mRNA_H-elongata_contig125712.1919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125712.1919.1
Unique NamemRNA_H-elongata_contig125712.1919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.590e-45
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLGEG 237
            RRRLPVVMVRLKMSETLTEA T+IEQGHVRVGPHAVTDPA+LVTR+MEDFVTWVDGSKIKRAIKTYEDK+DDFDLLGEG
Sbjct:  106 RRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
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BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.750e-38
Identity = 65/79 (82.28%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLGEG 237
            RRRLPVVMVR KMSETL EA TFIE GH+RVGP+ VTDPA+LVTR MEDFVTWVD SKIKR I  Y DKLDDFDLLGEG
Sbjct:  106 RRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184
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BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: K3XB78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB78_GLOUD)

HSP 1 Score: 129 bits (325), Expect = 1.970e-36
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 231
            RRRLPVVMVR+KM+E + EAATF+EQGHVRVGP  VTDPAYLVTR+MEDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:  106 RRRLPVVMVRVKMAENIKEAATFVEQGHVRVGPSVVTDPAYLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A836BYG4_9CHLO (S4 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYG4_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 3.760e-36
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 228
            RRRL VVMVRLKM+ETL EAATFIEQGHVRVGP  VTDPAY VTRNMEDFVTWVD SK+KR +  Y DKLDDFDLL
Sbjct:   22 RRRLAVVMVRLKMAETLREAATFIEQGHVRVGPTTVTDPAYHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDFDLL 97
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BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A3M6VSP1_9STRA (S4 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSP1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.990e-36
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 231
            RRRLPVVMVR+KM+E+L EA TF+EQGHVRVGP  VTDPA+LVTR MEDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   23 RRRLPVVMVRVKMAESLKEATTFVEQGHVRVGPTVVTDPAFLVTRPMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 99
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A7S3HSU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSU8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.170e-36
Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 231
            RRRLPVVMVRLKMSE L EA TFIEQGHVRVGP+ +TDPA+LVTR  ED+VTWVD SKIKR I  Y DKLDDFDLLG
Sbjct:  107 RRRLPVVMVRLKMSENLKEATTFIEQGHVRVGPNVITDPAFLVTRTFEDYVTWVDSSKIKRTIMKYNDKLDDFDLLG 183
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 127 bits (320), Expect = 1.130e-35
Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 231
            RRRLPVVMVRLKMSET+ EA TFIE GHVRVGPH VTDPA+LV R MEDF+TWVD SKIKR I  Y DKLDD+DLLG
Sbjct:  106 RRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.600e-35
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 231
            RRRLPVVMVR+KM+ETL EA TFIEQGHVRVGP  VTDP +LVTR+ EDF+TWVD SKIKRA+  Y DKLDDFDLLG
Sbjct:  106 RRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A397IA55_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IA55_9GLOM)

HSP 1 Score: 127 bits (318), Expect = 2.200e-35
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 228
            RRRLP+VM RLKM+ET+ EA TFIEQGH+RVGP  +TDPAYLVTRN+EDFVTWVD SKIKR I  Y DKLDDFDLL
Sbjct:  107 RRRLPIVMCRLKMAETVKEAVTFIEQGHIRVGPETITDPAYLVTRNLEDFVTWVDTSKIKRKIMKYNDKLDDFDLL 182
[Close]
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A061RGH8_9CHLO (U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGH8_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 2.260e-35
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 RRRLPVVMVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 228
            RRRL VVM RLKMSETL EAATFIEQGHVRVGP  VTDPA+LVTRNMEDFVTWVD SKIKR +  Y DKLDD+DLL
Sbjct:  106 RRRLAVVMTRLKMSETLKEAATFIEQGHVRVGPDTVTDPAFLVTRNMEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI1.590e-4593.67Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA8.750e-3882.28Small nucleolar ribonucleoprotein U3 component n=1... [more]
K3XB78_GLOUD1.970e-3680.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A836BYG4_9CHLO3.760e-3682.89S4 domain-containing protein n=1 Tax=Edaphochlamys... [more]
A0A3M6VSP1_9STRA3.990e-3679.22S4 domain-containing protein n=1 Tax=Peronospora e... [more]
A0A7S3HSU8_9STRA8.170e-3680.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6S9JYI8_HETAK1.130e-3580.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TBD6_9STRA1.600e-3579.22Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
A0A397IA55_9GLOM2.200e-3578.95Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A061RGH8_9CHLO2.260e-3582.89U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125712contigH-elongata_contig125712:169..653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7FQ94
Preferred nameIMP3
KEGG koko:K14560
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG0522@1,KOG4655@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125712.1919.1prot_H-elongata_contig125712.1919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125712 190..653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.8765361-UTR-H-elongata_contig125712:168..1891622929743.8765361-UTR-H-elongata_contig125712:168..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125712 169..189 +
1691679140.4287066-UTR-H-elongata_contig125712:168..1891691679140.4287066-UTR-H-elongata_contig125712:168..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125712 169..189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.8926082-CDS-H-elongata_contig125712:189..2881622929743.8926082-CDS-H-elongata_contig125712:189..288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125712 190..288 +
1691679140.438838-CDS-H-elongata_contig125712:189..2881691679140.438838-CDS-H-elongata_contig125712:189..288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125712 190..288 +
1622929743.9096491-CDS-H-elongata_contig125712:533..6531622929743.9096491-CDS-H-elongata_contig125712:533..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125712 534..653 +
1691679140.4470205-CDS-H-elongata_contig125712:533..6531691679140.4470205-CDS-H-elongata_contig125712:533..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125712 534..653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125712.1919.1

