mRNA_H-elongata_contig125891.1928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125891.1928.1
Unique NamemRNA_H-elongata_contig125891.1928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A0A835ZBQ5_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-10
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RNCDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPGPKV 123
            +NCD CV +K+KC G  PC MC RK LVC +S KQKPGPKV
Sbjct:  239 KNCDGCVARKIKCDGLLPCCMCARKHLVCAYSYKQKPGPKV 279
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A0A836CEN4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 CDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPGPK 120
            CD+C ++K KCSG+ PC+ C+ KG+VC FS + K GPK
Sbjct:   44 CDHCHRRKRKCSGTEPCSRCQAKGIVCVFSMRSKRGPK 81
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: R9AEI2_WALI9 (Zn(2)-C6 fungal-type domain-containing protein n=3 Tax=Wallemia ichthyophaga TaxID=245174 RepID=R9AEI2_WALI9)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-6
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 NCDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPGPKVGLG 132
            +C +C  +KV+CSG+NPCT C ++G  C F +K KPG K G G
Sbjct:    7 SCTSCRSRKVRCSGTNPCTACLKRGDNCVFKQKLKPGLKKGTG 49
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A0A1V6TU96_9EURO (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Penicillium steckii TaxID=303698 RepID=A0A1V6TU96_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 5.470e-6
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 NCDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKP-GPK 120
            +CD C K+K KCSGS+PCT+C++ G  C F + +KP GP+
Sbjct:   14 SCDTCRKRKSKCSGSSPCTICQKLGTTCHFQQTRKPRGPR 53
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A0A835ZAK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.500e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    7 CDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPGPK 120
            CD C  +K KCSG +PC MC+RKG+ C +S+  K GPK
Sbjct:   31 CDLCKARKRKCSGGDPCQMCRRKGVSCNYSKALKRGPK 68
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A3LWN6_PICST (Fungal transcriptional regulatory protein (Fragment) n=1 Tax=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) TaxID=322104 RepID=A3LWN6_PICST)

HSP 1 Score: 49.7 bits (117), Expect = 1.400e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    7 CDNCVKKKVKCSGSNPCTMCKRKGLVCRFSR-KQKPGPK 120
            CD C  +KVKCSGS PCT C +KG+ C  +R K+K GPK
Sbjct:    4 CDGCSVRKVKCSGSRPCTRCVKKGIPCTNNRIKKKSGPK 42
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: C7Z1R9_FUSV7 (Proline--tRNA ligase n=2 Tax=Fusarium solani species complex TaxID=232080 RepID=C7Z1R9_FUSV7)

HSP 1 Score: 48.9 bits (115), Expect = 2.630e-5
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 RNCDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPG 114
            +NC+NC ++KVKCSG  PC  C R GL CRF    + G
Sbjct:  457 KNCENCRRRKVKCSGKQPCPTCTRLGLECRFGNITRRG 494
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BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Match: A0A2S7Y9K5_BEABA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Beauveria bassiana TaxID=176275 RepID=A0A2S7Y9K5_BEABA)

HSP 1 Score: 47.4 bits (111), Expect = 9.220e-5
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    7 CDNCVKKKVKCSGSNPCTMCKRKGLVCRFSR--KQKPGPK 120
            CD+C K++VKCSGS PCT+C   G  C F    + + GPK
Sbjct:   21 CDSCRKRRVKCSGSQPCTLCSESGRCCEFDNGSRSRRGPK 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125891.1928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZBQ5_9STRA1.780e-1065.85Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CEN4_9STRA1.560e-655.26Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
R9AEI2_WALI92.130e-651.16Zn(2)-C6 fungal-type domain-containing protein n=3... [more]
A0A1V6TU96_9EURO5.470e-652.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835ZAK1_9STRA5.500e-655.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A3LWN6_PICST1.400e-558.97Fungal transcriptional regulatory protein (Fragmen... [more]
C7Z1R9_FUSV72.630e-552.63Proline--tRNA ligase n=2 Tax=Fusarium solani speci... [more]
A0A2S7Y9K5_BEABA9.220e-550.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125891contigH-elongata_contig125891:2..901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.7125075-CDS-H-elongata_contig125891:1..311622929744.7125075-CDS-H-elongata_contig125891:1..31Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125891 2..31 +
1691679140.816552-CDS-H-elongata_contig125891:1..311691679140.816552-CDS-H-elongata_contig125891:1..31Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125891 2..31 +
1622929744.7237275-CDS-H-elongata_contig125891:781..9011622929744.7237275-CDS-H-elongata_contig125891:781..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125891 782..901 +
1691679140.8251274-CDS-H-elongata_contig125891:781..9011691679140.8251274-CDS-H-elongata_contig125891:781..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125891 782..901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125891.1928.1prot_H-elongata_contig125891.1928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125891 2..901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125891.1928.1

