mRNA_H-elongata_contig125743.1921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125743.1921.1
Unique NamemRNA_H-elongata_contig125743.1921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6G0N8R7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0N8R7_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.490e-48
Identity = 117/337 (34.72%), Postives = 164/337 (48.66%), Query Frame = 1
Query:   13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL-------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFG---VTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGG 954
            PTT  +A AS +  QW+ A+  E+      G W +V R      +G R VF +K D  GR+ +YK RL                   LD D A+L +E+++ +Y+E+P    ++R     L KA+YGL  A   W K         GF+    D CV+ +   +G +       VDDM++A+ T  +       L + F +K++G A + LG     D  AGT K    +YI  V E FG         P AAG K LSK+ SP TDAE    R  PYR ++  L++  T TRPDI+F   Q ++F +NP   HW AA + L+YL  T   GI Y G
Sbjct:  504 PTTHAQAMASDDAEQWREAMDAELLSHERNGTWTLVPRGTASRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLY--VDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHG 837          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 178 bits (451), Expect = 1.530e-46
Identity = 116/360 (32.22%), Postives = 174/360 (48.33%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAK-GFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGGE 957
            EP T+ EAQA+ EWP+WKRA+  E+      G +   + P G+  +G R V++ K D+DGRI +YK RL+                                          DV  AYL A+++E IY+  P  Y +    +  L+KA+YGL  AG  W       L A  GFQR   DPCV+ +    G+ +      VDDM   + T    +     L   + + D+G     LG   ++DR   T    Q QYIQTV +RF +   +  +      +     P+ DA++ E + +PY+ ++ +LM+A   TRPDIS+A    ++++  PG THW AA++ L+YL  T+D GI Y G+
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMH--VDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPE-DADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGK 370          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 171 bits (433), Expect = 5.740e-44
Identity = 120/366 (32.79%), Postives = 174/366 (47.54%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELP--EAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHG-IVVXXXXXXVDDMLVASATKRDEEQAVM----DLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKT---SIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYG 951
            EP ++ EA  S +WPQW++AI +EM        + +VE P+   V+G++ VF+ K + +G+I+ YK RL                                          +DV  AYL A++EE I+++ P  +A R     V LL+ A+YGL  +G  W KK    L+  G  RS VD CVF +      V       VDD  +A         AV+    ++   F + D+GE  + LG    +DR A T    Q  YI  +  RF +      S P   G   LS    P T  E E+ R +PYR+ + +LM+A   TRPDI+FA    ++F  NPG  HW+AA++ L+YL  TR+  +TYG
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNN-----AVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGA-ILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYG 1318          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN)

HSP 1 Score: 169 bits (427), Expect = 3.540e-43
Identity = 116/357 (32.49%), Postives = 164/357 (45.94%), Query Frame = 1
Query:   13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSI---PSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            P T  EA AS+E  +W+RA+  E++  +  G W +V R      +G R VF +K D +GR+ +YK RL                                          LD D A+L + +   +Y+++P    ++      L KA+YGL  A   W K         GF+    D CV+        V      VDDM++A+ T+ +  +    L S F +K++GEA + LG     DR  GT    Q +YI  + ERF      +   P AA  K LSK  SP T+ E  E    PYR ++  LM+  T TRPDI++   Q A+F ++PG  HWKAA + LQYL  TR  GI Y
