mRNA_H-elongata_contig125107.1889.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: D7FQY0_ECTSI (Dihydroorotase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY0_ECTSI) HSP 1 Score: 335 bits (859), Expect = 4.360e-113 Identity = 156/191 (81.68%), Postives = 174/191 (91.10%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGDAKCPR 573
PLV KMP LK+V+EHITTSEAVAFV+AAP NVAATITPQHLLYNRNAIFQGGI PHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTD+APHA+EAK+SPCGCAGIFTGHAALELYCE+F+GEG+LDR A F SH GADFYG+PRNEG T+VKE+W VP SY FG+++VVPLRAG+ V WQMVG+ K P+
Sbjct: 163 PLVQKMPNLKVVMEHITTSEAVAFVTAAPANVAATITPQHLLYNRNAIFQGGIRPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDTAPHAREAKISPCGCAGIFTGHAALELYCEVFEGEGALDRFAGFSSHHGADFYGIPRNEGALTLVKEKWTVPGSYKFGQTEVVPLRAGEDVCWQMVGEGKRPK 353
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A835ZAN4_9STRA (Dihydroorotase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN4_9STRA) HSP 1 Score: 273 bits (699), Expect = 8.250e-89 Identity = 129/190 (67.89%), Postives = 148/190 (77.89%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGDAKCP 570
PLV + P LK+V EHITT EA FV ++ PNVAATITPQHLLYNRN IF+GG+ PHMYCLP+LKRE HRL LV AATSG+ K FLGTDSAPHA+ AK S CGCAGIF+GHAALELY E+FD G+LD AFCS GADFYGLPRN T+ +E W VP SYAFG S+VVPLRAG+ V WQ+ + + P
Sbjct: 165 PLVARFPNLKVVAEHITTKEAAEFVLSSGPNVAATITPQHLLYNRNEIFRGGVRPHMYCLPILKREEHRLALVGAATSGSAKIFLGTDSAPHARGAKESACGCAGIFSGHAALELYAEVFDAAGALDSFGAFCSQRGADFYGLPRNAATVTLAREPWRVPASYAFGASEVVPLRAGEHVAWQIADEGRRP 354
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A6M4H5M7_9PROT (Dihydroorotase n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H5M7_9PROT) HSP 1 Score: 266 bits (681), Expect = 2.930e-86 Identity = 126/185 (68.11%), Postives = 145/185 (78.38%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
PL+ + +LK+VLEHITT EA FV AP NVAATITPQHLL NRNAIF GG+ PH YCLPVLKRE HR LVK ATSGNPKFFLG+D+APHA+ K + CGCAGI++ HAALELY E F+ G+LD+L AF SHFGADFYGLPRN+ T+ K EW VP YAFGES VVPLRAG+K+ W+ G
Sbjct: 161 PLLKRFAKLKVVLEHITTHEAAVFVERAPDNVAATITPQHLLMNRNAIFAGGLRPHHYCLPVLKREQHRRALVKVATSGNPKFFLGSDTAPHARPTKETSCGCAGIYSAHAALELYAEAFETAGALDKLEAFASHFGADFYGLPRNKAKVTLEKTEWEVPAEYAFGESTVVPLRAGEKLRWRFAG 345
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A0S8G8N3_9PROT (Dihydroorotase (Fragment) n=1 Tax=Acidithiobacillales bacterium SM23_46 TaxID=1703385 RepID=A0A0S8G8N3_9PROT) HSP 1 Score: 259 bits (661), Expect = 3.220e-84 Identity = 122/184 (66.30%), Postives = 142/184 (77.17%), Query Frame = 1
Query: 4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
