mRNA_H-elongata_contig125639.1915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125639.1915.1
Unique NamemRNA_H-elongata_contig125639.1915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A251UPJ4_HELAN (Putative HAT dimerization domain, Ribonuclease H-like domain protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UPJ4_HELAN)

HSP 1 Score: 62.8 bits (151), Expect = 5.360e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKDL 225
            DWW TYG    P+LA+VA +  S+  +S+ +ERNWS Y  +      R+  +RA KLVF+ SN+RLQ + L
Sbjct:  126 DWWGTYGS-ETPELAEVAKKVLSQPISSSLAERNWSTYSYIHNVKRNRLNCDRADKLVFIHSNIRLQSRFL 195          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: UPI000B8FCB81 (uncharacterized protein LOC110864233 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8FCB81)

HSP 1 Score: 63.5 bits (153), Expect = 5.510e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKDL 225
            DWW TYG    P+LA+VA +  S+  +S+ +ERNWS Y  +      R+   RA KLVF+ SN+RLQ + L
Sbjct:  442 DWWGTYGS-ETPELAEVAKKVLSQPISSSSAERNWSTYSYIHNVKRNRLNCNRADKLVFIHSNIRLQSRFL 511          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A6L2KIL8_TANCI (HAT dimerization domain, ribonuclease H-like domain protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KIL8_TANCI)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-9
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRL 210
            DWW T+G    P+LA++  +  S+  +S+ ++RNWS Y  +      R+ P+RA KLVFV SN+RL
Sbjct:  143 DWWSTHGS-ETPELAEIPKKVLSQPASSSSADRNWSTYSFIHSVKRNRLNPQRADKLVFVHSNIRL 207          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A2K3K1Y4_TRIPR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K1Y4_TRIPR)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-9
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKDLPK 231
             WW  YG    P+L K+AIR  S+  +++G ERNWS++  +  +   R+  ++   LVFVR NLRLQ+++  K
Sbjct:    2 QWWEMYGTEA-PNLKKLAIRILSQTCSASGCERNWSVFEHIHSKKRNRLEHQKLNDLVFVRYNLRLQNRNQKK 73          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A6N2M2F6_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2M2F6_SALVM)

HSP 1 Score: 61.6 bits (148), Expect = 2.650e-9
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    7 PADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKDL 225
            P  WW  +G +  P+L K AIR  S+  ++ G ERNWS++  +  +   R+  +R   LVFVR NL++Q ++L
Sbjct:  535 PVSWWEQFGNV-TPELQKFAIRVLSQCCSATGCERNWSVFEHIHSKKRNRLEHKRLNDLVFVRYNLKIQQRNL 606          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A6A5M7K7_LUPAL (Phosphopyruvate hydratase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7K7_LUPAL)

HSP 1 Score: 61.6 bits (148), Expect = 2.670e-9
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 IPPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDK 219
            + P  WW TYG    P+L K+A+R  S+  +++G ERNWS++  +      R+  ++   LVFVR NLRLQ +
Sbjct:  674 VMPDQWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 745          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A6A5MXA4_LUPAL (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXA4_LUPAL)

HSP 1 Score: 59.3 bits (142), Expect = 4.540e-9
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDK 219
             WW TYG    P+L K+A+R  S+  +++G ERNWS++  +      R+  ++   LVFVR NLRLQ +
Sbjct:    4 QWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 71          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: UPI00092F4EA0 (uncharacterized protein LOC109333975 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F4EA0)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-8
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKD 222
             WW TYG    P+L K+A+R  S+  +++G ERNWS++  +      R+  ++   LVFVR NLRLQ ++
Sbjct:  248 QWWETYG-CRAPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRN 316          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A6A5N2L1_LUPAL (BED-type domain-containing protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5N2L1_LUPAL)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-8
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 IPPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDK 219
            + P  WW TY +   P+L K+A+R  S+  +++G ERNWS++  +      R+  ++   LVFVR NLRLQ +
Sbjct:  433 VMPDQWWETY-RCCTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLENQKLNDLVFVRYNLRLQQR 504          
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Match: A0A2Z6NFM0_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NFM0_TRISU)

