mRNA_H-elongata_contig125554.1909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125554.1909.1
Unique NamemRNA_H-elongata_contig125554.1909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: D8LIT8_ECTSI (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.180e-23
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 NRLTNQTAQALCDAREP-AWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGR 195
            N+   +  QALCD REP AW MVVPPARLCTDNGVMVAWA VERLR+GMSN AE Q VY RLPLGR
Sbjct:  650 NQELRRRLQALCDEREPDAWRMVVPPARLCTDNGVMVAWAAVERLREGMSNDAEEQEVYARLPLGR 715
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A835YKI5_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.970e-16
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   52 AWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLG 192
            AW MVVPPARLCTDNGVMVAW+ VERLR G+SN A GQ VY R+PLG
Sbjct:  336 AWRMVVPPARLCTDNGVMVAWSAVERLRCGVSNAAAGQEVYARVPLG 382
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A7S0LCV5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LCV5_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.650e-13
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   25 QALCDAREP-------AWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGRATIS 207
            Q LCDA           W++VVPP RLCTDNGVMVAWA  E L+ G  ++A+GQ V  R PLG++  S
Sbjct:  110 QKLCDATAAPGATPGGTWSLVVPPPRLCTDNGVMVAWAAAETLQLGECHIADGQEVRARWPLGKSVAS 177
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: W7TQK2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQK2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-12
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   37 DAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLP 186
            +A  P W +VVPP RLCTDNGVMVAWA +E+LR G S+V EG+ V+ R P
Sbjct:  500 EAPLPPWELVVPPPRLCTDNGVMVAWAAIEKLRLGYSDVVEGRDVHARWP 549
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: K0T4A1_THAOC (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4A1_THAOC)

HSP 1 Score: 70.5 bits (171), Expect = 1.560e-12
Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 NRLTNQTAQALCDAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGRATISS 210
            N+      + LC  R+  W M VPP RLCTD G M AWA VERL  G S+VAEG  VY R P     +++
Sbjct:  427 NKELRSRLEVLCTDRDHRWEMHVPPPRLCTDQGAMSAWASVERLAVGSSDVAEGHEVYARYPFSSNEVAT 496
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A7S2V5H1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5H1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.450e-12
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 RLTNQTAQALCDAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGRA 198
            R  +++A    D    +W + VPP RLCTDNGVMVAWA +ERL+ G+S+      V+PR PLG+A
Sbjct:  439 RKASRSADPPPDFHCESWKLFVPPPRLCTDNGVMVAWAAIERLKLGVSDSPLENDVFPRWPLGKA 503
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A7S2IUQ1_9EUKA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IUQ1_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 9.030e-12
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   25 QALCDAR-------EPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGV 171
            QALCD+        EP W +VVPP RLCTDNGVMVAWA VE++R G S+ AEGQ V
Sbjct:  283 QALCDSTAAPGGSGEP-WQLVVPPPRLCTDNGVMVAWAAVEQMRSGQSHEAEGQEV 337
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: R1CZN8_EMIHU (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZN8_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 6.550e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 WNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGR 195
            W MVVPP RLCTDNGVMVAWA  ERL+ G+++  + + V  R PLGR
Sbjct:  365 WRMVVPPPRLCTDNGVMVAWAAAERLKLGLTDAPDVEHVRARWPLGR 411
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A448Z7G4_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7G4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.040e-11
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 NRLTNQTAQALCDAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLP 186
            N+   +  Q+ CD RE  W MVVPP RLCTD G M +WA +ERLR G S+    Q +Y R P
Sbjct:  427 NQELRRRLQSKCDDRE--WTMVVPPPRLCTDQGAMASWAAIERLRLGSSDDPSTQDIYARYP 486
[Close]
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Match: A0A7R9UR57_DIALT (N(6)-L-threonylcarbamoyladenine synthase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UR57_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 1.820e-10
Identity = 36/66 (54.55%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 NRLTNQTAQALCDAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSNVAEGQGVYPRLPLGRA 198
            N L      ALC+  E    M  PP RLCTDNGVMVAWA +ERL  G S+ AEG  V  R PLG A
Sbjct:  245 NALVRARLGALCE--EHGLAMHTPPPRLCTDNGVMVAWAAIERLALGHSDQAEGTEVRARWPLGAA 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125554.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT8_ECTSI8.180e-2375.76Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A835YKI5_9STRA1.970e-1678.72Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S0LCV5_9EUKA1.650e-1351.47Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
W7TQK2_9STRA1.150e-1262.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
K0T4A1_THAOC1.560e-1247.14Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2V5H1_9STRA7.450e-1249.23Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2IUQ1_9EUKA9.030e-1262.50Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
R1CZN8_EMIHU6.550e-1161.70Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A448Z7G4_9STRA9.040e-1150.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7R9UR57_DIALT1.820e-1054.55N(6)-L-threonylcarbamoyladenine synthase n=2 Tax=D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125554contigH-elongata_contig125554:1539..1751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D8LIT8
Preferred nameOSGEPL1
KEGG rclassRC00070,RC00416,RC00773
KEGG koko:K01409,ko:K10721
KEGG ReactionR08134,R08138,R10648
KEGG Pathwayko00981,map00981
GOsGO:0000003,GO:0000408,GO:0000959,GO:0000963,GO:0002949,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008270,GO:0009451,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0017171,GO:0019538,GO:0019866,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070011,GO:0070525,GO:0070900,GO:0071704,GO:0072670,GO:0090304,GO:0090646,GO:0140053,GO:0140096,GO:1900864,GO:1901360,GO:1901564
EggNOG free text desc.mitochondrial tRNA threonylcarbamoyladenosine modification
EggNOG OGsCOG0533@1,KOG2707@2759
EC2.3.1.234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00199,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKae1/YgjD family
Ec32 orthologEc-20_001490.1
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.8770647-CDS-H-elongata_contig125554:1538..17511622929741.8770647-CDS-H-elongata_contig125554:1538..1751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125554 1539..1751 +
1691679139.9977007-CDS-H-elongata_contig125554:1538..17511691679139.9977007-CDS-H-elongata_contig125554:1538..1751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125554 1539..1751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125554.1909.1prot_H-elongata_contig125554.1909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125554 1539..1751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125554.1909.1