L + P+L+MVLEH+TT E VAFV + PNVAATIT HLL NRNA+F GGI PH YCLPVLKRETHR LV+AATSGNPKFFLGTDSAPHAK K + CGCAGI+T HAALELY E F+ G+LDRL AF SHFG DFY LPRN G T++KE W VP AFG+ ++VP+RAG+ + W+ G
Sbjct: 87 LAREFPKLRMVLEHVTTREGVAFVEQSGPNVAATITAHHLLLNRNAMFAGGIRPHAYCLPVLKRETHRAALVRAATSGNPKFFLGTDSAPHAKRLKEAACGCAGIYTAHAALELYAEAFEQSGALDRLEAFASHFGPDFYRLPRNLGTVTLMKETWRVPGELAFGDERLVPMRAGEILTWKFAG 270
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1G5Q761_9GAMM (Dihydroorotase n=1 Tax=Thiohalomonas denitrificans TaxID=415747 RepID=A0A1G5Q761_9GAMM) HSP 1 Score: 261 bits (666), Expect = 5.470e-84 Identity = 122/186 (65.59%), Postives = 147/186 (79.03%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGD 558
PL+ + P+LK+V+EHITT EAV FV A NVAAT+TP HLL NRNA+ GGI PH YCLPVLKRE+HR L++A+TSGNP+FFLGTDSAPHA+ AK + CGCAGI++ HAALELY E F+ G+LDRL AF +H+GADFYGLPRN G T+ K EW VP SYAFG +VPLRAG+ V W++V D
Sbjct: 160 PLLERHPDLKVVMEHITTREAVEFVKRAGANVAATVTPHHLLMNRNALLAGGIRPHHYCLPVLKRESHREALLEASTSGNPRFFLGTDSAPHARGAKETACGCAGIYSAHAALELYTEAFEQAGALDRLEAFAAHYGADFYGLPRNSGSVTLEKSEWRVPESYAFGGDHLVPLRAGETVAWRLVSD 345
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1Y0G5K2_9PROT (Dihydroorotase n=1 Tax=Sulfuriferula sp. AH1 TaxID=1985873 RepID=A0A1Y0G5K2_9PROT) HSP 1 Score: 260 bits (665), Expect = 7.740e-84 Identity = 119/184 (64.67%), Postives = 142/184 (77.17%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
PL P LK+VLEHITT++ AFVSAAP N+AATIT HLLYNRNA+FQGGI PH YCLP+LKRE HRL LV+AATSGNPKFFLGTDSAPHA+ AK + CGCAGI+T HAA+ELY E F+ G+LD+L F SHFGADFYGL RN G T+ KE W+ P + G Q++PLRA + + W++
Sbjct: 160 PLTRAFPALKIVLEHITTAQGAAFVSAAPANIAATITAHHLLYNRNAMFQGGIRPHYYCLPILKREQHRLALVQAATSGNPKFFLGTDSAPHARSAKEATCGCAGIYTAHAAIELYAEAFEAAGALDKLEGFASHFGADFYGLSRNTGSITLAKESWIAPAHISIGNEQLIPLRAHEAIAWRLA 343
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A537D4W8_9PROT (Dihydroorotase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D4W8_9PROT) HSP 1 Score: 258 bits (658), Expect = 1.240e-82 Identity = 119/184 (64.67%), Postives = 143/184 (77.72%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
P++ P LK+VLEH+TT EA F++AAP +V ATITPQHLL++RNA+ GGI PH+YCLP+LKRE+HR LVKAATSGNPKFFLGTDSAPHA+ AK S CGCAG +T HAALELY E F+ G+LD+L AF S GADFYGLPRN T+++E W VP YAFG VVPL AGQ + W++V
Sbjct: 161 PILRDFPALKVVLEHVTTREAAEFIAAAPAHVGATITPQHLLHSRNALLAGGIRPHLYCLPILKRESHRQALVKAATSGNPKFFLGTDSAPHARNAKQSACGCAGCYTAHAALELYAEAFETAGALDKLEAFASFHGADFYGLPRNGDTVTLMREAWTVPAEYAFGSHAVVPLNAGQTMRWRLV 344
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1Q4GQE3_9PROT (Dihydroorotase n=1 Tax=Thiobacillus sp. 65-29 TaxID=1895862 RepID=A0A1Q4GQE3_9PROT) HSP 1 Score: 256 bits (653), Expect = 4.910e-82 Identity = 124/184 (67.39%), Postives = 144/184 (78.26%), Query Frame = 1
