mRNA_H-elongata_contig126086.1941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126086.1941.1
Unique NamemRNA_H-elongata_contig126086.1941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Match: A0A6H5KAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.850e-59
Identity = 134/235 (57.02%), Postives = 154/235 (65.53%), Query Frame = 1 
Query:    1 ILCWRVGGXXXXXXXXXXXLFGGGGQDEKNFPAESATEQAVIRVAKAKGLSFTTVRVTKF-GDVRGAAASESPLPLITPKNAPRPTGG--SLPDASRSVAANALLRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPESRRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEG---GSGTFKAWSFLREWAQLWTKEGTGLTTRVRL 687
            ++C  VGG XXXXXXXXXX       ++K FPAES  EQAVIRVAKAKG+SFTTVRV+K   + RGA     P+PLI P+N+PR  GG  +LP ASRSVAAN + RASYQ                                        PE+RRNSTFAVSDFP S   WPVP+SGW DEF+KLTGPELLR+ IPA FEG   GSGTF AW+FLREWAQLWT+EGTGLTTRV++
Sbjct:  528 VVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPAESTAEQAVIRVAKAKGVSFTTVRVSKLLAEDRGAI---DPMPLIVPRNSPRADGGRSTLPAASRSVAANTIFRASYQ----------------------------------------PEARRNSTFAVSDFPTS---WPVPSSGWVDEFLKLTGPELLRIPIPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKV 716
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BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Match: D7FK21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK21_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.960e-53
Identity = 129/235 (54.89%), Postives = 152/235 (64.68%), Query Frame = 1 
Query:    1 ILCWRVGGXXXXXXXXXXXLFGGGGQDEKNFPAESATEQAVIRVAKAKGLSFTTVRVTKF-GDVRGAAASESPLPLITPKNAPRPTGGSL-PDASRSVAANAL-LRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPESRRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEG---GSGTFKAWSFLREWAQLWTKEGTGLTTRVRL 687
            ++C  VGG XXXXXXXXXX       ++K FP ES  EQ VI VAKAKG SFTTVRV+K  G  RGA     P+PLI P+N PR  G  + P AS +V      L+    V +S  V   V  T+++         K N         KKPE+RRNSTFAVSDFP S   WPVP+SGW DEF+KLTGPELLR+ +PA FEG   GSGTF AW+FLREWAQLWT+EGTGLTTRV++
Sbjct:  280 VVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVIPVAKAKGGSFTTVRVSKLLGQDRGAI---DPMPLIVPRNIPRADGRQVYPPASVAVRGGKHHLQGLLPVFSSSLVSAPVEKTWAKTRTGMYSRGKWNFFE------KKPEARRNSTFAVSDFPTS---WPVPSSGWVDEFLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKV 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAR2_9PHAE1.850e-5957.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK21_ECTSI6.960e-5354.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126086contigH-elongata_contig126086:3..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D7FK21
