mRNA_H-elongata_contig125205.1894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125205.1894.1
Unique NamemRNA_H-elongata_contig125205.1894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A6H5KPE6_9PHAE (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.980e-38
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 VTTAHFRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLA 240
            VTTAHFRPNFVV GVRAHEEDGW+SV  G +LR RVTGPCSRCSMINI+PE GDTSGVAL+VLA+YRRERANI+FGQFLA
Sbjct: 1288 VTTAHFRPNFVVDGVRAHEEDGWKSVRIGEALRLRVTGPCSRCSMINIDPENGDTSGVALRVLAAYRRERANILFGQFLA 1367          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: D7G4D6_ECTSI (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.140e-36
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 VTTAHFRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSR--CSMININPETGDTSGVALKVLASYRRERANIVFGQFLA 240
            VTTAHFRPNFVV GVRAHEEDGW+SV  G +LR RVTGPCSR  CSMINI+PE GDTSGVAL+VLA YRRERANI+FGQFLA
Sbjct: 1071 VTTAHFRPNFVVEGVRAHEEDGWKSVRIGEALRLRVTGPCSRWRCSMINIDPENGDTSGVALRVLAGYRRERANILFGQFLA 1152          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A835Z2R2_9STRA (Molybdenum cofactor sulfurase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.700e-30
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 VTTAHFRPNFVVGGVRAHEEDGWRSVSF----GGS--LRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLA 240
            VT  HFRPNFVVGGV AH EDGW  V+     GG+    F VTG CSRC+MINI+PETGDTSGVAL+VLA YRRERANI+FGQFLA
Sbjct:  792 VTVEHFRPNFVVGGVPAHAEDGWSRVTMQRASGGAPCAAFSVTGSCSRCAMINIDPETGDTSGVALRVLAGYRRERANILFGQFLA 877          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: T0RWD5_SAPDV (Molybdenum cofactor sulfurase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RWD5_SAPDV)

HSP 1 Score: 93.2 bits (230), Expect = 2.670e-20
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 VTTAHFRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLASE 246
            V+ A FR N V+ G R +EED W+ V  G   RF V GPCSRCSMINI+P TG  S   L+ LASYRRERA I FGQFL  +
Sbjct:  664 VSEAVFRANIVIDGCRPYEEDSWKVVRVG-DTRFDVLGPCSRCSMINIDPTTGAFSPAPLQTLASYRRERAKIFFGQFLRQQ 744          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A067D1G3_SAPPC (Molybdenum cofactor sulfurase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D1G3_SAPPC)

HSP 1 Score: 91.3 bits (225), Expect = 1.270e-19
Identity = 47/82 (57.32%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 VTTAHFRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLASE 246
            V+ A FR N V+ G   +EED W+ V  G   RF V GPCSRCSMINI+P TG  S   L+ LASYRRERA I FGQFL  +
Sbjct:  671 VSEAVFRANIVIDGCGPYEEDAWKGVRVG-ETRFDVLGPCSRCSMINIDPTTGAFSPAPLQTLASYRRERAKIFFGQFLRQQ 751          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A1V9ZCH3_9STRA (Molybdenum cofactor sulfurase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCH3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.850e-18
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   16 FRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLASE 246
            FR N +V G   HEED W+ +  G    F V GPCSRC+M+NI+P TG  S   LK LASYRRE+A I FGQFL+ +
Sbjct:  651 FRANLIVDGCFPHEEDTWKKICIG-KASFDVIGPCSRCTMVNIDPSTGVFSPAPLKTLASYRREKARIFFGQFLSRQ 726          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A6G0XF18_9STRA (Molybdenum cofactor sulfurase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XF18_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.850e-17
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   16 FRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQF 234
            FR N +V G   HEED W+ +  G    F   GPC RCSMININ  TG+ S   LK LA+YRR RANI FGQF