>prot_H-elongata_contig125712.1919.1 ID=prot_H-elongata_contig125712.1919.1|Name=mRNA_H-elongata_contig125712.1919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGS
KIKRAIKTYEDKLDDFDLLGEG*
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mRNA from alignment at H-elongata_contig125712:169..653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125712.1919.1 ID=mRNA_H-elongata_contig125712.1919.1|Name=mRNA_H-elongata_contig125712.1919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=485bp|location=Sequence derived from alignment at H-elongata_contig125712:169..653+ (Himanthalia elongata Himel1 dioecious)
AGGCGACGATTACCGGTCGTGATGGTAAGGCTTAAAATGTCCGAAACGCT
CACGGAGGCCGCGACGTTCATAGAGCAGGGGCACGTGAGGGTTGGCCCTC
ATGCAGTCACCGATCCGGCGGTAAGCGAAGCGCGTGGAGACGGAGTGAAG
GCGGATTCGTTTGCTTATACTGAAATTGTGGTGGCCTTCGGTCATCCACT
TGGCTACGGATTGCAGCAGCTCCTTTGGATAGTCTATGCGATTTTGCCAT
TACTAGCCAGGGTTCACTATCTTTTCGGTACTCAATTGCAGGGCGCGTAC
AGCCTCGTCTCAATCGCGTGACTTCCGCCCGCCCCTCGTCGCCACCGCCT
TGCATCCTCCCACAGTACTTGGTCACTCGTAACATGGAGGATTTCGTCAC
GTGGGTGGACGGTTCGAAGATCAAGCGGGCCATCAAGACCTACGAGGATA
AGCTGGACGATTTTGACCTCTTGGGTGAAGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig125712:169..653+

>mRNA_H-elongata_contig125712.1919.1 ID=mRNA_H-elongata_contig125712.1919.1|Name=mRNA_H-elongata_contig125712.1919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig125712:169..653+ (Himanthalia elongata Himel1 dioecious)
ATGGTAAGGCTTAAAATGTCCGAAACGCTCACGGAGGCCGCGACGTTCAT
AGAGCAGGGGCACGTGAGGGTTGGCCCTCATGCAGTCACCGATCCGGCGA
TGGTAAGGCTTAAAATGTCCGAAACGCTCACGGAGGCCGCGACGTTCATA
GAGCAGGGGCACGTGAGGGTTGGCCCTCATGCAGTCACCGATCCGGCGTA
CTTGGTCACTCGTAACATGGAGGATTTCGTCACGTGGGTGGACGGTTCGA
AGATCAAGCGGGCCATCAAGACCTACGAGGATAAGCTGGACGATTTTGAC
CTCTTGGGTGAAGGATAGTACTTGGTCACTCGTAACATGGAGGATTTCGT
CACGTGGGTGGACGGTTCGAAGATCAAGCGGGCCATCAAGACCTACGAGG
ATAAGCTGGACGATTTTGACCTCTTGGGTGAAGGATAG
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