>prot_H-elongata_contig125891.1928.1 ID=prot_H-elongata_contig125891.1928.1|Name=mRNA_H-elongata_contig125891.1928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
RNCDNCVKKKVKCSGSNPCTMCKRKGLVCRFSRKQKPGPKVGLGDLCASN
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mRNA from alignment at H-elongata_contig125891:2..901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125891.1928.1 ID=mRNA_H-elongata_contig125891.1928.1|Name=mRNA_H-elongata_contig125891.1928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=900bp|location=Sequence derived from alignment at H-elongata_contig125891:2..901+ (Himanthalia elongata Himel1 dioecious)
CGGAACTGCGACAATTGTGTGAAGAAGAAGGTATATTTAATTTTTCATTA
AACGTACGTGGATAATCATCGAGTAGCACCTAAGATAAATCCTAACGTTG
GTTTCCACCAGGCAATATTTCCGTTAGAAAAGGGTGACAATGCCTTGAGG
CAATGAAAGCGGCAAAAACATTTTCTTGCTAGGCTGTTGCCGACTTTTTT
TGCACCGTCTCTTAACAGAGCGGGGCAGCTCGAGGAAGCACCACAAAGTC
GAAGTCACTCAAAGCCTTATAGCGACCAGCCCAGTCCGACGGCCGTACGC
AGAGCGTAACGCCCGTAGTAACAGTGCTGGTAATAGCTTCTTTAGCGTGT
GTCCATAAAAACTGTTTTCGGTGATAATGCTACCATCCTAGTCCAAAATA
TAAAGTTAGTTTGTATGTATGAGACAAATCTTAACACTTCATCATCGAAA
TCGTCAACTACGCATTGTACGTAATTCTACGCAGATGCTCCTAAACGATT
GACAAACTCGCGACCCAACGATGGTGCTAAACCCCGAAACTCCCAAAATT
ATAAAAATTATACGTAGAGCTACCGGTATGAACGCGGCAAAATCTAATAA
CAGCGAGAAAAATGTCAAATTGTTTACAAAAATTATTAAACGTGTACTGT
CTTGGTTTAATGCTCCACATCGAATCGGATCGAGGCACCCCCCTCCCCCA
CCCCTGGCCGGCGTAACATGCTCACAAGCTATGGAAACGATCCTTGACAT
CGCCACCCACACCAATTTCCTAACACGCAGGTAAAGTGCAGCGGGAGCAA
CCCCTGTACAATGTGCAAGAGGAAAGGCCTGGTGTGCAGATTTAGCCGTA
AACAGAAGCCAGGCCCGAAGGTGGGCTTGGGTGACTTGTGTGCCTCTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig125891:2..901+

>mRNA_H-elongata_contig125891.1928.1 ID=mRNA_H-elongata_contig125891.1928.1|Name=mRNA_H-elongata_contig125891.1928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig125891:2..901+ (Himanthalia elongata Himel1 dioecious)
CGGAACTGCGACAATTGTGTGAAGAAGAAGCGGAACTGCGACAATTGTGT
GAAGAAGAAGGTAAAGTGCAGCGGGAGCAACCCCTGTACAATGTGCAAGA
GGAAAGGCCTGGTGTGCAGATTTAGCCGTAAACAGAAGCCAGGCCCGAAG
GTGGGCTTGGGTGACTTGTGTGCCTCTAATGTAAAGTGCAGCGGGAGCAA
CCCCTGTACAATGTGCAAGAGGAAAGGCCTGGTGTGCAGATTTAGCCGTA
AACAGAAGCCAGGCCCGAAGGTGGGCTTGGGTGACTTGTGTGCCTCTAAT
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