HSP 1 Score: 58.2 bits (139), Expect = 4.390e-8
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    7 PADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESHARMGPERARKLVFVRSNLRLQDKDLPK 231
            P  WW  YG    P+L K+AI   S+  +++G ERNWS++  +  +   R+  ++   LVFVR NLRLQ+++  K
Sbjct:  510 PDQWWEMYGTEA-PNLKKLAIWILSQTCSASGCERNWSVFEHIQSKKRNRLEHQKLNDLVFVRYNLRLQNRNKKK 583          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125639.1915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251UPJ4_HELAN5.360e-1045.07Putative HAT dimerization domain, Ribonuclease H-l... [more]
UPI000B8FCB815.510e-1045.07uncharacterized protein LOC110864233 n=1 Tax=Helia... [more]
A0A6L2KIL8_TANCI1.490e-942.42HAT dimerization domain, ribonuclease H-like domai... [more]
A0A2K3K1Y4_TRIPR1.920e-939.73Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6N2M2F6_SALVM2.650e-938.36Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A6A5M7K7_LUPAL2.670e-939.73Phosphopyruvate hydratase n=1 Tax=Lupinus albus Ta... [more]
A0A6A5MXA4_LUPAL4.540e-940.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lu... [more]
UPI00092F4EA01.220e-840.00uncharacterized protein LOC109333975 n=1 Tax=Lupin... [more]
A0A6A5N2L1_LUPAL1.260e-838.36BED-type domain-containing protein n=2 Tax=Lupinus... [more]
A0A2Z6NFM0_TRISU4.390e-838.67Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125639contigH-elongata_contig125639:584..814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog3694.POPTR_0002s07100.1
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493,4JRQZ@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.3572812-CDS-H-elongata_contig125639:583..8141622929742.3572812-CDS-H-elongata_contig125639:583..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125639 584..814 -
1691679140.224889-CDS-H-elongata_contig125639:583..8141691679140.224889-CDS-H-elongata_contig125639:583..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125639 584..814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125639.1915.1prot_H-elongata_contig125639.1915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125639 584..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125639.1915.1

>prot_H-elongata_contig125639.1915.1 ID=prot_H-elongata_contig125639.1915.1|Name=mRNA_H-elongata_contig125639.1915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
IPPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSERNWSLYGDVIGESH
ARMGPERARKLVFVRSNLRLQDKDLPK
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mRNA from alignment at H-elongata_contig125639:584..814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125639.1915.1 ID=mRNA_H-elongata_contig125639.1915.1|Name=mRNA_H-elongata_contig125639.1915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig125639:584..814- (Himanthalia elongata Himel1 dioecious)
ATTCCCCCCGCAGACTGGTGGGTAACGTACGGAAAGATTGGCCTGCCGGA CTTGGCCAAAGTAGCCATTCGCACGACTTCAAAGGTACCTGCATCGGCAG GATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCATTGGCGAAAGTCAC GCACGGATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGTCTAA CCTCAGGTTGCAGGATAAAGACTTACCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig125639:584..814-

>mRNA_H-elongata_contig125639.1915.1 ID=mRNA_H-elongata_contig125639.1915.1|Name=mRNA_H-elongata_contig125639.1915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig125639:584..814- (Himanthalia elongata Himel1 dioecious)
ATTCCCCCCGCAGACTGGTGGGTAACGTACGGAAAGATTGGCCTGCCGGA
CTTGGCCAAAGTAGCCATTCGCACGACTTCAAAGGTACCTGCATCGGCAG
GATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCATTGGCGAAAGTCAC
GCACGGATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGTCTAA
CCTCAGGTTGCAGGATAAAGACTTACCCAAGATTCCCCCCGCAGACTGGT
GGGTAACGTACGGAAAGATTGGCCTGCCGGACTTGGCCAAAGTAGCCATT
CGCACGACTTCAAAGGTACCTGCATCGGCAGGATCGGAGCGCAATTGGAG
TCTGTACGGAGATGTCATTGGCGAAAGTCACGCACGGATGGGCCCCGAGC
GTGCCAGGAAGTTGGTGTTCGTGAGGTCTAACCTCAGGTTGCAGGATAAA
GACTTACCCAAG
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