Sbjct:  827 PNTYAEAIASNEAGEWRRAMQSELNSHSRNGTWTLVPRGTTTRSIGCRWVFTKKRDENGRVIRYKARLVAQGFKQKFGIDFFETYSPVANMNSIRAVLAVCVTCGYIMEQLDADTAFLNSCLVNLVYMDVPLGLENAEGMKCNLLKAIYGLKQAASAWNKTIHRVFLQNGFKCCGADQCVYVKRSKNAFVYVCLY-VDDMIIAAKTRDEIREVKNALKSAFKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLK-LSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGIVY 1181          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6G0MA39_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MA39_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.520e-43
Identity = 96/256 (37.50%), Postives = 134/256 (52.34%), Query Frame = 1
Query:  199 KYKCRLLDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFG---VTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGG 954
            +Y+   LD D A+L +E+++ +Y+E+P    ++R     L KA+YGL+ A   W K         GF+    D CV+ +   +G +       VDDM++A  T  D  +    L + F +K++G A   L      D  AGT K  Q +YI  V ERFG         P AAG K LSK+ SP TDAE    R  PYR ++  L++  T TRPDI+F A Q ++F +NPG  HW AA + L+YL   R  GI Y G
Sbjct:   15 EYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLMQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLY--VDDMIIAVKTSEDIREVKDALKNAFKMKELGPAKSILAMEIDHDMTAGTLKIKQTRYIDDVVERFGQENAKPVDDPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQHWNAAVRVLRYLKAARQHGIIYQG 267          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.650e-42
Identity = 114/360 (31.67%), Postives = 178/360 (49.44%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            ++ EP +  EAQ S     W+ A + E++G    G + + V+ P G  V+  R VFK K D  G+I K K RL+                                          D++ A++++E++  +++++P       ++V  L K++YGL  A   + K+   EL+  GF++S  DPCV R ++   VV      VDD+L A  TK   E  V  L    P K++GE  ++LGC   +DR AGT +  Q  YI++V ERF + +TS IP++     L+  D  ++  E E    +P+R++V +LMW  + TR DIS A    A+ +  P  +HWKAAQK L YL  T  L + +
Sbjct:  885 VESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPAS-----LNNDD--RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1236          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.190e-42
Identity = 114/356 (32.02%), Postives = 173/356 (48.60%), Query Frame = 1
Query:   13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVER-PKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            P +  EAQ S     W+ A++ E++G    G + +  + P G  V+  R VFK K D  G+I K K RL+                                          D++ A++++E++  ++++LP        +V  L K++YGL  A   + K+   EL+  GF++S  DPCV R ++   VV      VDD+L A  TK   E  V  L    P K++GE  ++LGC   +DR AGT +  Q  YI++V ERF V +TS IP+       S ++  ++  E E    +P+R++V +LMW    TRPDIS A    A+ +  P  +HWKAAQK L YL  T  L + +
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1062          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.220e-41
Identity = 113/356 (31.74%), Postives = 172/356 (48.31%), Query Frame = 1
Query:   13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVER-PKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            P +  EAQ S     W+ A++ E++G    G + +  + P    V+  R VFK K D  G+I K K RL+                                          D++ A++++E++  ++++LP        +V  L K++YGL  A   + K+   EL+  GF++S  DPCV R ++   VV      VDD+L A  TK   E  V  L    P K++GE  ++LGC   +DR AGT +  Q  YI++V ERF V +TS IP+       S ++  ++  E E    +P+R++V +LMW    TRPDIS A    A+ +  P  +HWKAAQK L YL  T  L + +
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 795          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.840e-41
Identity = 113/360 (31.39%), Postives = 177/360 (49.17%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            ++ EP +  EAQ S     W+ A + E++G    G + + V+ P G  V+  R VFK K D  G+I K K RL+                                          D++ A++++E++  +++++P       ++V  L K++YGL  A   + K+   EL+  GF++S  DPCV   ++   VV      VDD+L A  TK   E  V  L    P K++GE  ++LGC   +DR AGT +  Q  YI++V ERF + +TS IP++     L+  D  ++  E E    +P+R++V +LMW  + TR DIS A    A+ +  P  +HWKAAQK L YL  T  L + +