Sbjct:  662 FRANIIVEGCSPHEEDNWQEIQIG-DHNFSNVGPCGRCSMININQSTGEFSAAPLKELAAYRRNRANIFFGQF 733          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A024USG2_9STRA (Molybdenum cofactor sulfurase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USG2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.530e-17
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   16 FRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLA 240
            FR NF+V G  AH ED W  V+ G S    V GPC RC+M+NIN  TG++    LK LASYRR+R  I FGQFLA
Sbjct:  681 FRANFIVDGCDAHAEDRWSEVAIG-SHSLAVLGPCGRCTMVNINQTTGESEAGPLKHLASYRRDRGKIYFGQFLA 754          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A8K1C7W7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7W7_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 6.450e-17
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   16 FRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFL 237
            FR N VV G     ED WRSV   G++   VTGPCSRCSMINI+P TG      L+ L+ YRRERA+I+FGQ+L
Sbjct:  719 FRANLVVDGCEPFAEDSWRSVR-AGNVVLGVTGPCSRCSMINIDPSTGAFHRAPLQTLSRYRRERASIIFGQYL 791          
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Match: A0A397BW08_9STRA (MOSC domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BW08_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.930e-17
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   16 FRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININPETGDTSGVALKVLASYRRERANIVFGQFLA 240
            FR N ++ G R HEED W   S G    FR  GPC RC+M+N+N  TG +    LK LASYRR R  I FGQ+ A
Sbjct:   20 FRANLILDGCRPHEEDEWGEFSIGPHA-FRCAGPCGRCTMVNVNQATGTSRTAPLKQLASYRRHRGKIHFGQYAA 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125205.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPE6_9PHAE2.980e-3885.00Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
D7G4D6_ECTSI3.140e-3682.93Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
A0A835Z2R2_9STRA3.700e-3072.09Molybdenum cofactor sulfurase n=1 Tax=Tribonema mi... [more]
T0RWD5_SAPDV2.670e-2058.54Molybdenum cofactor sulfurase n=1 Tax=Saprolegnia ... [more]
A0A067D1G3_SAPPC1.270e-1957.32Molybdenum cofactor sulfurase n=1 Tax=Saprolegnia ... [more]
A0A1V9ZCH3_9STRA2.850e-1854.55Molybdenum cofactor sulfurase n=1 Tax=Thraustothec... [more]
A0A6G0XF18_9STRA1.850e-1756.16Molybdenum cofactor sulfurase n=1 Tax=Aphanomyces ... [more]
A0A024USG2_9STRA2.530e-1756.00Molybdenum cofactor sulfurase n=2 Tax=Aphanomyces ... [more]
A0A8K1C7W7_PYTOL6.450e-1756.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397BW08_9STRA6.930e-1750.67MOSC domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125205contigH-elongata_contig125205:1042..1638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D7G4D6
Preferred nameABA3
KEGG koko:K15631
KEGG ReactionR11583
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006464,GO:0006605,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0006732,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008265,GO:0008299,GO:0008610,GO:0009000,GO:0009058,GO:0009266,GO:0009408,GO:0009409,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009687,GO:0009688,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009743,GO:0009755,GO:0009756,GO:0009987,GO:0010033,GO:0010118,GO:0010182,GO:0015031,GO:0015833,GO:0016053,GO:0016106,GO:0016114,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017038,GO:0018315,GO:0019538,GO:0019637,GO:0019752,GO:0023052,GO:0032787,GO:0032870,GO:0033036,GO:0033365,GO:0034613,GO:0036211,GO:0042040,GO:0042221,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043288,GO:0043289,GO:0043412,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0045036,GO:0045037,GO:0045184,GO:0046165,GO:0046394,GO:0046483,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051189,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0065002,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072330,GO:0072594,GO:0072596,GO:0072598,GO:0098542,GO:1901360,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902644,GO:1902645
