mRNA_H-elongata_contig126049.1939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126049.1939.1
Unique NamemRNA_H-elongata_contig126049.1939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.100e-20
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 ARVTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFER 141
            ARVTDAVQFGDGFGLAGAVI+HL+GQRHQFELLDFSYH+L V+NFER
Sbjct: 1228 ARVTDAVQFGDGFGLAGAVIMHLLGQRHQFELLDFSYHVLNVNNFER 1274
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.970e-20
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 ARVTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFER 141
            ARVTDAVQFGDGFGLAGAVI+HL+GQRHQFELLDFSYH+L V++FER
Sbjct:  934 ARVTDAVQFGDGFGLAGAVIMHLLGQRHQFELLDFSYHVLNVNSFER 980
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A7S1UBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBW1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    7 VTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFE 138
            VT+ V+FG GF +AG + VHL+GQRH+FELLDFSYH+  V + E
Sbjct:  591 VTNEVEFGHGFAIAGCLFVHLLGQRHKFELLDFSYHMCNVADHE 634
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A7S2F5C9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5C9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.990e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 VTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFE 138
            V D   FG GF LAG +++HL+  + +FELLD+S H+L+VH FE
Sbjct:  698 VADQECFGHGFALAGNLVIHLLDVKSRFELLDYSLHVLRVHEFE 741
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A7S3ETQ6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ETQ6_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.280e-6
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 RVTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKV 126
            ++ +++ FGDG  +AGA+ +H +GQRH+FEL DFS H+  V
Sbjct:  186 QIDNSMLFGDGVPMAGALFLHFLGQRHRFELFDFSQHVFSV 226
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A267GL69_9PLAT (Cytoplasmic FMR1-interacting protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GL69_9PLAT)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-6
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   25 FGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFER 141
            FG+G   AGA ++ L+GQ  +FELLDFSYHLL+V+ F++
Sbjct: 1189 FGEGLQWAGAALLVLLGQERRFELLDFSYHLLRVNKFDQ 1227
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: UPI001EAF7978 (cytoplasmic FMR1-interacting protein 1 homolog n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF7978)

HSP 1 Score: 50.4 bits (119), Expect = 3.010e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 FGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKV 126
            FGDG   AG +I+ L+GQ+ +F++LDFSYHLLKV
Sbjct:  107 FGDGLHWAGCMIISLLGQQRRFDILDFSYHLLKV 140
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: UPI00094F0111 (cytoplasmic FMR1-interacting protein 1 homolog n=2 Tax=Percomorphaceae TaxID=1489872 RepID=UPI00094F0111)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 FGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKV 126
            FGDG   AG +I+ L+GQ+ +F++LDFSYHLLKV
Sbjct:  101 FGDGLHWAGCLIISLLGQQRRFDILDFSYHLLKV 134
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: A0A8C4AVH4_9TELE (Cytoplasmic FMR1-interacting protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AVH4_9TELE)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 FGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKV 126
            FGDG   AG +I+ L+GQ+ +F++LDFSYHLLKV
Sbjct: 1155 FGDGLNWAGCMIITLLGQQRRFDILDFSYHLLKV 1188
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BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Match: UPI001EAF22B3 (cytoplasmic FMR1-interacting protein 1 homolog n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF22B3)

HSP 1 Score: 50.4 bits (119), Expect = 6.270e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 FGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKV 126
            FGDG   AG +I+ L+GQ+ +F++LDFSYHLLKV
Sbjct:  173 FGDGLHWAGCMIISLLGQQRRFDILDFSYHLLKV 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126049.1939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI2.100e-2089.36UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQX8_9PHAE9.970e-2087.23UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1UBW1_9STRA1.640e-1061.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2F5C9_9STRA2.990e-752.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ETQ6_9EUKA1.280e-648.78Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A267GL69_9PLAT2.680e-656.41Cytoplasmic FMR1-interacting protein n=3 Tax=Macro... [more]
UPI001EAF79783.010e-661.76cytoplasmic FMR1-interacting protein 1 homolog n=1... [more]
UPI00094F01114.330e-661.76cytoplasmic FMR1-interacting protein 1 homolog n=2... [more]
A0A8C4AVH4_9TELE5.010e-661.76Cytoplasmic FMR1-interacting protein n=1 Tax=Denti... [more]
UPI001EAF22B36.270e-661.76cytoplasmic FMR1-interacting protein 1 homolog n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126049contigH-elongata_contig126049:52..195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue7.9e-17
Seed eggNOG ortholog2880.D7G6Y8
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.0552607-CDS-H-elongata_contig126049:51..1951622929746.0552607-CDS-H-elongata_contig126049:51..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126049 52..195 +
1691679141.4196966-CDS-H-elongata_contig126049:51..1951691679141.4196966-CDS-H-elongata_contig126049:51..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126049 52..195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126049.1939.1prot_H-elongata_contig126049.1939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126049 52..195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126049.1939.1

>prot_H-elongata_contig126049.1939.1 ID=prot_H-elongata_contig126049.1939.1|Name=mRNA_H-elongata_contig126049.1939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
ARVTDAVQFGDGFGLAGAVIVHLMGQRHQFELLDFSYHLLKVHNFER*
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mRNA from alignment at H-elongata_contig126049:52..195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126049.1939.1 ID=mRNA_H-elongata_contig126049.1939.1|Name=mRNA_H-elongata_contig126049.1939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig126049:52..195+ (Himanthalia elongata Himel1 dioecious)
GCGCGCGTGACGGACGCCGTGCAGTTCGGTGATGGATTTGGACTTGCGGG
GGCGGTGATAGTACATCTCATGGGGCAACGGCACCAGTTCGAATTGCTGG
ACTTCTCTTACCACTTACTGAAAGTCCACAACTTCGAAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig126049:52..195+

>mRNA_H-elongata_contig126049.1939.1 ID=mRNA_H-elongata_contig126049.1939.1|Name=mRNA_H-elongata_contig126049.1939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig126049:52..195+ (Himanthalia elongata Himel1 dioecious)
GCGCGCGTGACGGACGCCGTGCAGTTCGGTGATGGATTTGGACTTGCGGG
GGCGGTGATAGTACATCTCATGGGGCAACGGCACCAGTTCGAATTGCTGG
ACTTCTCTTACCACTTACTGAAAGTCCACAACTTCGAAAGGTGAGCGCGC
GTGACGGACGCCGTGCAGTTCGGTGATGGATTTGGACTTGCGGGGGCGGT
GATAGTACATCTCATGGGGCAACGGCACCAGTTCGAATTGCTGGACTTCT
CTTACCACTTACTGAAAGTCCACAACTTCGAAAGGTGA
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