCGCAGGTGGAGAAAGCTAGAG
TTTGGAGGGTGTAGGTAGGGGATCAAACGATCCTCGATACGTGTCACTCT
TGCGCTTCGTTGCCAAGCGGAAGGCGTTGCCGCCCCGTTGGGCGGAGCTG
GCCAGATGGCAGGGCCCATGGGATTGGCAACCGTGATATCGATGAGAAGG
CCCTTCGTGCTGTCGTCATGACTGAGGAAGGCTCCCGGCTTCCTCGTGAT
GTCCGTACGGAGCGATCCTTCTACCTGCGCGATATGCTCAATGTGATGCG
GGAAGCTGCAGCCGAGCATGGCCACCAAGCAGTGAGCAAGGTCCTGCGCG
GGTGCAGCGTCCCGCATTATCGCGTCGGTAGGAGGATCGCTCCGTGTGGA
CATAACGAGGAAGCTGGGAGCCTTCCTCAGCCATGACAGCACGAAGGGTC
TTCTCATCGATGTCAAGGTCGCCAACCCCATGGGCACTTGCCATCTGGCC
AGCTCCGCCCGACGGGGCGGCAACGCCTTCCGCTTGGCAAAGAAGCGATG
GAGTGACACGTATCGGGGATCGTTTGATCCCGCTGCCTACACCCTCCAAA
CTCTTGCCTTCTCTACCTGCGTCGATGTTGAGCTGACATCAACCAGGAGG
CAACCAAATCCAGTTGATCCTGCTATATCTATCAATGTCAAGGAGTGTGT
GGCCCAGGATGTAAAATAAAAATATATTTAAGAGAATATTTAAATCGATT
GTAAGTAGACAAGCTTGAACACGATTGACCAGGATAGAAAATAACTCAGC
ATTCCATCTCCACCGCCAATGTTATTTGGCCGTTTTCGAACATTCTTATC
AAGTTGCATTTTAAACCGCGCAATCCGGCAAAACACGGAAGGGGAAACTC
CGTAGAAAGCGTGTTTGAGAGAGAAACTGTGGCACTCCTTTGGCACTCCA
CTCCTCTTTTCCACCCTGTTGCCAATAATGACCTTTTAGTTAAGCTCTTC
CGTGCCTTGATGTTTCTGCAGGATAACATCGTCGGATGTAAGGGGTTTAT
CAGCATGCCGCTTGAGATCGGAGGAGTGGCGCTTGCTAACGTTTTCCACC
AGGTACTCAACGTTAGTCGTTTTAGTAAAACATCATGAGCTTGAAAGTTC
AAGGTTTTGACTTTTTTTAATAGTAATTTCTTCCACCCGTTTTTTTGTTT
AATTTTTGTTGAACTCTTTGTGGAGTTTATTCCAAAAGTTATTATCCCAA
ATCCGTCGTTTTCCAAAATTGGCTTAATTCCTTTGTCTCGACAGGTAAAA
GTTGCCATGGTGTCTACGGAAGCTGAGCGCATCTGCATCGATCGGATGGT
AAAGGGTCAGGAGAAACCTTTTGGCGTTCCGGAGGGGTTGGCAGAAGTCA
ACAGCAAAATGGCTAGCTTGGTAAGAATACTTTCTTGACGCCTAAACAAT
GCCTAACAAAACGTGGGTAAGAAGGTAGCGCGCCTGAAAGCTTTTTAGTA
GGGTTCTCATCGGTGTGAATCAATCAAGCAATCAATCGCGCAGGATAACC
TTGCTCACCAAAATATGTGAACTCAGTTACCAATTATCTAGTTCATCACA
TGGAGATGCCAAGTTATAACCAACCGAATGCCTATCCTAATTTTGCCACA
TCTCGGTGCACAGGAGACGTCTATGCAGCGGTTGCTGGGCATGTTACGTC
AGGCACAAGAGTACGTCACGACAGTTGTGGATGGCAAGTTGCCAGCAGAT
CCTCATATGGGACGAAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig12611:833..6703-

