mRNA_H-elongata_contig12608.1940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12608.1940.1
Unique NamemRNA_H-elongata_contig12608.1940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 702 bits (1812), Expect = 9.750e-240
Identity = 402/722 (55.68%), Postives = 469/722 (64.96%), Query Frame = 1
Query:    1 LPSAMEAYTRAVARRCLKMQGRPASDIGVAGLLADAYEANISPEQRSGKRKMCFRLLLLVLNSRLGALIFTGRAVPISSQDLASRHTLLKQWSTSRVSKLREAFQGIKRLASSLYFSAHPEV-------VSMECLTATAAATMKTNPNWEDIRYDPQHHSIARDGL------------LGEAAVVPEFGQRSDAKDKCIQTAKAATGIISPSFR-----------EPDSPTDFSPTCVSATGPSA----------------SRVSSLAEGVDGGHAEGVVVGSGSVGPRGSEGQTPVASTEAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAP-ASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAK----------VSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYVQDLMGLDGGYGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            LP  +EAYTR + RRCL M GR  SD+GVA LLA A+E NIS E+RSG      R+L  VL++RLGA + TGRAVP  SQ LA+RH +LK+WS SR+  LR+AFQG+KRL  SL+FSAHPEV             +  A A +KTNPNW DIRYDPQHH  ARD              +  AAV P     +  KD+  QTA+AA  + S + R            P SP    P   SAT  +A                SR  S + G     A   +  SG+    GS    P +  E  P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY  +DFA FSEMEAY+ +YE QGVL +   ++V+LAGSCVGGGTTVN AASFRTP RHVRLEW +K+ LKSFEPGGPFD ALD VC RL VN   SHRAPG P P ASL+VNQHQ+SLWNGA ASGR P+AVP N KDCVDCGSC+HGCA+G+K+STHVTWLQDGLDSGNIIL+P+AK   +L+D G+ATGV A V+ H    G      L V+ RAVVVSGGAI+TPA+LLRSGLKHP IGRHL LHPVL  GGVFPEDY  +G     +D    S   S A AA T G + K+             V SGE +         G  PR+P  G GVMMG YVQDLM LDGGYGCVIEAPPSHPGL GLV+PWND L+HR
Sbjct:   99 LPVKVEAYTRTLVRRCLAMYGRSGSDVGVAVLLAQAFEINISEEERSG-----LRVLFRVLSTRLGAFVLTGRAVPFQSQSLAARHGVLKRWSVSRIRPLRDAFQGVKRLTCSLFFSAHPEVHHKPSHPEGSGAESTAALAKIKTNPNWIDIRYDPQHHRFARDETPAVSSAGQRPDPIAAAAVRPGLWSGAKVKDRVSQTARAAAAVASTAPRPSTSLSANSHSNPPSPASSLPPSFSATAAAAPPSRVPAPEDVPPKFFSRPRSKSSGSAAATAGAFLPSSGTTS--GSASAAPTSPHETLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAHDFARFSEMEAYKDMYEGQGVLATEGGAVVILAGSCVGGGTTVNWAASFRTP-RHVRLEWSRKLGLKSFEPGGPFDDALDAVCSRLGVNIGNSHRAPGFPVPNASLRVNQHQSSLWNGAAASGRVPRAVPTNTKDCVDCGSCLHGCAYGSKQSTHVTWLQDGLDSGNIILVPHAKVERVLMDAGRATGVEAVVSPH----GGGMAASLTVRARAVVVSGGAINTPAILLRSGLKHPMIGRHLCLHPVLAVGGVFPEDY--DGEHGAGEDDPKRSTGGSMAAAAGTAGKQAKSXXXXXXXXXXXXXVGSGEGTN--------GSCPRVPGVGRGVMMGVYVQDLMRLDGGYGCVIEAPPSHPGLMGLVMPWNDALTHR 798          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 551 bits (1420), Expect = 3.170e-184
Identity = 329/636 (51.73%), Postives = 390/636 (61.32%), Query Frame = 1
Query:    1 LPSAMEAYTRAVARRCLKMQGRPASDIGVAGLLADAYEANISPEQRSGKRKMCFRLLLLVLNSRLGALIFTGRAVPISSQDLASRHTLLKQWSTSRVSKLREAFQGIKRLASSLYFSAHPEV-------VSMECLTATAAATMKTNPNWEDIRYDPQHHSIARDGL------------LGEAAVVPEFGQRSDAKDKCIQTAKAATGIISPSFR-----------EPDSPTDFSPTCVSATGPSA----------------SRVSSLAEGVDGGHAEGVVVGSGSVGPRGSEGQTPVASTEAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAP-ASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGK 1767
            LP  +EAYTR + RRCL M GR  SD+GVA LLA A+E NIS E+R G      R+L  +L++RLGA I TGRAVP  SQ LA+RH +LK+WS SR+  LR+AFQG+KRL  SL+FSAHPEV                A A +KTNPNW DIRYDPQHH  AR+ +            +G AA  P     +  K++   TA+AA                     P SP    P    AT  +A                +R  S + G     A   +  SG+   R S    P+   E  P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY   DFA FSEMEAY+ +YE QGVL +   ++V+LAGSCVGGGTTVN AASFRTP RHVRLEW +K+ LKSFEPGGP D ALD VC RL VN   SHRAPG P P ASL+VNQHQ+SLWNGA ASGR P+AVP N K+CVDCGSC+HGCA+G+K+STHV                      +L+D G+ATGV A VT H    G  K  PL V+ RAVVVSGGAI+TPA+LLRSGLKHP IGRHL LHPVL  GGVFPEDY  +G     +D    S   S A AA T G + +
Sbjct:  191 LPVKVEAYTRTLVRRCLAMHGRSGSDVGVAILLAQAFEINISEEERLG-----LRVLFRMLSTRLGAFILTGRAVPFHSQSLAARHGVLKRWSVSRIRPLRDAFQGVKRLTCSLFFSAHPEVHRKPSHPEESGAEWTAALAKIKTNPNWIDIRYDPQHHRFARNEIPVLSSTGQRLNPIGAAAARPGLWSGAKVKERVSLTARAAXXXXXXXXXXXXXXXXXXXXNPPSPASSLPPSFPATAAAAPPSRVPAPEDVLPKFFTRPRSKSSGSAAATAGAFLPSSGTTSGRASA--VPIPPHEPLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAPDFAGFSEMEAYKDMYEGQGVLATEGGAVVILAGSCVGGGTTVNWAASFRTP-RHVRLEWSRKLGLKSFEPGGPLDNALDAVCSRLGVNIGNSHRAPGFPVPNASLRVNQHQSSLWNGAAASGRVPRAVPTNTKECVDCGSCLHGCAYGSKQSTHV--------------------ERVLMDAGRATGVEAVVTPH----GGGKAAPLTVRARAVVVSGGAINTPAILLRSGLKHPMIGRHLCLHPVLAVGGVFPEDY--DGGHGAGEDDPKRSTGGSMAVAAGTAGKQAR 792          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: W7T4J7_9STRA (Long-chain-alcohol oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J7_9STRA)

HSP 1 Score: 281 bits (718), Expect = 6.140e-80
