mRNA_H-elongata_contig12586.1926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12586.1926.1
Unique NamemRNA_H-elongata_contig12586.1926.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: D7G065_ECTSI (DUF2013 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G065_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.280e-34
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:    1 QALLAANDPFWR--SPNSTSPPPSYKVAVSESTLVAPPSAVIPALSAHPARHHVQPAILHILNEEGYPNGDRELARLCLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLR 381
            + LLAAN PF R  SP +T        AV      A  SAV+PAL  H ARH VQ A+LHI NEEGYPNGD ELARLC VFC DAFE ++ + LFYVNDVKVMVD+++REL+N+P +  LR  Y  LLR
Sbjct:  814 RCLLAANHPFLRHRSPQATRAAADPATAVEVDGDNAAASAVLPALLDHLARHEVQGAVLHIFNEEGYPNGDAELARLCSVFCSDAFEKDRREDLFYVNDVKVMVDIILRELYNLPADDGLRADYLELLR 942
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A6H5JJY8_9PHAE (DUF2013 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.150e-34
Identity = 77/137 (56.20%), Postives = 92/137 (67.15%), Query Frame = 1 
Query:    1 QALLAANDPFWR--SPNSTSPP-------PSYKVAVSESTLVAPPSAVIPALSAHPARHHVQPAILHILNEEGYPNGDRELARLCLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            + LLAAN PF R  SP +TS         P+  V V      A  SAV+PAL  H ARH VQ A+LHI NEEGYPNGD ELARLC VFC DAFE ++ + LFYVNDVKVMVD+++REL+N+P +  LR  Y  LLR+
Sbjct: 1052 RCLLAANHPFLRRRSPLATSAAATAAAADPATAVEVDGDNAAA--SAVLPALLDHLARHEVQGAVLHIFNEEGYPNGDAELARLCSVFCSDAFEKDRREDLFYVNDVKVMVDIILRELYNLPAHDGLRADYLELLRK 1186
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A835YRP0_9STRA (DUF2013 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.790e-9
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  115 VIPALSAHPARHHVQPAILHILNEEGYPNG-DRELARLCLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLL 378
            VI A+  HP   H+Q A+LH+LNE+GYPN  D  L R  +    D  E E   A  + NDV V++D++I +    P +  LR  Y +LL
Sbjct:  250 VIGAIKHHPNSEHLQEAVLHVLNEQGYPNSSDPCLLRSSIALIQDMLEQEGMGAWLHTNDVSVVIDIIITQ----PPDDGLRLEYMQLL 334
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: G5AAR4_PHYSP (DUF2013 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AAR4_PHYSP)

HSP 1 Score: 60.5 bits (145), Expect = 3.550e-8
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARL--CLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P     L  L   L   GD    E A AL +VND KV++D+VIRE  ++P     R HY  LL+R
Sbjct:  196 REHLSGALLHVINSCGCPCPPERLVHLWNALQLFGDILADETASALVFVNDFKVLIDLVIRESTDLPQEDETRLHYMELLQR 277
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A6A4ACQ6_9STRA (DUF2013 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4ACQ6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-7
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARL--CLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P     L  L   L   GD    E A AL ++ND KV+VD+VIRE  ++P     R HY  LL R
Sbjct:  213 REHLSGALLHVINSCGCPCPQERLVHLWNALQLFGDILADETAAALVFLNDFKVLVDLVIRESTDLPQEDVSRLHYMELLER 294
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A6G0PQ36_9STRA (DUF2013 domain-containing protein n=7 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PQ36_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-7
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARL--CLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P     L  L   L   GD    E A AL ++ND KV+VD+VIRE  ++P     R HY  LL R
Sbjct:  213 REHLSGALLHVINSCGCPCPQERLVHLWNALQLFGDILADETAAALVFLNDFKVLVDLVIRESTDLPQEDVSRLHYMELLER 294
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A8J5IQS2_9STRA (DUF2013 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQS2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.080e-7
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARL--CLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P        L   L   GD    E A AL +VND KV++D+VIRE  ++P     R HY  LL R