>mRNA_H-elongata_contig12611.1945.1 ID=mRNA_H-elongata_contig12611.1945.1|Name=mRNA_H-elongata_contig12611.1945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig12611:833..6703- (Himanthalia elongata Himel1 dioecious)
ATGATGTCCATGGGCGGAGGATCTGGCTCGATGCTCGTCTTGAACGACCC
CGCGGCAAAGATCTCCAGCTCAGAGAGTGCTGCCACCGCCACGCCCGTGG
TCAATCTCTCTGCGTTCGCCAGCCGTAACGACCTCGTCGTGAAGATGATG
TCCATGGGCGGAGGATCTGGCTCGATGCTCGTCTTGAACGACCCCGCGGC
AAAGATCTCCAGCTCAGAGAGTGCTGCCACCGCCACGCCCGTGGTCAATC
TCTCTGCGTTCGCCAGCCGTAACGACCTCGTCGTGAAGGTTCATCCGATG
GTACTGTTTTCTGTATTAGACCACTATCTCCGACGACCCGAGAACCAAAA
ACGCGTGATCGGAACACTTCTGGGAACAGTGTCCGCGAACGTGGTAGAGA
TCACGAACTCCTTCGCCGTGCCCCATTTAGAGAAGAACAACGAGGTTCAT
CCGATGGTACTGTTTTCTGTATTAGACCACTATCTCCGACGACCCGAGAA
CCAAAAACGCGTGATCGGAACACTTCTGGGAACAGTGTCCGCGAACGTGG
TAGAGATCACGAACTCCTTCGCCGTGCCCCATTTAGAGAAGAACAACGAG
GTGGCAGTTGGGAAGGACTTCAACAAGTCCATGTTGGCGTTGCAGCAGAG
GGTCAATAGCCGAGAATCCGTCGTGGGCTGGTGGCAGTTGGGAAGGACTT
CAACAAGTCCATGTTGGCGTTGCAGCAGAGGGTCAATAGCCGAGAATCCG
TCGTGGGCTGGTACGCGACTTCATTCGACGGTGTTTTGATCGTGGACGAT
TCTTCGCTCATCCATGATTTTTACACGGGAGAGTGCTCTCGACCAGTTCA
CCTTGTCGTCGATACCGCTATGAAGGTACGCGACTTCATTCGACGGTGTT
TTGATCGTGGACGATTCTTCGCTCATCCATGATTTTTACACGGGAGAGTG
CTCTCGACCAGTTCACCTTGTCGTCGATACCGCTATGAAGGATAACATCG
TCGGATGTAAGGGGTTTATCAGCATGCCGCTTGAGATCGGAGGAGTGGCG
CTTGCTAACGTTTTCCACCAGGATAACATCGTCGGATGTAAGGGGTTTAT
CAGCATGCCGCTTGAGATCGGAGGAGTGGCGCTTGCTAACGTTTTCCACC
AGGTAAAAGTTGCCATGGTGTCTACGGAAGCTGAGCGCATCTGCATCGAT
CGGATGGTAAAGGGTCAGGAGAAACCTTTTGGCGTTCCGGAGGGGTTGGC
AGAAGTCAACAGCAAAATGGCTAGCTTGGTAAAAGTTGCCATGGTGTCTA
CGGAAGCTGAGCGCATCTGCATCGATCGGATGGTAAAGGGTCAGGAGAAA
CCTTTTGGCGTTCCGGAGGGGTTGGCAGAAGTCAACAGCAAAATGGCTAG
CTTGGAGACGTCTATGCAGCGGTTGCTGGGCATGTTACGTCAGGCACAAG
AGTACGTCACGACAGTTGTGGATGGCAAGTTGCCAGCAGATCCTCATATG
GGACGAAAGGTGGAGACGTCTATGCAGCGGTTGCTGGGCATGTTACGTCA
GGCACAAGAGTACGTCACGACAGTTGTGGATGGCAAGTTGCCAGCAGATC
CTCATATGGGACGAAAGGTG
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