Identity = 224/672 (33.33%), Postives = 292/672 (43.45%), Query Frame = 1
Query:   64 RPASDIGVAGLLADAYEANISPEQRSGKRKMCFRLLLLVLNSRLGALIFTGRA-----VPISSQDLASRHTLLKQWSTSRVSKLREAFQGIKRLASSLYFSAHPEVVSMECLTATAAATMKTNPNWEDIRYDPQHHSIARDGLLGEAAVVPEFGQRSDAKDKCIQTAKAATGIISPSFREPDSPTDFSPTCVSATGPSASRVSSLAEGVDGGHAEGVVVGSGSVGPRGSEGQTPVASTEAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLI-DGGKATGVTATV-------------------TTHDCGYGDDKVTPLEVQGR-AVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYVQDLMG--LDGGYGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            R A D  V   + D  E ++ P+ R        R++L  L   LG    TG          SS     R  +  +  TS +  +R     IK +A  +YF+A     S      T   T  TNP+W  + Y  +     R  + G+    P+                     + P  R+        P+CV                                      G T V        +L  DVV++GSGAGGG AAGVL + GLKV VLEKGG Y + DFA F E+++ R L ER G + + + S+ +LAGSCVGGGTT+N  ASFRTP  HVR EWV K  L  F  G  +D+ALD V +RL +NT +SHR P   +  SL VNQ+   LW GA A G     VPRN + C DC  C  GC +G K+ST  T+L+D  ++GN  L+  A    +L  D   A GV ATV                   + H  G        L V    AV++S G++H+PAVLLRSGLKH KIGRHL LHPV    G+FP +           DT                                    +L              GV MGTYV D MG  +  G+G  IE PPSH GL G++ P+    ++R
Sbjct:  114 RGALDADVPARVGDIVEEDLRPDARK-----IVRMVLYALEMPLGLFFLTGGTWYGWGTGFSSMPFRQREAVFGRLLTSIIEPIRGLAILIKAMAGRIYFAARDTPPS------TPGGT-PTNPSWTALGYQDRTRDRVRSVMGGKPLRKPQ---------------------LHPLRRD-----SIPPSCVG-------------------------------------GGTDV-------RELSCDVVIVGSGAGGGTAAGVLTAAGLKVVVLEKGGYYSEEDFAGFGELDSERALCERSGWMGAQELSVSILAGSCVGGGTTLNWCASFRTPE-HVRREWVDKHGLTCFG-GAEYDQALDAVARRLNLNTRHSHRNPEVASVPSLVVNQNNERLWQGAKAVGARCLPVPRNVRGCEDCSGCERGCPYGAKQSTLRTFLEDAENTGNFKLVARAHVDKVLRNDDNDAVGVIATVHEERRLAEGRESDGEGRPPSGHRPGPSTSSRYQLIVWAHHAVILSAGSLHSPAVLLRSGLKHHKIGRHLALHPVSGVAGLFPSET---------SDT------------------------------------HL--------------GVGMGTYVSDFMGGEMKDGWGGAIETPPSHAGLAGVIAPYGTAFNYR 642          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A7S0SPC3_9STRA (Long-chain-alcohol oxidase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SPC3_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.330e-76
Identity = 161/411 (39.17%), Postives = 222/411 (54.01%), Query Frame = 1
Query:  787 VDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGL-DSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQG-----RAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYVQ--DLMGLDGGYGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            VDVVV+GSG+GGG  +  LA  GL V +LEKG  YD  DF+ + E EA+ + +ER G+L S D S+ +LA S VGGG+T+N +ASF+TP+ HV  +W + + L  F+ GG F+K+L  VC RL VN   S+         +  VN +   LW GAV  G +P+ +PRN K+CVDCG C +GC +  K+ST    +   L    N+ +I N + + ++I+GG ATG+   V T+    G  + +PL V+      + VV S G++HTPA+LLRSGL HP IGRHL LHPV+  GGVFP+                                                       G+S       +GV MG  V+  D    + GYG VI+ PP HPG+  L +PWNDGLS++
Sbjct:  185 VDVVVVGSGSGGGIVSSKLAEHGLSVLLLEKGSYYDAKDFSQWRESEAFSKAFERGGLLTSEDGSIAVLAASTVGGGSTINWSASFKTPA-HVLKDW-ELLGLSIFKTGGEFEKSLSNVCNRLGVNDRCSYHHKHEVDNHNYVVNNNNRLLWEGAVKLGYSPEKIPRNVKNCVDCGHCCYGCPYLAKQSTLTNSIAPLLLKKDNLRVISNCRVNKVIIEGGIATGIQGQVFTYPTTEGPIRPSPLSVRNIIVKAKIVVSSCGSLHTPALLLRSGLTHPLIGRHLALHPVVGVGGVFPD----------------------------------------------------LSTGLS-------TGVSMGVVVKSTDFDSKEKGYGIVIQTPPVHPGVLALAMPWNDGLSYK 534          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A7R9YDU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU7_9STRA)

HSP 1 Score: 261 bits (668), Expect = 8.350e-75
Identity = 208/650 (32.00%), Postives = 291/650 (44.77%), Query Frame = 1
Query:   64 RPASDIGVAGLLADAYEANISPEQRSGKRKMCFRLLLLVLNSRLGALIFTGRAVPISSQDLASRHTLLKQWSTSRVSKLREAFQGIKRLASSLYFSA-HPEVVSMECLTATAAATMKTNPNWEDIRYDPQHHSIARDGLLGEAAVVPEFGQRSDAKDKCIQTAKAATGIISPSFREPDSPTDFSPTCVSATGPSASRVSSLAEGVDGGHAEGVVVGSGSVGPRGSEGQTPVASTEAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAP---GCPAPASLK--VNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDG-GKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYVQD-LMGLDG-GYGCVIEAPPSHPGLTGLVLPWNDGL 1986
            R ASD+ VA   A A + +  P  R     +  R++L +L++RLG  +F    +       A+RH +L++W+ S +  LR+ FQ +KRL  SL+  A  P+   +             NPNW+ + Y P+  +    G    AA+        DA   C+              REP                                                           PP+    DVV++GSGAGGG AA VL  KG +VAV+EKG  + + +FA +SEM+A+   +E  G+L + D S+ ++AGSCVGGGTT+N +ASFR P  HVR EW++   +         D +   V K + +NT  +HR     GC    SL   VN++   L  GA + G   +AVPRN K CVDCGSC  GCA+G K+ T +  L+D   +G + LIPN     +  D  G+ATGV   V   D G  +     L +   AV+++ G+I+TP +L RSGL+H  +GR+L LHPV    GVF      EG ++  +DTG                                                   GV MGTYV D  +  DG GYG V E PP HP L  + +PW   L