Sbjct:  208 REHLSGALLHVINSCGCPCPTERAVHLWNALQLFGDILADETASALVFVNDFKVLIDLVIRECADLPQEDITRLHYMELLER 289
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A812V7L5_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V7L5_SYMMI)

HSP 1 Score: 57.0 bits (136), Expect = 2.900e-7
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  151 HVQPAILHILNEEGYPNGDRELARLCLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMP 339
            ++   ++H+LN+ G+P  D      CL  C D   V      FY ND+K++VDV+IREL N+P
Sbjct:  102 NISEGLMHLLNDVGFPEHDVSETLPCLKLCCDLVMVPDFDGFFYSNDIKILVDVIIRELTNLP 164
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BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A6A3N3U0_9STRA (DUF2013 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N3U0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.290e-7
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARL--CLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P  +  L  L   L    D    E A AL ++ND KV+VD+VIRE  ++P     R HY  LL R
Sbjct:  213 REHLSGALLHVINSCGCPCPEERLVHLWNALQLFSDILADETAAALVFLNDFKVLVDLVIRESTDLPQEDVSRLHYMELLER 294
[Close]
BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Match: A0A662Y025_9STRA (DUF2013 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y025_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.580e-7
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:  145 RHHVQPAILHILNEEGYPNGDRELARLCLVFCGDAFEVEKAKALFYVNDVKVMVDVVIRELFNMPTNGALRKHYARLLRR 384
            R H+  A+LH++N  G P   R          GD    + A AL YVND KV+VD+VIRE  ++P   A R H+  LL R
Sbjct:  245 REHLSGAMLHVINSCGCPVAVR--------LFGDILADDAASALVYVNDFKVLVDLVIRECTDLPQEDATRLHFLTLLER 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12586.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G065_ECTSI1.280e-3458.14DUF2013 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJY8_9PHAE6.150e-3456.20DUF2013 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YRP0_9STRA3.790e-940.45DUF2013 domain-containing protein n=1 Tax=Tribonem... [more]
G5AAR4_PHYSP3.550e-841.46DUF2013 domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A4ACQ6_9STRA1.080e-741.46DUF2013 domain-containing protein n=2 Tax=Phytopht... [more]
A0A6G0PQ36_9STRA1.120e-741.46DUF2013 domain-containing protein n=7 Tax=Phytopht... [more]
A0A8J5IQS2_9STRA2.080e-740.24DUF2013 domain-containing protein n=1 Tax=Phytopht... [more]
A0A812V7L5_SYMMI2.900e-739.68Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A6A3N3U0_9STRA3.290e-740.24DUF2013 domain-containing protein n=1 Tax=Phytopht... [more]
A0A662Y025_9STRA8.580e-741.25DUF2013 domain-containing protein n=1 Tax=Nothophy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12586contigH-elongata_contig12586:315..1722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog67593.Physo157585
EggNOG free text desc.Protein of unknown function (DUF2013)
EggNOG OGs2A3ZS@1,2RY6D@2759,3QF0I@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2013
Ec32 orthologEc-05_003970.1
Exons3
Model size387
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12586.1926.1prot_H-elongata_contig12586.1926.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12586 315..1722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.5590384-CDS-H-elongata_contig12586:314..5041622929744.5590384-CDS-H-elongata_contig12586:314..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 315..504 +
1691679140.7385948-CDS-H-elongata_contig12586:314..5041691679140.7385948-CDS-H-elongata_contig12586:314..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 315..504 +
1622929744.5720658-CDS-H-elongata_contig12586:1027..11341622929744.5720658-CDS-H-elongata_contig12586:1027..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 1028..1134 +
1691679140.7553194-CDS-H-elongata_contig12586:1027..11341691679140.7553194-CDS-H-elongata_contig12586:1027..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 1028..1134 +