>prot_H-elongata_contig125554.1909.1 ID=prot_H-elongata_contig125554.1909.1|Name=mRNA_H-elongata_contig125554.1909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
NRLTNQTAQALCDAREPAWNMVVPPARLCTDNGVMVAWAGVERLRKGMSN
VAEGQGVYPRLPLGRATISS*
back to top

mRNA from alignment at H-elongata_contig125554:1539..1751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125554.1909.1 ID=mRNA_H-elongata_contig125554.1909.1|Name=mRNA_H-elongata_contig125554.1909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig125554:1539..1751+ (Himanthalia elongata Himel1 dioecious)
AATCGATTAACCAATCAAACTGCACAGGCGCTATGTGATGCCCGAGAACC
CGCCTGGAACATGGTTGTGCCCCCCGCGAGACTCTGCACAGACAACGGCG
TCATGGTGGCCTGGGCAGGGGTGGAAAGACTGCGGAAGGGGATGTCCAAC
GTAGCGGAGGGGCAAGGCGTCTACCCACGATTGCCGCTGGGGCGCGCTAC
GATCAGCTCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig125554:1539..1751+

>mRNA_H-elongata_contig125554.1909.1 ID=mRNA_H-elongata_contig125554.1909.1|Name=mRNA_H-elongata_contig125554.1909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig125554:1539..1751+ (Himanthalia elongata Himel1 dioecious)
AATCGATTAACCAATCAAACTGCACAGGCGCTATGTGATGCCCGAGAACC
CGCCTGGAACATGGTTGTGCCCCCCGCGAGACTCTGCACAGACAACGGCG
TCATGGTGGCCTGGGCAGGGGTGGAAAGACTGCGGAAGGGGATGTCCAAC
GTAGCGGAGGGGCAAGGCGTCTACCCACGATTGCCGCTGGGGCGCGCTAC
GATCAGCTCCTAGAATCGATTAACCAATCAAACTGCACAGGCGCTATGTG
ATGCCCGAGAACCCGCCTGGAACATGGTTGTGCCCCCCGCGAGACTCTGC
ACAGACAACGGCGTCATGGTGGCCTGGGCAGGGGTGGAAAGACTGCGGAA
GGGGATGTCCAACGTAGCGGAGGGGCAAGGCGTCTACCCACGATTGCCGC
TGGGGCGCGCTACGATCAGCTCCTAG
back to top