mRNA_H-elongata_contig125994.1936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125994.1936.1
Unique NamemRNA_H-elongata_contig125994.1936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.650e-13
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 YWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA 141
            YWS  RDF+ G +PR  L+E L ASLGA+N+HLHNEL+LCL+NNA
Sbjct:   56 YWSALRDFMHGWLPRGGLDEALDASLGADNLHLHNELILCLLNNA 100
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BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.880e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    7 YWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA 141
            YWS  RDF+ G + R  L+E L ASLGA+N+HLHNEL+LCL+NNA
Sbjct:   99 YWSALRDFMHGWLSRGGLDEALDASLGADNLHLHNELILCLLNNA 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LER5_ECTSI5.650e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRA3_9PHAE6.880e-1264.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125994contigH-elongata_contig125994:1223..1363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929745.852996-CDS-H-elongata_contig125994:1222..13631622929745.852996-CDS-H-elongata_contig125994:1222..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125994 1223..1363 -
1691679141.3309343-CDS-H-elongata_contig125994:1222..13631691679141.3309343-CDS-H-elongata_contig125994:1222..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125994 1223..1363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125994.1936.1prot_H-elongata_contig125994.1936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125994 1223..1363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125994.1936.1

>prot_H-elongata_contig125994.1936.1 ID=prot_H-elongata_contig125994.1936.1|Name=mRNA_H-elongata_contig125994.1936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
AGYWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA
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mRNA from alignment at H-elongata_contig125994:1223..1363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125994.1936.1 ID=mRNA_H-elongata_contig125994.1936.1|Name=mRNA_H-elongata_contig125994.1936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig125994:1223..1363- (Himanthalia elongata Himel1 dioecious)
GCGGGGTACTGGTCGACGTTCAGAGACTTCCTGCGGGGTTGTATTCCTCG
TAGCGAACTAGAAGAAGAGCTTATCGCGTCCCTGGGTGCCGAGAACGTCC
ACCTCCACAACGAGCTTGTCTTGTGCCTTATCAACAATGCG
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Coding sequence (CDS) from alignment at H-elongata_contig125994:1223..1363-

>mRNA_H-elongata_contig125994.1936.1 ID=mRNA_H-elongata_contig125994.1936.1|Name=mRNA_H-elongata_contig125994.1936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig125994:1223..1363- (Himanthalia elongata Himel1 dioecious)
GCGGGGTACTGGTCGACGTTCAGAGACTTCCTGCGGGGTTGTATTCCTCG
TAGCGAACTAGAAGAAGAGCTTATCGCGTCCCTGGGTGCCGAGAACGTCC
ACCTCCACAACGAGCTTGTCTTGTGCCTTATCAACAATGCGGCGGGGTAC
TGGTCGACGTTCAGAGACTTCCTGCGGGGTTGTATTCCTCGTAGCGAACT
AGAAGAAGAGCTTATCGCGTCCCTGGGTGCCGAGAACGTCCACCTCCACA
ACGAGCTTGTCTTGTGCCTTATCAACAATGCG
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