EggNOG free text desc.molybdenum cofactor sulfurtransferase activity
EggNOG OGsCOG0520@1,KOG2142@2759
EC2.8.1.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.7848966-CDS-H-elongata_contig125205:1041..11651622929739.7848966-CDS-H-elongata_contig125205:1041..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125205 1042..1165 -
1691679139.3198006-CDS-H-elongata_contig125205:1041..11651691679139.3198006-CDS-H-elongata_contig125205:1041..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125205 1042..1165 -
1622929739.801853-CDS-H-elongata_contig125205:1513..16381622929739.801853-CDS-H-elongata_contig125205:1513..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125205 1514..1638 -
1691679139.3327081-CDS-H-elongata_contig125205:1513..16381691679139.3327081-CDS-H-elongata_contig125205:1513..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125205 1514..1638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125205.1894.1prot_H-elongata_contig125205.1894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125205 1042..1638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125205.1894.1

>prot_H-elongata_contig125205.1894.1 ID=prot_H-elongata_contig125205.1894.1|Name=mRNA_H-elongata_contig125205.1894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VTTAHFRPNFVVGGVRAHEEDGWRSVSFGGSLRFRVTGPCSRCSMININP
ETGDTSGVALKVLASYRRERANIVFGQFLASEG
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mRNA from alignment at H-elongata_contig125205:1042..1638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125205.1894.1 ID=mRNA_H-elongata_contig125205.1894.1|Name=mRNA_H-elongata_contig125205.1894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig125205:1042..1638- (Himanthalia elongata Himel1 dioecious)
GTGACCACCGCCCACTTCAGGCCCAATTTCGTCGTCGGTGGCGTGCGAGC GCACGAGGAGGACGGCTGGCGAAGCGTCAGCTTCGGGGGCTCGCTGAGAT TCCGGGTGACCGGCCCTTGTAGCCGGTCAGTTTTTGTAGAGAGTGCGCCT GACTAGTACATTCATCCCCTTTGATGAGGCGGGGGAGTGTCCCAGCAAAA TAGGAGCCATTGAAAAATGCAACCCTCTAGAGCATGCGTCGAACCGGGAG AATCGAATCGAAACGCCCACGCTTTGTGTCGATAATAAAATCTTTTTGAC TGGTGGGAGACAGTGTTTTTGGTCGCACGCCGCATTGTTTTCGAGAGGAA AGCGCACCCGCGCTCGTGTCGATAATATGGCGCTTTTCCTTGCCCTATAT CGTCACCACAAGGTCGACGCTGATATCGCTGTATAACCTCTTTTACCTTA CCGCCCCGTGGAACTTCCCGCAGATGCTCCATGATTAACATAAACCCTGA GACGGGGGACACCTCGGGGGTTGCACTTAAGGTCCTCGCGAGCTATCGCA GGGAGCGTGCCAACATCGTCTTCGGGCAGTTTCTCGCAAGCGAGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig125205:1042..1638-

>mRNA_H-elongata_contig125205.1894.1 ID=mRNA_H-elongata_contig125205.1894.1|Name=mRNA_H-elongata_contig125205.1894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig125205:1042..1638- (Himanthalia elongata Himel1 dioecious)
GTGACCACCGCCCACTTCAGGCCCAATTTCGTCGTCGGTGGCGTGCGAGC
GCACGAGGAGGACGGCTGGCGAAGCGTCAGCTTCGGGGGCTCGCTGAGAT
TCCGGGTGACCGGCCCTTGTAGCCGGTGACCACCGCCCACTTCAGGCCCA
ATTTCGTCGTCGGTGGCGTGCGAGCGCACGAGGAGGACGGCTGGCGAAGC
GTCAGCTTCGGGGGCTCGCTGAGATTCCGGGTGACCGGCCCTTGTAGCCG
ATGCTCCATGATTAACATAAACCCTGAGACGGGGGACACCTCGGGGGTTG
CACTTAAGGTCCTCGCGAGCTATCGCAGGGAGCGTGCCAACATCGTCTTC
GGGCAGTTTCTCGCAAGCGAGGGCATGCTCCATGATTAACATAAACCCTG
AGACGGGGGACACCTCGGGGGTTGCACTTAAGGTCCTCGCGAGCTATCGC
AGGGAGCGTGCCAACATCGTCTTCGGGCAGTTTCTCGCAAGCGAGGGC
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