mRNA_H-elongata_contig125480.1905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125480.1905.1
Unique NamemRNA_H-elongata_contig125480.1905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: D7FKJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.830e-27
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:   16 AATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            AA AKSSAHYDL+I+GSGPAAQKCA+ES KYGK VC++DKSS LGGVCVHTGTIPSKTFR
Sbjct:   34 AALAKSSAHYDLVIVGSGPAAQKCAIESAKYGKSVCIVDKSSQLGGVCVHTGTIPSKTFR 93          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A225VQV1_9STRA (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQV1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-22
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            PL+      ++S H+DLI+IGSGPA QKCA++S K+GK V ++DK  +LGGVCVHTGT+PSKTFR
Sbjct:   39 PLTDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIVDKRDMLGGVCVHTGTVPSKTFR 103          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A4D9CNB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNB1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.750e-22
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 1
Query:   34 SAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            SAHYDLI+IGSGPAAQKCA++SVK G+RV +IDK+S +GGVCVHTGTIPSKTFR
Sbjct:   56 SAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTGTIPSKTFR 109          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A662X7S1_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7S1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.490e-22
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            PLS      ++S H+DLI+IGSGPA QKCA++S K+GK V VIDK  +LGGVCVHTGT+PSKTFR
Sbjct:   44 PLSDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAVIDKRDMLGGVCVHTGTVPSKTFR 108          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A2P4YGV7_9STRA (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGV7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.750e-21
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   37 AHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            A YDL++IGSGP+A +CALES K GKRV V+D+ S LGGVCVHTGTIPSKTFR
Sbjct:   27 AAYDLVVIGSGPSATQCALESAKQGKRVAVVDRKSRLGGVCVHTGTIPSKTFR 79          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.290e-20
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1
Query:   40 HYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            HYDLIIIGSGPAAQKCA++S K G+RV V+DK  ++GGVCVHTGTIPSKTFR
Sbjct:   55 HYDLIIIGSGPAAQKCAVDSAKLGRRVAVVDKLGMIGGVCVHTGTIPSKTFR 106          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: K3WL68_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 1.710e-20
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            PLS      K+S H+DLI+IGSGPA QKCA++S K+GK V +IDK  + GGVCVHTGT+PSKTFR
Sbjct:   36 PLSDMLRELKASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMHGGVCVHTGTVPSKTFR 100          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A8J5JAY8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAY8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.800e-20
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            PL+      ++S H+DLI+IGSGPA QKCA++S K+GK V +IDK  +LGGVCVHTGT+PSKTFR
Sbjct:   37 PLTDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMLGGVCVHTGTVPSKTFR 101          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: F0VZ15_9STRA (Soluble pyridine nucleotide transhydrogenase putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZ15_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.370e-20
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   28 KSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            K+S HYDLI++GSGPA QKCA++S K+GK V +IDK+ + GGVCVHTGT+PSKTFR
Sbjct:   50 KASEHYDLIVVGSGPAGQKCAIDSAKHGKSVAIIDKNEMHGGVCVHTGTVPSKTFR 105          
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A0P1AKW9_PLAHL (Soluble pyridine nucleotide n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW9_PLAHL)

HSP 1 Score: 92.4 bits (228), Expect = 2.400e-20
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   28 KSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
            ++S H+DLI+IGSGPA QKCA++S K+GK V +IDK  +LGGVCVHTGTIPSKTFR
Sbjct:   31 RASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMLGGVCVHTGTIPSKTFR 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKJ5_ECTSI9.830e-2785.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A225VQV1_9STRA1.050e-2261.54Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CNB1_9STRA4.750e-2281.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A662X7S1_9STRA6.490e-2266.15Pyr_redox_2 domain-containing protein (Fragment) n... [more]
A0A2P4YGV7_9STRA4.750e-2175.47Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A835ZER9_9STRA1.290e-2078.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WL68_GLOUD1.710e-2064.62Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J5JAY8_9STRA1.800e-2063.08Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
F0VZ15_9STRA2.370e-2069.64Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A0P1AKW9_PLAHL2.400e-2071.43Soluble pyridine nucleotide n=1 Tax=Plasmopara hal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125480contigH-elongata_contig125480:728..1210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog2880.D7FKJ5
EggNOG free text desc.dihydrolipoyl dehydrogenase activity
EggNOG OGsCOG1249@1,KOG1335@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.4099166-CDS-H-elongata_contig125480:727..7881622929741.4099166-CDS-H-elongata_contig125480:727..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125480 728..788 +
1691679139.836151-CDS-H-elongata_contig125480:727..7881691679139.836151-CDS-H-elongata_contig125480:727..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125480 728..788 +
1622929741.5464642-CDS-H-elongata_contig125480:1073..12101622929741.5464642-CDS-H-elongata_contig125480:1073..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125480 1074..1210 +
1691679139.8469732-CDS-H-elongata_contig125480:1073..12101691679139.8469732-CDS-H-elongata_contig125480:1073..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125480 1074..1210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125480.1905.1prot_H-elongata_contig125480.1905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125480 728..1210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125480.1905.1

>prot_H-elongata_contig125480.1905.1 ID=prot_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLG
GVCVHTGTIPSKTFR*
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mRNA from alignment at H-elongata_contig125480:728..1210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125480.1905.1 ID=mRNA_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig125480:728..1210+ (Himanthalia elongata Himel1 dioecious)
CCGTTAAGTTCACAAGCTGCGACAGCTAAGTCAAGCGCACATTACGACCT GATCATAATAGGTGAGGGCAAGTCAATGCAGTATGAAATTGTATCGTGTA TTTAAAGAACGATCATGTCTCGATCATGCACGCGTCATCGCTTTTCACCG TCGCGCATTACGTGACCTCTGAGTGCAAAGATCTAGTCTATCTGACTTAT AACCTGATAATTCAGGCGTTATGTAACATAGGAAGCATGCGGGTTGGATA GTGTTGTCAAGGTTGTAGATCTGCAACATGGCACATGGCGTACCGGTTTC TCACCAAGTTCAATATGGCCGAACCCGACATCCCCATACCCTGCAGGCTC CGGCCCGGCCGCACAGAAATGTGCTCTCGAGTCTGTCAAGTACGGGAAGA GGGTATGCGTTATCGACAAAAGCTCTCTACTGGGCGGTGTGTGTGTGCAC ACGGGGACTATCCCTTCCAAGACTTTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125480:728..1210+

>mRNA_H-elongata_contig125480.1905.1 ID=mRNA_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig125480:728..1210+ (Himanthalia elongata Himel1 dioecious)
CCGTTAAGTTCACAAGCTGCGACAGCTAAGTCAAGCGCACATTACGACCT
GATCATAATAGCCGTTAAGTTCACAAGCTGCGACAGCTAAGTCAAGCGCA
CATTACGACCTGATCATAATAGGCTCCGGCCCGGCCGCACAGAAATGTGC
TCTCGAGTCTGTCAAGTACGGGAAGAGGGTATGCGTTATCGACAAAAGCT
CTCTACTGGGCGGTGTGTGTGTGCACACGGGGACTATCCCTTCCAAGACT
TTCAGGTGAGCTCCGGCCCGGCCGCACAGAAATGTGCTCTCGAGTCTGTC
AAGTACGGGAAGAGGGTATGCGTTATCGACAAAAGCTCTCTACTGGGCGG
TGTGTGTGTGCACACGGGGACTATCCCTTCCAAGACTTTCAGGTGA
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