1622929744.585798-CDS-H-elongata_contig12586:1632..17221622929744.585798-CDS-H-elongata_contig12586:1632..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 1633..1722 +
1691679140.7643409-CDS-H-elongata_contig12586:1632..17221691679140.7643409-CDS-H-elongata_contig12586:1632..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12586 1633..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12586.1926.1

>prot_H-elongata_contig12586.1926.1 ID=prot_H-elongata_contig12586.1926.1|Name=mRNA_H-elongata_contig12586.1926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
QALLAANDPFWRSPNSTSPPPSYKVAVSESTLVAPPSAVIPALSAHPARH
HVQPAILHILNEEGYPNGDRELARLCLVFCGDAFEVEKAKALFYVNDVKV
MVDVVIRELFNMPTNGALRKHYARLLRR*
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mRNA from alignment at H-elongata_contig12586:315..1722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12586.1926.1 ID=mRNA_H-elongata_contig12586.1926.1|Name=mRNA_H-elongata_contig12586.1926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1408bp|location=Sequence derived from alignment at H-elongata_contig12586:315..1722+ (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGCTCGCAGCGAACGATCCGTTCTGGAGATCTCCGAACTCTAC
GTCACCGCCACCATCATACAAGGTGGCCGTTTCCGAATCGACGCTGGTTG
CGCCACCATCTGCGGTCATCCCCGCGCTGTCCGCTCACCCCGCGAGGCAC
CACGTGCAGCCGGCGATCTTGCACATTCTCAACGAAGAGGGTGAGATATA
CGTCTCCTGAGCTTTGCCTTGCGTCGCGTCGGGTCATATCGCCTGGTGTA
GCGCCATTCCGTTTGGTTAGTGTCGTAGTTAGTGTCGTAAGATCATCCGC
GCGGTGAAGACGAAATATTGTTGCAGATAGGGGACGCGCGCATGGCTTCT
GAACTCAACCCGTGTATTTTTCTTCTTGATCCCAGTCCGTTTTGGTTGCG
TGCTGACGTCGCTTAACGTTAATTATGGAAGGACTATGATCCACGTTAGA
GGGAGAATGGGGGGGCCGCATGACCCCGTGCTTTTTTATTTCGATTCACT
TATCAATTAATCTCCTTTAAATGGGTCGTGGCCATGCCATACTCTGCCGT
TTTAATGATTGTTTTATCACGCCATGCGAAGGCTACCCTGAAGGCACACA
CCACCCGCGATGTTTGATGTTTGATGTTTGACTCCGGAGCCCCAGTGATC
AACGACGAAATATGGTTTTGATGGAGGCGTTTTCGGTGCTATTTTAACGG
GATTCGTTTGCAGGCTATCCCAACGGCGACCGGGAACTGGCGAGGCTTTG
TCTGGTGTTTTGCGGCGACGCCTTCGAAGTTGAAAAGGCGAAGGCGTTGT
TCTACGTGAACGACGTCAAGGTGCGGGAATGTAGTGTACTGGTGCTGATA
GTTTTGGTCTCTAGGCATTGCTTTGCCTGCCGTGGCGCGCACCGCTCAGA
CCTAACTGCATATCTCAGAGGAATCAGTGCGTGGCGGCAGCGCGGGGGTC
GGCGCAAGCGATATGCTCAATAGGTTCTGGCGTTGGTTTTATGTACGTAA
AATAAGAAGCCGTGTGATATCACGCATTGTGTTTTAGGGTGTCACCAAGG
AACGCGCGTGACGATATCGTGCTAGGCATCTACAGGTGCCCCAGTGGTTA
CGCGGCCCGAGGTCAAACTATCAAGCAGGGCGCGCGCACCCTCGGCATGC
GCGCACTTCGCGTGGTTTTATCTTTTTGATTACTGCTTTACCAATCACTC
TTCATTCTCTATACTCTATACTGTATACACCGCTGATAAAATATGCTCAC
ACTGACATATTAAATTGTGCAGTTCGTGTTTCGACAATTTCGCCCGACGG
TGCGGTGCGTTTGAACAGGTCATGGTGGACGTGGTCATTCGGGAGCTCTT
CAACATGCCAACCAACGGCGCCCTCCGGAAGCACTACGCTCGCTTGCTGC
GGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig12586:315..1722+

>mRNA_H-elongata_contig12586.1926.1 ID=mRNA_H-elongata_contig12586.1926.1|Name=mRNA_H-elongata_contig12586.1926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig12586:315..1722+ (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGCTCGCAGCGAACGATCCGTTCTGGAGATCTCCGAACTCTAC
GTCACCGCCACCATCATACAAGGTGGCCGTTTCCGAATCGACGCTGGTTG
CGCCACCATCTGCGGTCATCCCCGCGCTGTCCGCTCACCCCGCGAGGCAC
CACGTGCAGCCGGCGATCTTGCACATTCTCAACGAAGAGGCAGGCGCTGC
TCGCAGCGAACGATCCGTTCTGGAGATCTCCGAACTCTACGTCACCGCCA
CCATCATACAAGGTGGCCGTTTCCGAATCGACGCTGGTTGCGCCACCATC
TGCGGTCATCCCCGCGCTGTCCGCTCACCCCGCGAGGCACCACGTGCAGC
CGGCGATCTTGCACATTCTCAACGAAGAGGGCTATCCCAACGGCGACCGG
GAACTGGCGAGGCTTTGTCTGGTGTTTTGCGGCGACGCCTTCGAAGTTGA
AAAGGCGAAGGCGTTGTTCTACGTGAACGACGTCAAGGCTATCCCAACGG
CGACCGGGAACTGGCGAGGCTTTGTCTGGTGTTTTGCGGCGACGCCTTCG
AAGTTGAAAAGGCGAAGGCGTTGTTCTACGTGAACGACGTCAAGGTCATG
GTGGACGTGGTCATTCGGGAGCTCTTCAACATGCCAACCAACGGCGCCCT
CCGGAAGCACTACGCTCGCTTGCTGCGGAGGTAAGTCATGGTGGACGTGG
TCATTCGGGAGCTCTTCAACATGCCAACCAACGGCGCCCTCCGGAAGCAC
TACGCTCGCTTGCTGCGGAGGTAA
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