Sbjct:   50 RSASDVDVARHFAIATQRHGKPADR-----VALRVVLRLLDTRLGGWLFGAGFIRFKDATFAARHRMLERWAASPLPVLRQLFQSLKRLGCSLFLGAPFPDDGGVR------------NPNWDILDYTPRCEAA---GTQRRAALAE---MEDDALKACVP-------------REP--------------------------------------------------------LRVPPAPKPYDVVIVGSGAGGGVAASVLTQKGFRVAVVEKGQHFGETNFAQWSEMQAFENAFEDGGLLTNGDKSISVMAGSCVGGGTTINWSASFRLPP-HVRREWIRNFGIDWLAED--LDASFAEVSKMMNINTAETHRHEKLHGCTDSPSLDHAVNKNNDFLVEGAYSLGMKCRAVPRNVKGCVDCGSCNFGCAYGAKQGT-LKILRDAARTGLLTLIPNTTVDAVQRDRTGRATGVKC-VREADGGARES----LFLSAHAVIIAAGSINTPKILARSGLRHSSLGRNLSLHPVACVVGVF------EGGASEAEDTG------------------------------------------------LDHGVSMGTYVCDGNVDFDGTGYGVVPETPPVHPLLLAIGMPWKSAL 544          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: K8YNZ6_NANGC (Glucose-methanol-choline oxidoreductase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNZ6_NANGC)

HSP 1 Score: 227 bits (579), Expect = 2.080e-65
Identity = 132/287 (45.99%), Postives = 166/287 (57.84%), Query Frame = 1
Query:  868 VLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLI-DGGKATGVTATV-------------------TTHDCGYGDDKVTPLEVQG-RAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPED 1665
            VLEKGG Y + DFA F E+++ R L ER G + + + S+ +LAGSCVGGGTT+N  ASFRTP  HVR EWV K  L  F  G  +D+ALD V +RL +NT +SHR P   +  SL VNQ+   LW GA A G     VPRN + C DC  C  GC +G K+ST  T+L+D  ++GN  L+  A    +L  D   A GV ATV                   + H  G        L V    AV++S G++H+PAVLLRSGLKH KIGRHL LHPV    G+FP +
Sbjct:    1 VLEKGGYYSEEDFAGFGELDSERALCERSGWMGAQELSVSILAGSCVGGGTTLNWCASFRTPE-HVRREWVDKHGLTCFG-GAEYDQALDAVARRLNLNTRHSHRNPEVASVPSLVVNQNNERLWQGAKAVGARCLPVPRNVRGCQDCSGCERGCPYGAKQSTLRTFLEDAENTGNFKLVARAHVDKVLRNDDNDAVGVIATVHEERRLAEGRESDGEGRPPSGHRPGPSTSSRYQLIVWADHAVILSAGSLHSPAVLLRSGLKHHKIGRHLALHPVSGVAGLFPSE 285          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A7S1UJN9_9STRA (Long-chain-alcohol oxidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN9_9STRA)

HSP 1 Score: 239 bits (611), Expect = 4.630e-65
Identity = 160/408 (39.22%), Postives = 210/408 (51.47%), Query Frame = 1
Query:  790 DVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHR---APGCPAPASLK---VNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDG-GKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYV-QDLMGLDG-GYGCVIEAPPSHPGLTGLVLPWNDGL 1986
            DV+V+GS      AA VLA++GL+VAVLEKGG + + DFAA++E +AY   YE   +L + D+S+ +LAG+CVGGGTT+N  ASFR P  HV  EW +   L     G   + +LD VC +L V T ++HR      C A    +   VN     L  GA A G   +AVPRN K CVDCGSC HGC +G K+ T V  L++  ++G + L P     ++  +  G ATGV A     D G GD    PL ++ RAV+VS G+++TP VL RSGL+HP IGRHL LHPV    G F  +     R+  P +T                                                    GV MGT V ++ +  DG GYG V E PP HP + GL +PW   L
Sbjct:  291 DVIVVGSXXXXXTAASVLAARGLRVAVLEKGGHFTEEDFAAWTEAQAYEHAYENAALLANKDASITVLAGACVGGGTTINWCASFRPPP-HVLKEWARDFGLGDGLAG--LEASLDAVCAKLGVGTRFTHRHEHLSDCAAAQQSQAHVVNAANDFLVEGAHALGMPCRAVPRNVKGCVDCGSCSHGCVYGAKQGTLVL-LREAAETGRLALYPRTTVDYVTRNAAGAATGVHAL--REDDGGGD--AVPLRLRARAVIVSAGSVNTPKVLGRSGLRHPVIGRHLTLHPVTCVTGSFDRE-----RNGKPTNT------------------------------------------------AMDRGVSMGTCVREENIDFDGQGYGVVPETPPVHPFILGLGVPWKTAL 637          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A3M1N6W4_9CHLR (Long-chain-alcohol oxidase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1N6W4_9CHLR)

HSP 1 Score: 229 bits (583), Expect = 2.610e-62
Identity = 158/407 (38.82%), Postives = 199/407 (48.89%), Query Frame = 1
Query:  781 LVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFG-SGVMMGTYVQDLMGLDG-GYGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            L  DVV++GSGAGGG  A  L++ GL V VLEKGG Y + DF  + E+ +  R++E+ G +VS D  +++LAGS +GGGTTVN AA+ RTP   V  EW Q   +   +  G F++ALD V  RL V  + S       AP     N     L  GA A G T K +PRN K C DCG+C  GCA G K+ T  T+L+D     N  L   A    +LI+ G A GV  TV +            L V+ RAV V GGA+HTPA+LLRSGL +  IGR+L LHP   A G + E                                                             P+ G SGVMM  YV     LDG GYG  +E+ P HPGL  + LPW DGL H+