EggNOG OGs2E3JX@1,2SAMM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-18_002750.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126086.1941.1prot_H-elongata_contig126086.1941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126086 3..1458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.4702153-CDS-H-elongata_contig126086:2..1191622929746.4702153-CDS-H-elongata_contig126086:2..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 3..119 +
1691679141.5675912-CDS-H-elongata_contig126086:2..1191691679141.5675912-CDS-H-elongata_contig126086:2..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 3..119 +
1622929746.4828157-CDS-H-elongata_contig126086:395..6351622929746.4828157-CDS-H-elongata_contig126086:395..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 396..635 +
1691679141.5766473-CDS-H-elongata_contig126086:395..6351691679141.5766473-CDS-H-elongata_contig126086:395..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 396..635 +
1622929746.4941509-CDS-H-elongata_contig126086:1107..14581622929746.4941509-CDS-H-elongata_contig126086:1107..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 1108..1458 +
1691679141.5860288-CDS-H-elongata_contig126086:1107..14581691679141.5860288-CDS-H-elongata_contig126086:1107..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126086 1108..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126086.1941.1

>prot_H-elongata_contig126086.1941.1 ID=prot_H-elongata_contig126086.1941.1|Name=mRNA_H-elongata_contig126086.1941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
ILCWRVGGGGGGGGGVGVGLFGGGGQDEKNFPAESATEQAVIRVAKAKGL
SFTTVRVTKFGDVRGAAASESPLPLITPKNAPRPTGGSLPDASRSVAANA
LLRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPES
RRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEGGS
GTFKAWSFLREWAQLWTKEGTGLTTRVRLPLVVCF*
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mRNA from alignment at H-elongata_contig126086:3..1458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126086.1941.1 ID=mRNA_H-elongata_contig126086.1941.1|Name=mRNA_H-elongata_contig126086.1941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1456bp|location=Sequence derived from alignment at H-elongata_contig126086:3..1458+ (Himanthalia elongata Himel1 dioecious)
ATTTTGTGTTGGCGGGTGGGGGGGGGGGGGGGGGGGGGGGGTGGGGTCGG
AGTAGGGCTGTTTGGCGGAGGCGGGCAAGACGAGAAAAATTTTCCCGCGG
AGAGCGCGACCGAGCAGGTGGGTTTGCTTCTTTTTAACGCCTGGCTGGGC
GTGCAGCGTTAGCGGAAAGGAAAGATCGGGGAGAGTGGGTGGGGGGGGTT
AACATCCACGATCGTTGCTGTATTCATCGCGTGAGAGATAAGTTGCGATA
TCACCTCGCGTTGATGCCTGGTGCTTGTGGCTGTGGTTGTGTTTGTCGGT
GTGTGCGCGCGCGCTGAGAGCTGAGAGTAACATGTTTTCGAAACATTTCT
CATCCTCGCGCGCCGCACGGACCCGTCACCGAAACCCCACCAGGCCGTGA
TTCGCGTGGCGAAAGCAAAGGGCTTATCGTTCACCACCGTTCGAGTAACC
AAGTTCGGAGACGTCCGGGGCGCCGCCGCCTCTGAATCTCCGTTGCCCCT
CATCACCCCCAAGAACGCTCCGCGTCCGACTGGCGGCAGTCTTCCCGACG