Sbjct:  675 VESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPAS-----LNNDD--RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1026          
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.690e-41
Identity = 110/363 (30.30%), Postives = 168/363 (46.28%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSI----PSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
            + PEP +  EA+ S     W  A++ E +G    G + + V+ P G  V+  R VFK K D  G+I K K RL                                          LD++ A+++ +++  ++++LP        +V  L K++YGL  A   +  +   +L+  GF++S  DPCV R ++   V+      VDD+L A + K   E  V  L    P K++GE  ++LGC   +DR AGT +  Q  YI++V ERF V +TS     P+   R  +          E EE   +P+R++V   MW  + TRPDIS      A+ +  P  +HWKAAQK L YL  T  L + +
Sbjct:  163 VQPEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGS-KSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVM----------ENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNF 514          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0N8R7_9STRA3.490e-4834.72Integrase catalytic domain-containing protein n=3 ... [more]
A0A1M2V3W8_TRAPU1.530e-4632.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GQU1_9APHY5.740e-4432.79Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
Q572I3_PHYIN3.540e-4332.49Putative polyprotein n=1 Tax=Phytophthora infestan... [more]
A0A6G0MA39_9STRA4.520e-4337.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE1.650e-4231.67Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE2.190e-4232.02Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KKK1_9PHAE1.220e-4131.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3I1_9PHAE1.840e-4131.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE2.690e-4130.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125743contigH-elongata_contig125743:4..1089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size960
Cds size939
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125743.1921.1prot_H-elongata_contig125743.1921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125743 4..1068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.0456133-CDS-H-elongata_contig125743:3..7471622929744.0456133-CDS-H-elongata_contig125743:3..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125743 4..747 -
1691679140.49811-CDS-H-elongata_contig125743:3..7471691679140.49811-CDS-H-elongata_contig125743:3..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125743 4..747 -
1622929744.0660393-CDS-H-elongata_contig125743:873..10681622929744.0660393-CDS-H-elongata_contig125743:873..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125743 874..1068 -
1691679140.5157275-CDS-H-elongata_contig125743:873..10681691679140.5157275-CDS-H-elongata_contig125743:873..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125743 874..1068 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.082898-UTR-H-elongata_contig125743:1068..10891622929744.082898-UTR-H-elongata_contig125743:1068..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125743 1069..1089 -
1691679140.5260522-UTR-H-elongata_contig125743:1068..10891691679140.5260522-UTR-H-elongata_contig125743:1068..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125743 1069..1089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125743.1921.1

>prot_H-elongata_contig125743.1921.1 ID=prot_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKR
KIDNDGRIKKYKCRLLDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLK
KAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVVIIVV
YVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGT
PKFDQHQYIQTVKERFGVTKTSIPSAAGRKALSKSDSPQTDAEVEERRQI
PYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLW
HTRDLGITYGGEP