Sbjct:  170 LETDVVIVGSGAGGGVLAAELSAAGLDVIVLEKGGYYAEPDFDGY-EVRSQERMFEKGGFMVSEDLGMMILAGSTLGGGTTVNWAAALRTPEA-VLAEWAQHYGVDFTD--GTFERALDAVSARLHVTEEES-------AP-----NARNAVLVRGAQALGYTVKVIPRNVKGCADCGACGFGCAHGAKQGTLKTYLRDACRY-NTRLAVGAHVDRVLIEDGAACGVQGTVQSVS-----GAPVRLTVRARAVAVCGGALHTPALLLRSGLTNAHIGRNLHLHPSTGAFGFYAE-------------------------------------------------------------PINGWSGVMMSHYVPQFNNLDGRGYGVTLESAPGHPGLAAVALPWQDGLQHK 493          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: A0A7C4LBQ9_9CHLR (Long-chain-alcohol oxidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4LBQ9_9CHLR)

HSP 1 Score: 223 bits (569), Expect = 2.410e-60
Identity = 163/427 (38.17%), Postives = 206/427 (48.24%), Query Frame = 1
Query:  727 RGSEGQTPVASTEAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCV---DCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFGSGVMMGTYVQDLMGLDGG-YGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            RG   + P+    A  + L  DVVV+GSGAGGG AA  LA  G  V VLEKGG Y + DF A  E  AY+RLYE Q VL + D  +V+LAGS +GGGT VN  ASFRTP  HVR  W ++        G  F  +LD VC RL VNT+ S       A A  ++      L     A G     +P N + C     CG C  GCA G K+ST  T+L+D   +G  I++  A+A  +LI+ G+A GV A   T  C         L V+ RAVV + GA+HTPA+LLRSGL++P +GRHL LHP     G++P+                                                   L +P   P         M+  YV     LDG  YG V+E PP+HPGL GL L W  G  H+
Sbjct:  151 RGGGSRLPILPVTAD-ATLACDVVVVGSGAGGGVAAAELARAGCDVIVLEKGGYYAEEDFDAV-EFNAYQRLYENQAVLATRDLGVVVLAGSALGGGTVVNWGASFRTPD-HVREAWEREHACAGLA-GPEFTASLDAVCARLGVNTEESW------ASAEARL------LERACDALGLGCGVIPVNLRGCAAPETCGWCTFGCARGAKQSTARTYLRDAAQAGARIVV-GAEARRVLIEAGRAVGVEAVAGT--C--------TLTVRARAVVSAAGALHTPALLLRSGLQNPNLGRHLRLHPTAAVLGLYPD---------------------------------------------------LVEPWRGP---------MLTRYVNQWADLDGRHYGVVVEHPPAHPGLIGLALDWRSGAQHK 490          
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Match: UPI001ACA6ED4 (Putative GMC-type oxidoreductase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACA6ED4)

HSP 1 Score: 223 bits (568), Expect = 3.100e-60
Identity = 149/407 (36.61%), Postives = 195/407 (47.91%), Query Frame = 1
Query:  781 LVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRHVRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASLKVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHVTWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVTPLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPEDYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAGNLKQPGISPRIPVFG-SGVMMGTYVQDLMGLDG-GYGCVIEAPPSHPGLTGLVLPWNDGLSHR 1995
            L+ DVV++GSGAGGG  AG L++ GL V V+EKGG Y + DF   SE+ A +RL ER G LV+ D S+++LAG  +GGGT +N  AS RTP+  V  EW  +  +  F  G  +  ++D V  RL V              A  + N+    L  GA A G   K +PRN   C DCG C  GC  G K+S   T+LQD    G   LI +A+   +LI+ G+A GV A   T        ++    V+ + V+ + GAIHTPA+LLRSGL +  IGR+L LHP     G F E                                                             P+ G  GVMM  YV +   LDG GYG  +E+ P HPGLT +  PW DGL H+
Sbjct:  164 LLADVVIVGSGAGGGVLAGELSAAGLDVVVIEKGGYYAEGDFNG-SELHAQQRLLERGGFLVTDDLSMLILAGKALGGGTVINWTASLRTPNI-VLDEWEAEYGVTGFT-GREYQASMDAVSSRLHVTE------------AESEANRRNQVLVRGAAALGYAAKTIPRNVLGCKDCGFCCFGCPHGAKQSATRTYLQDAYTHG-ARLITHAEVDRVLIENGRAVGVEARART-----AQGQMVNFRVRSKTVIAAAGAIHTPALLLRSGLSNTHIGRNLHLHPSSGTFGFFEE-------------------------------------------------------------PINGWEGVMMSHYVSEFNNLDGRGYGVTLESAPGHPGLTAISFPWMDGLQHK 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12608.1940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5T1_ECTSI9.750e-24055.68Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JQQ5_9PHAE3.170e-18451.734Fe-4S ferredoxin-type domain-containing protein n... [more]
W7T4J7_9STRA6.140e-8033.33Long-chain-alcohol oxidase n=2 Tax=Monodopsidaceae... [more]
A0A7S0SPC3_9STRA2.330e-7639.17Long-chain-alcohol oxidase n=1 Tax=Chromulina nebu... [more]
A0A7R9YDU7_9STRA8.350e-7532.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K8YNZ6_NANGC2.080e-6545.99Glucose-methanol-choline oxidoreductase (Fragment)... [more]
A0A7S1UJN9_9STRA4.630e-6539.22Long-chain-alcohol oxidase n=1 Tax=Phaeomonas parv... [more]
A0A3M1N6W4_9CHLR2.610e-6238.82Long-chain-alcohol oxidase n=2 Tax=Chloroflexi Tax... [more]
A0A7C4LBQ9_9CHLR2.410e-6038.17Long-chain-alcohol oxidase n=1 Tax=Chloroflexi bac... [more]
UPI001ACA6ED43.100e-6036.61Putative GMC-type oxidoreductase n=1 Tax=Anaerolin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12608contigH-elongata_contig12608:1112..8273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score711.8
Seed ortholog evalue2.9e-202
Seed eggNOG ortholog2880.D7G5T1
KEGG koko:K17756
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114
EggNOG free text desc.long-chain-alcohol oxidase activity
EggNOG OGs2QSD8@2759,COG2303@1
EC1.1.3.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons12