CATCCCGCTCCGTCGCGGCGAACGCCTTGCTCAGGGCATCCTACCAGGTG
CTTGCTTCTGAGACGGTCTTCCCTCTGGTGACAGTCTCCGGTGGCGGGGA
CGTGTCGGGCCTCCCTCTTCATACCCATGCTCTTATTTTGAAATGTTCAA
CGTTTAGGCGGGCCGGTGTGTGTCTATGATTAACCTAGTTCCGAGTTCAG
AAGAGTAGATGTCGAACACGATTTATTTCACCAGGAGACTAACTAAATAT
GTCCTTGGCAGAGGGGCTGAATTTGATATTGTCTTCGCAATCGGAACCTG
GAAATGGACTGATTTTACCTCCCCCCCCCGCCCGATCATTGAATCCATAT
TTTTGTTGTAGAGAGTCATGACGCCATAAGGGACGCGACGCGAGAGCGCG
CCGACCTCTAGTATAAGTAGCGGATGTGTTTGTGGTATGTTCCCGAGACT
TCGCGGAAGAAGGAGGGAGTCTGGCGCTCGCTCGACCGGGGTTTTTCCCA
ACGAGTCGGCTTCCCTTGTATGTTACTCCGCGGAAGGAAAATTGATCCAG
CTGAGATAACGTTTTCTCGCCTCCTCCAACCCCCGCTTCCCTTTACGAAA
AATAATGTCCTTCCTCCCCTACCCCCCACCCCCAAAAAGCCGGAATCACG
GCGAAACTCCACGTTTGCCGTGTCAGACTTCCCGGTAAGCTCGCCCTCGT
GGCCAGTGCCCGCCAGCGGTTGGACGGACGAGTTCGTGAAGCTGACGGGG
CCGGAGCTGCTGCGGGTCGCCATACCAGCGGAGTTCGAGGGGGGATCGGG
CACGTTCAAGGCGTGGTCGTTCTTAAGGGAGTGGGCGCAGCTCTGGACGA
AGGAGGGCACAGGACTTACTACTCGAGTGCGTCTGCCGTTAGTGGTTTGC
TTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig126086:3..1458+

>mRNA_H-elongata_contig126086.1941.1 ID=mRNA_H-elongata_contig126086.1941.1|Name=mRNA_H-elongata_contig126086.1941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig126086:3..1458+ (Himanthalia elongata Himel1 dioecious)
ATTTTGTGTTGGCGGGTGGGGGGGGGGGGGGGGGGGGGGGGTGGGGTCGG
AGTAGGGCTGTTTGGCGGAGGCGGGCAAGACGAGAAAAATTTTCCCGCGG
AGAGCGCGACCGAGCAGATTTTGTGTTGGCGGGTGGGGGGGGGGGGGGGG
GGGGGGGGTGGGGTCGGAGTAGGGCTGTTTGGCGGAGGCGGGCAAGACGA
GAAAAATTTTCCCGCGGAGAGCGCGACCGAGCAGGCCGTGATTCGCGTGG
CGAAAGCAAAGGGCTTATCGTTCACCACCGTTCGAGTAACCAAGTTCGGA
GACGTCCGGGGCGCCGCCGCCTCTGAATCTCCGTTGCCCCTCATCACCCC
CAAGAACGCTCCGCGTCCGACTGGCGGCAGTCTTCCCGACGCATCCCGCT
CCGTCGCGGCGAACGCCTTGCTCAGGGCATCCTACCAGGTGCTTGCTTCT
GAGACGGTCTTCCCTCTGGTGACAGCCGTGATTCGCGTGGCGAAAGCAAA
GGGCTTATCGTTCACCACCGTTCGAGTAACCAAGTTCGGAGACGTCCGGG
GCGCCGCCGCCTCTGAATCTCCGTTGCCCCTCATCACCCCCAAGAACGCT
CCGCGTCCGACTGGCGGCAGTCTTCCCGACGCATCCCGCTCCGTCGCGGC
GAACGCCTTGCTCAGGGCATCCTACCAGGTGCTTGCTTCTGAGACGGTCT
TCCCTCTGGTGACAATAACGTTTTCTCGCCTCCTCCAACCCCCGCTTCCC
TTTACGAAAAATAATGTCCTTCCTCCCCTACCCCCCACCCCCAAAAAGCC
GGAATCACGGCGAAACTCCACGTTTGCCGTGTCAGACTTCCCGGTAAGCT
CGCCCTCGTGGCCAGTGCCCGCCAGCGGTTGGACGGACGAGTTCGTGAAG
CTGACGGGGCCGGAGCTGCTGCGGGTCGCCATACCAGCGGAGTTCGAGGG
GGGATCGGGCACGTTCAAGGCGTGGTCGTTCTTAAGGGAGTGGGCGCAGC
TCTGGACGAAGGAGGGCACAGGACTTACTACTCGAGTGCGTCTGCCGTTA
GTGGTTTGCTTTTAGATAACGTTTTCTCGCCTCCTCCAACCCCCGCTTCC
CTTTACGAAAAATAATGTCCTTCCTCCCCTACCCCCCACCCCCAAAAAGC
CGGAATCACGGCGAAACTCCACGTTTGCCGTGTCAGACTTCCCGGTAAGC
TCGCCCTCGTGGCCAGTGCCCGCCAGCGGTTGGACGGACGAGTTCGTGAA
GCTGACGGGGCCGGAGCTGCTGCGGGTCGCCATACCAGCGGAGTTCGAGG
GGGGATCGGGCACGTTCAAGGCGTGGTCGTTCTTAAGGGAGTGGGCGCAG
CTCTGGACGAAGGAGGGCACAGGACTTACTACTCGAGTGCGTCTGCCGTT
AGTGGTTTGCTTTTAG
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