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mRNA from alignment at H-elongata_contig125743:4..1089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125743.1921.1 ID=mRNA_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-elongata_contig125743:4..1089- (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTG GCCACAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTC GAGGTGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGT ACGAGAGTAGTTTTCAAGCGCAAAATCGACAATGATGGAAGGATCAAGAA GTATAAATGTCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATAC ACTACGAGGAATCCTCCTCTCCCATTCCTGCGCAGGCCAGCATTAGAATG GTACTGGGCATGATCGCGGCTCTCGACTGGGAGGCGCGGCAGCTAGACGT CGACATGGCCTACCTTGAGGCCGAAATGGAGGAGGGGATCTACGTTGAGC TCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAG GCAATGTACGGACTCGTCCACGCCGGGTTGCTGTGGCAAAAAAAGTTCGG GATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGTCGATCCATGCG TGTTCCGGGTGATTCTCCACGGGATAGTGGTAGTCATCATCGTGGTCTAC GTCGACGACATGCTAGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGC GGTGATGGACCTGTGCTCCTGTTTCCCCGTCAAGGATATGGGGGAGGCTT CATATTACCTGGGATGCCACACCACGCAGGACCGGAACGCCGGGACACCG AAGTTCGACCAGCATCAGTACATACAGACTGTGAAGGAACGTTTTGGCGT GACGAAGACCAGCATCCCGTCTGCGGCAGGACGAAAAGCCCTTTCAAAAT CAGACAGCCCGCAAACGGATGCAGAGGTTGAAGAAAGGCGCCAGATTCCC TACCGAAAAATCGTTGAGGCCCTAATGTGGGCAGGGACGATGACCAGGCC CGACATTTCATTCGCTGCGCACCAACAAGCAAAATTCAACGACAACCCGG GACCGACGCACTGGAAGGCAGCCCAGAAAGCGCTGCAATATTTATGGCAC ACTCGGGACCTCGGAATCACCTACGGAGGGGAACCG
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Coding sequence (CDS) from alignment at H-elongata_contig125743:4..1089-

>mRNA_H-elongata_contig125743.1921.1 ID=mRNA_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig125743:4..1089- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTGCTCGAGGTGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACGGTGTTGGGTACGAGAGTAGTTTTCAAGCGC
AAAATCGACAATGATGGAAGGATCAAGAAGTATAAATGTCGCCTCATGGG
CGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGATCGCGC
GCGAGATGGATGGGCAAACTGCTCGAGGTGTGTGGCAGGTGGTGGAGCGC
CCAAAAGGGAAGACGGTGTTGGGTACGAGAGTAGTTTTCAAGCGCAAAAT
CGACAATGATGGAAGGATCAAGAAGTATAAATGTCGCCTCCTAGACGTCG
ACATGGCCTACCTTGAGGCCGAAATGGAGGAGGGGATCTACGTTGAGCTC
CCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGC
AATGTACGGACTCGTCCACGCCGGGTTGCTGTGGCAAAAAAAGTTCGGGA
TCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGTCGATCCATGCGTG
TTCCGGGTGATTCTCCACGGGATAGTGGTAGTCATCATCGTGGTCTACGT
CGACGACATGCTAGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGG
TGATGGACCTGTGCTCCTGTTTCCCCGTCAAGGATATGGGGGAGGCTTCA
TATTACCTGGGATGCCACACCACGCAGGACCGGAACGCCGGGACACCGAA
GTTCGACCAGCATCAGTACATACAGACTGTGAAGGAACGTTTTGGCGTGA
CGAAGACCAGCATCCCGTCTGCGGCAGGACGAAAAGCCCTTTCAAAATCA
GACAGCCCGCAAACGGATGCAGAGGTTGAAGAAAGGCGCCAGATTCCCTA
CCGAAAAATCGTTGAGGCCCTAATGTGGGCAGGGACGATGACCAGGCCCG
ACATTTCATTCGCTGCGCACCAACAAGCAAAATTCAACGACAACCCGGGA
CCGACGCACTGGAAGGCAGCCCAGAAAGCGCTGCAATATTTATGGCACAC
TCGGGACCTCGGAATCACCTACGGAGGGGAACCGCTAGACGTCGACATGG
CCTACCTTGAGGCCGAAATGGAGGAGGGGATCTACGTTGAGCTCCCGGAG
GCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTA
CGGACTCGTCCACGCCGGGTTGCTGTGGCAAAAAAAGTTCGGGATCGAGC
TCGAGGCGAAGGGTTTCCAGAGATCTCAAGTCGATCCATGCGTGTTCCGG
GTGATTCTCCACGGGATAGTGGTAGTCATCATCGTGGTCTACGTCGACGA
CATGCTAGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGATGG
ACCTGTGCTCCTGTTTCCCCGTCAAGGATATGGGGGAGGCTTCATATTAC
CTGGGATGCCACACCACGCAGGACCGGAACGCCGGGACACCGAAGTTCGA
CCAGCATCAGTACATACAGACTGTGAAGGAACGTTTTGGCGTGACGAAGA
CCAGCATCCCGTCTGCGGCAGGACGAAAAGCCCTTTCAAAATCAGACAGC
CCGCAAACGGATGCAGAGGTTGAAGAAAGGCGCCAGATTCCCTACCGAAA
AATCGTTGAGGCCCTAATGTGGGCAGGGACGATGACCAGGCCCGACATTT
CATTCGCTGCGCACCAACAAGCAAAATTCAACGACAACCCGGGACCGACG
CACTGGAAGGCAGCCCAGAAAGCGCTGCAATATTTATGGCACACTCGGGA
CCTCGGAATCACCTACGGAGGGGAACCG
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