Model size1998
Cds size1986
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.1205533-UTR-H-elongata_contig12608:1111..11231622929746.1205533-UTR-H-elongata_contig12608:1111..1123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12608 1112..1123 +
1691679141.4302566-UTR-H-elongata_contig12608:1111..11231691679141.4302566-UTR-H-elongata_contig12608:1111..1123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12608 1112..1123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.139292-CDS-H-elongata_contig12608:1123..12681622929746.139292-CDS-H-elongata_contig12608:1123..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 1124..1268 +
1691679141.4502983-CDS-H-elongata_contig12608:1123..12681691679141.4502983-CDS-H-elongata_contig12608:1123..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 1124..1268 +
1622929746.2491114-CDS-H-elongata_contig12608:2068..22261622929746.2491114-CDS-H-elongata_contig12608:2068..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 2069..2226 +
1691679141.4621167-CDS-H-elongata_contig12608:2068..22261691679141.4621167-CDS-H-elongata_contig12608:2068..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 2069..2226 +
1622929746.2683215-CDS-H-elongata_contig12608:2621..28341622929746.2683215-CDS-H-elongata_contig12608:2621..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 2622..2834 +
1691679141.4733653-CDS-H-elongata_contig12608:2621..28341691679141.4733653-CDS-H-elongata_contig12608:2621..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 2622..2834 +
1622929746.2820265-CDS-H-elongata_contig12608:3057..34831622929746.2820265-CDS-H-elongata_contig12608:3057..3483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 3058..3483 +
1691679141.48299-CDS-H-elongata_contig12608:3057..34831691679141.48299-CDS-H-elongata_contig12608:3057..3483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 3058..3483 +
1622929746.2966847-CDS-H-elongata_contig12608:3839..39401622929746.2966847-CDS-H-elongata_contig12608:3839..3940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 3840..3940 +
1691679141.4941268-CDS-H-elongata_contig12608:3839..39401691679141.4941268-CDS-H-elongata_contig12608:3839..3940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 3840..3940 +
1622929746.3109741-CDS-H-elongata_contig12608:4070..41731622929746.3109741-CDS-H-elongata_contig12608:4070..4173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 4071..4173 +
1691679141.5040681-CDS-H-elongata_contig12608:4070..41731691679141.5040681-CDS-H-elongata_contig12608:4070..4173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 4071..4173 +
1622929746.3231325-CDS-H-elongata_contig12608:5636..58371622929746.3231325-CDS-H-elongata_contig12608:5636..5837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 5637..5837 +
1691679141.512855-CDS-H-elongata_contig12608:5636..58371691679141.512855-CDS-H-elongata_contig12608:5636..5837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 5637..5837 +
1622929746.3335528-CDS-H-elongata_contig12608:6330..64001622929746.3335528-CDS-H-elongata_contig12608:6330..6400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 6331..6400 +
1691679141.5202982-CDS-H-elongata_contig12608:6330..64001691679141.5202982-CDS-H-elongata_contig12608:6330..6400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 6331..6400 +
1622929746.34578-CDS-H-elongata_contig12608:6819..68961622929746.34578-CDS-H-elongata_contig12608:6819..6896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 6820..6896 +
1691679141.528528-CDS-H-elongata_contig12608:6819..68961691679141.528528-CDS-H-elongata_contig12608:6819..6896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 6820..6896 +
1622929746.3829455-CDS-H-elongata_contig12608:7177..74321622929746.3829455-CDS-H-elongata_contig12608:7177..7432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 7178..7432 +
1691679141.5369718-CDS-H-elongata_contig12608:7177..74321691679141.5369718-CDS-H-elongata_contig12608:7177..7432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 7178..7432 +
1622929746.3991396-CDS-H-elongata_contig12608:7702..78501622929746.3991396-CDS-H-elongata_contig12608:7702..7850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 7703..7850 +
1691679141.546287-CDS-H-elongata_contig12608:7702..78501691679141.546287-CDS-H-elongata_contig12608:7702..7850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 7703..7850 +
1622929746.4154685-CDS-H-elongata_contig12608:8184..82731622929746.4154685-CDS-H-elongata_contig12608:8184..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 8185..8273 +