Query: 4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
L+ P LK+VLEHITT +A FV+AAP +VAATIT HLLYNRNA+F+GG+ PH YCLPVLKRE HR LV AATSGNPKFFLGTDSAPHA AK S CGCAGI++ HAALELY E F+ G+LDRL AF S FGADFYGLPRN G T+ +E W VP AFGE+ +VPLRAG+ + W++VG
Sbjct: 161 LLQDFPRLKIVLEHITTRQAAEFVAAAPAHVAATITVHHLLYNRNAMFRGGLRPHFYCLPVLKRERHREALVAAATSGNPKFFLGTDSAPHAVGAKESGCGCAGIYSAHAALELYAEAFEDAGALDRLEAFASFFGADFYGLPRNTGRVTLRRETWTVPERLAFGEAALVPLRAGETLRWRVVG 344
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A5C7ELI9_9PROT (Dihydroorotase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7ELI9_9PROT) HSP 1 Score: 255 bits (652), Expect = 6.350e-82 Identity = 118/184 (64.13%), Postives = 142/184 (77.17%), Query Frame = 1
Query: 1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
PL+ + P LK+VLEHITT EAV FV+ APP VAATIT HLL+NRN +F+GG+ PH YCLPVLKRE HR LV AATSGNPKFFLGTDSAPH + AK + CGCAGI+T HAALELY E F+ G+LD+L AF S G FYGLPRN G T+V+E W VP +Y FG+ VVP+RAG+++ W++
Sbjct: 157 PLIERYPRLKVVLEHITTEEAVRFVTLAPPRVAATITAHHLLWNRNQLFEGGLRPHHYCLPVLKRERHRQALVAAATSGNPKFFLGTDSAPHPRRAKEATCGCAGIYTAHAALELYAEAFEAAGALDKLEAFASFNGPAFYGLPRNAGTVTLVREPWRVPETYPFGDEVVVPMRAGERIAWRLA 340
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1G0NB72_9PROT (Dihydroorotase n=1 Tax=Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 TaxID=1798415 RepID=A0A1G0NB72_9PROT) HSP 1 Score: 255 bits (652), Expect = 6.960e-82 Identity = 117/183 (63.93%), Postives = 144/183 (78.69%), Query Frame = 1
Query: 4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
L+ P LK+VLEHITT +A FV+AAP NVAAT+T HLLYNRNA+FQGGI PH+YCLP+LKRETHR LV AA SGNPKFFLGTDSAPHA AK S CGCAGI++ HAA+ELY E+FD G+LD+L AF S +GADFYGLPRN T+ +E W+ P + GE+Q++PLR G+K+ W+++
Sbjct: 162 LMRDFPRLKIVLEHITTRQAAEFVAAAPTNVAATLTVHHLLYNRNAMFQGGIRPHLYCLPILKRETHREALVAAAISGNPKFFLGTDSAPHALGAKESSCGCAGIYSAHAAIELYAEVFDAAGALDKLEAFASFYGADFYGLPRNIDTITLQRESWLAPQQLSMGEAQLIPLRGGEKIHWRVM 344 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125107.1889.1 >prot_H-elongata_contig125107.1889.1 ID=prot_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPback to top mRNA from alignment at H-elongata_contig125107:121..1344+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125107.1889.1 ID=mRNA_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-elongata_contig125107:121..1344+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125107:121..1344+ >mRNA_H-elongata_contig125107.1889.1 ID=mRNA_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig125107:121..1344+ (Himanthalia elongata Himel1 dioecious)back to top |