1691679141.5555007-CDS-H-elongata_contig12608:8184..82731691679141.5555007-CDS-H-elongata_contig12608:8184..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12608 8185..8273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12608.1940.1prot_H-elongata_contig12608.1940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12608 1124..8273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12608.1940.1

>prot_H-elongata_contig12608.1940.1 ID=prot_H-elongata_contig12608.1940.1|Name=mRNA_H-elongata_contig12608.1940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=662bp
MEAYTRAVARRCLKMQGRPASDIGVAGLLADAYEANISPEQRSGKRKMCF
RLLLLVLNSRLGALIFTGRAVPISSQDLASRHTLLKQWSTSRVSKLREAF
QGIKRLASSLYFSAHPEVVSMECLTATAAATMKTNPNWEDIRYDPQHHSI
ARDGLLGEAAVVPEFGQRSDAKDKCIQTAKAATGIISPSFREPDSPTDFS
PTCVSATGPSASRVSSLAEGVDGGHAEGVVVGSGSVGPRGSEGQTPVAST
EAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAA
FSEMEAYRRLYERQGVLVSTDSSLVLLAGSCVGGGTTVNCAASFRTPSRH
VRLEWVQKMNLKSFEPGGPFDKALDVVCKRLEVNTDYSHRAPGCPAPASL
KVNQHQTSLWNGAVASGRTPKAVPRNAKDCVDCGSCVHGCAFGNKRSTHV
TWLQDGLDSGNIILIPNAKASHLLIDGGKATGVTATVTTHDCGYGDDKVT
PLEVQGRAVVVSGGAIHTPAVLLRSGLKHPKIGRHLGLHPVLLAGGVFPE
DYRIEGRSATPQDTGGASDAASPAEAAATIGIEGKTEAKVSSGERSKAAG
NLKQPGISPRIPVFGSGVMMGTYVQDLMGLDGGYGCVIEAPPSHPGLTGL
VLPWNDGLSHR*
back to top

mRNA from alignment at H-elongata_contig12608:1112..8273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12608.1940.1 ID=mRNA_H-elongata_contig12608.1940.1|Name=mRNA_H-elongata_contig12608.1940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7162bp|location=Sequence derived from alignment at H-elongata_contig12608:1112..8273+ (Himanthalia elongata Himel1 dioecious)
CTTCCTTCTGCCATGGAGGCGTACACGAGGGCGGTGGCGCGGCGATGTTT GAAGATGCAGGGTCGCCCTGCGTCTGACATCGGTGTTGCGGGTCTTCTCG CCGACGCGTACGAAGCTAACATCTCACCTGAACAGCGGTCAGGCAAGAGA AAAATGTGTGGATGCCTCGTGCTCGTTATATCCTTATGTCCCCGCGTTTC ATCTGCAAGGGGTGTTCTCAGAAATGAAGGTGCTAATTGCGTGCCTTCAT TGAGATTAATATATATATATATATACAGTAATGGTGGGAATTTGCTCGGA GCGTGTCTCGATTATTAATGTCAATGAGTGGGGTCAGGGAGGAATTTCTG GTCTTCGGGAACGCTTCGTTAATAATCGTTTTTCTGGAGCTTCGTAATGG CACCTCGGTCCACTTGGTGCTGTCATCCCATATATTCTGGACGTCAGACT TGTAGACGCACCAGTCGGGGTCACACAGGAGGAAGGTCACACATAATTTC TCTACCTTCTTTCTGCGGTGCTTGTCTTAATTTTTATCGCGAAAAGGATT CAGCAGTCCCTTTTCCTCGTCGACCGTGAAGTCGAATTTTGTGTACCCAC GATTAATCGTTCCCCACTTATTGGACATAATATGAGAGAAAACCCAAGTC GTGTGACTGGGCCAAGATTTGAGCTCACGTCCCAACGTCAGAAGGTTTCG GGGTTGCCAGCTGAATCACCAGGGTGACCGTGAGTCATCGCGAATGCTTA GCGGAACGTTCATGATATCAACAATCAACAGCCTTACAACTAACTCAATT TGGCGTTTTCTAAAGTCACGTGTTTGCGGTCTAGCAGTTCAAGTCGTGTC GTAGAGAGTTGCCCGGGTTGATCCTCACACACCCTACACCAGCAGCTTAT GCAGTAGCAACTCGACGCAGTTTTTCCGCTTCGGATGTTGTCGCGTTACG CACGCAGGCTTTCGTTTACTTCTCTTAGTGCTGAACTCGAGACTGGGCGC CCTCATCTTTACCGGAAGAGCTGTGCCCATTTCATCTCAGGATCTGGCCT CACGACATACGCTACTCAAGCAATGGTCTACCTCCCGAGTGAGCAAGCTG AGGGAGGCCTTCCAGGTACGTACCCCAGGGAACAGGGTAGCACACTACCG GGAAACGTTGTCCTGGGCATTATTTTGAAAAGAACTCGGCGTAACGTCTC AAAAACCGCAGTGCTTTGTTGAAGTATTATAGCGGTCTAGTTAAGAGGGG GGGTGTTGTTGCATCTACGAGGTTTATTGCGTATACTTAGAAACAAACAG TGTTCCGCATTAGGGACAGGGGCGGAGTTGTTACGCGTGATCTCCGGCAA CAAAACTGATGCGTGTTGTCAGGCCCAACCCACGAATGAACTTCAAGACT TCTGCATGTGGCAATGAGCTCGTCATCGACCCGAAGCTGTGTCGTACATA GACATACAACCATGCACCCACAAGCATACAAAGTACGCACACGCACGGAA TACGGCACAGGGTATCAAGCGACTCGCGTCTTCACTGTACTTTAGTGCGC ATCCCGAGGTGGTGTCGATGGAATGCTTGACGGCAACGGCTGCGGCAACG ATGAAGACGAATCCGAACTGGGAAGACATTCGGTACGATCCTCAGCACCA CAGCATCGCGCGAGACGGCCTTCTAGGGGAGGCAGCAGTCGTGCCGGAGT TCGGTCAACGGTCAGACGCGAAGGTAAAGTAATTCAGTTTGGCGCCGTCA AGCCGGTATTTGTCCTTGCGTGTTTTTTTTTTTACATGGCATTTGCTGTT GCACTCGCTAGGTATTCAACCCTCTAACTTCTACCCGCGGCTTCGTGATG TATCCCGGAGATGTCGTCAATCTTTTTCTGTGGGTCCTAACGCATTAATT CCGTTCCGACTGTCCATCAAAACGGTCCCTCTGCTGCGTTACACAGGACA AATGCATCCAGACCGCCAAAGCAGCAACTGGAATCATATCGCCGTCTTTT CGCGAGCCAGATAGTCCAACTGATTTCTCACCCACATGTGTATCAGCCAC TGGACCCTCCGCATCAAGGGTTTCGTCGCTTGCCGAAGGTGTCGACGGTG GTCACGCCGAAGGCGTCGTCGTCGGTAGTGGTAGCGTAGGTCCGCGAGGA AGCGAAGGTCAGACGCCCGTTGCGTCGACCGAGGCGCCGCCATCTAAGCT TGTCGTGGACGTTGTAGTCATTGGCTCTGGAGCAGGTGGCGGGTGCGCCG CAGGGGTCCTCGCGTCGAAGGGCTTGAAGGTGGCGGTGCTGGAAAAAGGA GGCCTTTACGATCAGAATGATTTCGCTGCGTTCTCGGAGATGGAGGCGTA TCGTCGGTTGTACGAGCGCCAGGTAGATGACGCGTCGACCATTATGCTTT CGACCCACCCGCACTATCGAGGCGATTGGAAACCTGTTCCCTTGCGTCTG CTGGAATATAAATGATGTGGTGTAATCTTAAGACATTTTTTTTTTGGTGA TCGATTGATGTATTATACAACCGCAAGGTGAATGATCGTCACCGCAGAGC TGTCCCGAGATCGCGAGTTAATGACGCGGAAAGCCAGAAACGGCGGCAAG CGTGAGAGGTCATATTCATCTTATACGGTGTCATGGTAGCCAAATGCAGC AATCTAATCTCATACCCCCCCCCCCCCATCTCCAACACACCTTCCTTCGG GACATTCTTCTCTTCGGTGTGATAATAGGGTGTCCTGGTGTCGACCGACT CAAGCTTGGTGCTCTTGGCGGGGTCATGCGTGGGGGGAGGAACCACGGTA AACTGCGCGGCTAGCTTTCGCACTCCCAGGTAAAATAAAATTCTATATTT ATGAAGCATTCAGTCGCTCGTTTCTGCCAACAAAAGTAAAGGAACCAGCG CGATACCGTGACATGCCACAGTATCCGTCATCAATGTCCACCTTCTCGCC GTATCAAAGCAGGCACGTGCGGCTTGAGTGGGTCCAGAAGATGAACCTCA AGAGTTTTGAGCCGGGCGGACCTTTCGACAAAGCCCTGGACGTTGTCTGC AAGCGACTTGAGGTGCGCGTGCCATGGCAGCCTGTCGAGGCCTCGTGCCT CTCGACCGCGGGCCTGGTGCAGCGCGCCGCACCCTCCACTGCTTGTTGCA GAACTCACTGCACACTGCTGTTTTGTTGGGGACATGTATCTGTTCGTGTC GTGTTTTATGCTGGGAGGGGGGCGCCAATCACTATTTCCATCTCACCATG CGCGCGTACGGAAGAGTGTTAGGATAGAGACAAAAAGCGTGGTCTCGGAC CGTTCCCGTCAACATCAGGATGTGCTCTCTGGGTTGCTGTTGTTGTTCCC TAGTAGTGTGGATGTATGGTATATTTTTATGCGTCTATGTATAGTGTCAG TCTGACCGTATTCCTAGCTTTCGGGTAACGATGAGGAGTGAAGCATAAGC AACACCCATAAATCCACTCACCCACCCATTTTTTATTTGTTTGAATTCTG ACACAAGCTGATGTCAAAATCCAGCCCGTGATCATAAGGTAGAAAAAACG ACATCCGGAATTAAAACGTACAACGTACTCGATGCTAATGGAAACTGCAA TAAACTTGTATCATATACTTAAATACTAAACCCTTTATCCCCCAAAAAAA TGAAGTCAGCTTATGTCTACTAAACAATGACAAAATCATATTCCCCTTAT GCCAATGCCTAATTAACATTCATCAACTCTCTACGAGCACATTGGTAGTT AGCGCATAAGCAGCATATAAGTACGAGTTTAACCTCTTATTATCCCATAA GACAATATTTTAGCTAACGCCAATAATAACCCCCCCATCTTTTCCTACCC CTGATAGTATTAATAATATATACATATTCATCTCTACTGGGCTTTGCCAA TATCAATCCATATTTTGCATATGCCCAAAAATACAGAAATAAATGTAATT TCATTCACCCCCCTCCTCTTACCTCCCCACTCTCTACGCTCTGGTTTGGC GTCCCCACATACGGTAATGAATAATGTAAGTGTACAGTATAACGATGAGA TTCTCCCCAAGATTATACTGTTGACCCGATGTGATCATAATTGGGGAACA CGAGCAATCACATTTGACGATTTTATGCTCAAAGGTAGTAATGTACACAC TCCAACCTGACGATGGTTGGTCCCCTGGACTTCACCGCCCGTGGTGTAAA GAAGGCTTGGATTTTCATCGGGTTTGAATAAGTTCATACATGTTATGCTT TTAAAAGAATACTAGGAAAAAGTGACTACAAAAAATATAAAAATAAAAGA TAAACAACACACTTATTAAGTAACTGCGTGTGGTTGTCGAAACGCATTCC TATTGAAGAACAATTGAACCAAGAGCCGCGGAATAAATGAAAACGGTTTT TAAGAAAACAAAGAAAAGTAACCCCAGATAAAGGCAATATGACATCGGCA AACAAAACGCACGAAGGATGCAAGTTTGCGCCACTTCTTTCCTTTTATGT TTTCTTTTCTTTTTTTGACGTGGAGGTGAACACGGATTATTCGCATCGAG CGCCGGGATGCCCAGCCCCAGCCTCCCTGAAAGTGAACCAGCACCAAACC AGCTTGTGGAACGGTGCCGTGGCGTCCGGTCGGACCCCGAAGGCCGTTCC GAGGAACGCTAAGGATTGCGTAGACTGCGGCAGCTGTGTGCACGGCTGCG CGTTCGGAAACAAACGATCCACACATGTGAGAAGCAGGGGTGTAAAAAAA TGGGATCAATCTCCGTCCGATCGCGGATGCGAAATGGACGCGCTACCCGA AGTCGAAGCCATCGGGCGTCAACGCTGCGAGAACGTTGATTCGGCCGACC TGCCACATTCCTTTCCGTGAAAAGTTACCTTTTATTAATACCAGATATAT GTATTATTTATATGTGTACTATAATTATATTTATTTTTATTAATTTGCAT TAGACCGCGCAAATCGGCGTGACACGTAAAGAGGCGACACAGTGGTTTGC AAATACCACCTCCCTTATTGGGAGCTATCCCTGAAGACGTTGGATTCGCT AATCGAGTTTCTTGGCGGTGATGTTTCTGCCCGCACTAAGACCCACTAAA TGCAGACCACCGCGACTAACTTCTCTTATTCAGTTTTCTACACTTCACGC CTCTTTCCAGCCGTGACATTCGATCGATTCCCCATTCATGTTTTCATTAT GTTTCTTCCTTTCACCAAGGTCACCTGGCTGCAAGATGGGCTGGACTCCG GGAACATTATTCTGATCCCTAACGCTAAGGCGAGCCATCGTAAAAGCCCC TTCCCATTTGCCACCATTGGCATGAGGAGCGTACACTATCATGAAGTCTC TACCCAAGAATATATATCGCGGTGATGTGCACGTACTTGATTTCTAGATA TGGCTTTCTAGCTCATACAAGTCTCCGAAGTCTGCGTGCAGGCGACGGTT GGGCTAGAGCACGTTTGCGGGTGCTGATTAGAAGGTTCACTCCGTGTTCA AATAGACGCGGTGCCTCAACGATAGGCGACATCGCGGCAAAAATACTTTA GCCGACATCGTTGTCGAAGATGCGCGTCAGCTCTCTGCTTTTTTCTCCGG ATCACGCTCAGATGCGTCAGGCTTGGCGCAGAATGTTTATCTCGTAGTAG ATATACTGTCATAAAGGTTGGGGCTTTCTTTCTTTCGGTCCTTGGCAGGT AGATAAAGTCCTCATAGACGGTGGAAAGGCGACCGGCGTCACCGCTACGG TCACCACCCATGACTGCGGCTATGGCGACGACAAGGTGACTGAACCTCGA GCACGAAATACAGAAGGGTCATCATGAGAGGCACTCGCTTTTGCGTCATA TGTCGTAGGATTTCGGGAAGAAGTGGGGCGGTGCAAACTCAAGCACCAAA AGCCTTTATCCCTAGTATATATTTGTTTTCCCCCTTCTCTCATTCTCCAC GCGGCACGCTCTCGCTGCACAAGCGTCCATCGACGACGGAATCGCGCTGT AATATATCGCCACTCAATCGATCGATCAAATTGAGACCCCCAGGCCGTTG CCACCCCCGCCCTCAGGTAACCCCCCTGGAAGTTCAAGGCAGGGCCGTTG TGGTCTCCGGTGGGGCGATTCACACTCCTGCTGTTCTCTTGCGGTCTGGC CTCAAGCATCCGAAGATCGGGCGCCACCTGGGCTTGCACCCGGTCCTGTT GGCGGGAGGCGTGTTTCCCGAGGATTACCGTATAGAGGGAAGAAGTGCTA CTCCGCAGGATACCGGCGGGGCCTCCGATGCCGCAAGCCCGGCGGAGGCG GCGGCTACGATCGGGATCGAGGTTAGTTGCTCGCCCGTTGTGTGCCTCGC AAACGAAAGCCGATATGCCTTCCCCTTGTGGTGCTGTGCCCCAAACACAC ACAAACCATTCACCCCCCCTACTCTACGAGACAACACCTTCAATCGCCGA AGCGTACTAGGGGTGGACGGCGTAATTCAAAACCCCTGGCGCTTGCGGAT GCCCGCGCGTAACAACCGCGGATACGCTTGTACAAAGAGCATTTCCTCTG TCCCACGATTTTGCCGGACTCGACGTGACATGCGTTTTAAGGGTAAAACT GAGGCAAAGGTGTCTTCTGGAGAGAGGTCCAAGGCAGCAGGAAACCTCAA GCAACCCGGCATCTCTCCCAGGATCCCAGTATTCGGCAGTGGCGTCATGA TGGGCACATATGTTCAAGACCTGATGGGGCTGGACGGAGGTGATTGCGTA GATCCGGCGAACGCGTGGCCAGCGGGCTGCCGCCTCGCGCGCGCTCACGG AACTTTATAGCAACTCGGTTTCCCATTTTCCTCCTGGGTTTGAGTTTCCC CATGTGTGTTCATATATATATATCCGCCTCACGTTGGTTGATGTGTATTG CACGTACGGAATGCTGCCAGTATTTGGACAGAAGGCGTCTGCTCTTGGTA GCAAGGTAGGATAATGCCATTTTTGTGCACAGTGCAATGAAACTTAAACA TTCCCCAAAGCTTTACCGAGATTAATTAGCAAATCATTCCCGCTCCCGCA CCAACGCTGATGCGTCCCGACAGGATACGGTTGTGTCATAGAGGCACCTC CATCTCACCCAGGGTTGACCGGTTTGGTACTGCCGTGGAACGACGGCCTT TCTCACAGGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12608:1112..8273+

>mRNA_H-elongata_contig12608.1940.1 ID=mRNA_H-elongata_contig12608.1940.1|Name=mRNA_H-elongata_contig12608.1940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3972bp|location=Sequence derived from alignment at H-elongata_contig12608:1112..8273+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGCGTACACGAGGGCGGTGGCGCGGCGATGTTTGAAGATGCAGGG
TCGCCCTGCGTCTGACATCGGTGTTGCGGGTCTTCTCGCCGACGCGTACG
AAGCTAACATCTCACCTGAACAGCGGTCAGGCAAGAGAAAAATGTATGGA
GGCGTACACGAGGGCGGTGGCGCGGCGATGTTTGAAGATGCAGGGTCGCC
CTGCGTCTGACATCGGTGTTGCGGGTCTTCTCGCCGACGCGTACGAAGCT
AACATCTCACCTGAACAGCGGTCAGGCAAGAGAAAAATGTGCTTTCGTTT
ACTTCTCTTAGTGCTGAACTCGAGACTGGGCGCCCTCATCTTTACCGGAA
GAGCTGTGCCCATTTCATCTCAGGATCTGGCCTCACGACATACGCTACTC
AAGCAATGGTCTACCTCCCGAGTGAGCAAGCTGAGGGAGGCCTTCCAGGC
TTTCGTTTACTTCTCTTAGTGCTGAACTCGAGACTGGGCGCCCTCATCTT
TACCGGAAGAGCTGTGCCCATTTCATCTCAGGATCTGGCCTCACGACATA
CGCTACTCAAGCAATGGTCTACCTCCCGAGTGAGCAAGCTGAGGGAGGCC
TTCCAGGGTATCAAGCGACTCGCGTCTTCACTGTACTTTAGTGCGCATCC
CGAGGTGGTGTCGATGGAATGCTTGACGGCAACGGCTGCGGCAACGATGA
AGACGAATCCGAACTGGGAAGACATTCGGTACGATCCTCAGCACCACAGC
ATCGCGCGAGACGGCCTTCTAGGGGAGGCAGCAGTCGTGCCGGAGTTCGG
TCAACGGTCAGACGCGAAGGGTATCAAGCGACTCGCGTCTTCACTGTACT
TTAGTGCGCATCCCGAGGTGGTGTCGATGGAATGCTTGACGGCAACGGCT
GCGGCAACGATGAAGACGAATCCGAACTGGGAAGACATTCGGTACGATCC
TCAGCACCACAGCATCGCGCGAGACGGCCTTCTAGGGGAGGCAGCAGTCG
TGCCGGAGTTCGGTCAACGGTCAGACGCGAAGGACAAATGCATCCAGACC
GCCAAAGCAGCAACTGGAATCATATCGCCGTCTTTTCGCGAGCCAGATAG
TCCAACTGATTTCTCACCCACATGTGTATCAGCCACTGGACCCTCCGCAT
CAAGGGTTTCGTCGCTTGCCGAAGGTGTCGACGGTGGTCACGCCGAAGGC
GTCGTCGTCGGTAGTGGTAGCGTAGGTCCGCGAGGAAGCGAAGGTCAGAC
GCCCGTTGCGTCGACCGAGGCGCCGCCATCTAAGCTTGTCGTGGACGTTG
TAGTCATTGGCTCTGGAGCAGGTGGCGGGTGCGCCGCAGGGGTCCTCGCG
TCGAAGGGCTTGAAGGTGGCGGTGCTGGAAAAAGGAGGCCTTTACGATCA
GAATGATTTCGCTGCGTTCTCGGAGATGGAGGCGTATCGTCGGTTGTACG
AGCGCCAGGACAAATGCATCCAGACCGCCAAAGCAGCAACTGGAATCATA
TCGCCGTCTTTTCGCGAGCCAGATAGTCCAACTGATTTCTCACCCACATG
TGTATCAGCCACTGGACCCTCCGCATCAAGGGTTTCGTCGCTTGCCGAAG
GTGTCGACGGTGGTCACGCCGAAGGCGTCGTCGTCGGTAGTGGTAGCGTA
GGTCCGCGAGGAAGCGAAGGTCAGACGCCCGTTGCGTCGACCGAGGCGCC
GCCATCTAAGCTTGTCGTGGACGTTGTAGTCATTGGCTCTGGAGCAGGTG
GCGGGTGCGCCGCAGGGGTCCTCGCGTCGAAGGGCTTGAAGGTGGCGGTG
CTGGAAAAAGGAGGCCTTTACGATCAGAATGATTTCGCTGCGTTCTCGGA
GATGGAGGCGTATCGTCGGTTGTACGAGCGCCAGGGTGTCCTGGTGTCGA
CCGACTCAAGCTTGGTGCTCTTGGCGGGGTCATGCGTGGGGGGAGGAACC
ACGGTAAACTGCGCGGCTAGCTTTCGCACTCCCAGGGTGTCCTGGTGTCG
ACCGACTCAAGCTTGGTGCTCTTGGCGGGGTCATGCGTGGGGGGAGGAAC
CACGGTAAACTGCGCGGCTAGCTTTCGCACTCCCAGCAGGCACGTGCGGC
TTGAGTGGGTCCAGAAGATGAACCTCAAGAGTTTTGAGCCGGGCGGACCT
TTCGACAAAGCCCTGGACGTTGTCTGCAAGCGACTTGAGCAGGCACGTGC
GGCTTGAGTGGGTCCAGAAGATGAACCTCAAGAGTTTTGAGCCGGGCGGA
CCTTTCGACAAAGCCCTGGACGTTGTCTGCAAGCGACTTGAGGTGAACAC
GGATTATTCGCATCGAGCGCCGGGATGCCCAGCCCCAGCCTCCCTGAAAG
TGAACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTGGCGTCCGGTCGG
ACCCCGAAGGCCGTTCCGAGGAACGCTAAGGATTGCGTAGACTGCGGCAG
CTGTGTGCACGGCTGCGCGTTCGGAAACAAACGATCCACACATGTGAACA
CGGATTATTCGCATCGAGCGCCGGGATGCCCAGCCCCAGCCTCCCTGAAA
GTGAACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTGGCGTCCGGTCG
GACCCCGAAGGCCGTTCCGAGGAACGCTAAGGATTGCGTAGACTGCGGCA
GCTGTGTGCACGGCTGCGCGTTCGGAAACAAACGATCCACACATGTCACC
TGGCTGCAAGATGGGCTGGACTCCGGGAACATTATTCTGATCCCTAACGC
TAAGGCGAGCCATCGTCACCTGGCTGCAAGATGGGCTGGACTCCGGGAAC
ATTATTCTGATCCCTAACGCTAAGGCGAGCCATCTCCTCATAGACGGTGG
AAAGGCGACCGGCGTCACCGCTACGGTCACCACCCATGACTGCGGCTATG
GCGACGACAAGTCCTCATAGACGGTGGAAAGGCGACCGGCGTCACCGCTA
CGGTCACCACCCATGACTGCGGCTATGGCGACGACAAGGTAACCCCCCTG
GAAGTTCAAGGCAGGGCCGTTGTGGTCTCCGGTGGGGCGATTCACACTCC
TGCTGTTCTCTTGCGGTCTGGCCTCAAGCATCCGAAGATCGGGCGCCACC
TGGGCTTGCACCCGGTCCTGTTGGCGGGAGGCGTGTTTCCCGAGGATTAC
CGTATAGAGGGAAGAAGTGCTACTCCGCAGGATACCGGCGGGGCCTCCGA
TGCCGCAAGCCCGGCGGAGGCGGCGGCTACGATCGGGATCGAGGTAACCC
CCCTGGAAGTTCAAGGCAGGGCCGTTGTGGTCTCCGGTGGGGCGATTCAC
ACTCCTGCTGTTCTCTTGCGGTCTGGCCTCAAGCATCCGAAGATCGGGCG
CCACCTGGGCTTGCACCCGGTCCTGTTGGCGGGAGGCGTGTTTCCCGAGG
ATTACCGTATAGAGGGAAGAAGTGCTACTCCGCAGGATACCGGCGGGGCC
TCCGATGCCGCAAGCCCGGCGGAGGCGGCGGCTACGATCGGGATCGAGGG
TAAAACTGAGGCAAAGGTGTCTTCTGGAGAGAGGTCCAAGGCAGCAGGAA
ACCTCAAGCAACCCGGCATCTCTCCCAGGATCCCAGTATTCGGCAGTGGC
GTCATGATGGGCACATATGTTCAAGACCTGATGGGGCTGGACGGAGGGTA
AAACTGAGGCAAAGGTGTCTTCTGGAGAGAGGTCCAAGGCAGCAGGAAAC
CTCAAGCAACCCGGCATCTCTCCCAGGATCCCAGTATTCGGCAGTGGCGT
CATGATGGGCACATATGTTCAAGACCTGATGGGGCTGGACGGAGGATACG
GTTGTGTCATAGAGGCACCTCCATCTCACCCAGGGTTGACCGGTTTGGTA
CTGCCGTGGAACGACGGCCTTTCTCACAGGTAGGATACGGTTGTGTCATA
GAGGCACCTCCATCTCACCCAGGGTTGACCGGTTTGGTACTGCCGTGGAA
CGACGGCCTTTCTCACAGGTAG
back to top