mRNA_H-elongata_contig124984.1885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124984.1885.1
Unique NamemRNA_H-elongata_contig124984.1885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: D7FVY2_ECTSI (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.040e-54
Identity = 103/194 (53.09%), Postives = 137/194 (70.62%), Query Frame = 1
Query:    1 PLCLLSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVGPVLQARLLSMVAATGAMETLKEAAGVVDVGEFQDTVGAVGTVVKDIVQD 582
            PLC   F L FW  ER  R YP+  +GLV AQ+L +A+L+  WCA  G+LP SL S+   V P+SG+LA+PI+++WTG+VTT+L+V+GET+A++KVSAAESTIILST+PIWGTAFAAV+LGE++G          +SACTWTSVGP LQ+++LS+ AA     T+ E           D    VGTV+K+IV+D
Sbjct:  465 PLC---FGLGFWLTERCSRKYPEEIFGLVAAQLLTVAVLAVGWCAQAGDLPLSLASLRETVLPSSGNLAVPISLMWTGLVTTSLTVFGETVAMKKVSAAESTIILSTEPIWGTAFAAVLLGESIGXXXXXXXXXXVSACTWTSVGPALQSKMLSLAAAVAGAGTVVEGG--------DDLAETVGTVIKEIVKD 647          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A835ZPH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPH7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.220e-29
Identity = 70/162 (43.21%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 PLCLLSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVGPVLQARLLSMVAATGAM 486
            P+C   F + FWRM +  R  P +A GL  AQ+L ++ LS LW  + G   S +  VL+      G   + + +LWTG++TTAL+V  ET+AL+++SAAEST+I ST+P+WGTAFA  +LGE  G +T  GA+LI+ AC W++    ++ +LL   AA G +
Sbjct:  301 PVC---FGMGFWRMAKFARESPNHAMGLTAAQLLAVSGLSTLWAMLSGADFSVVPGVLA------GDARVGVALLWTGLITTALTVGFETVALKRLSAAESTVIFSTEPLWGTAFAVALLGEHAGLHTAAGALLILCACLWST----MKRQLLGGAAAVGGL 449          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A6U3SPQ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SPQ3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.120e-25
Identity = 58/148 (39.19%), Postives = 92/148 (62.16%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELP-------SSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            L F + +WRME   + +P+++  +   Q+  + +LS LW  VD           +SLD+++  V  A  S  +  T+LWTG+V T L+VYGETLA+ ++SA E+T++ S +P+ G AFA V LGE +  +TL+GA +I+ AC W ++G
Sbjct:  160 LGFGIGYWRMETMSQRWPRHSLTIAAGQVFAVGLLSWLWVLVDQSNDGMFVWDATSLDALIGEVGGAVQSPKIIATMLWTGVVATGLTVYGETLAMTQISATEATLLFSIEPVCGAAFARVFLGEKLSLSTLIGAGVILMACVWNALG 307          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: B7GA19_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA19_PHATC)

HSP 1 Score: 111 bits (277), Expect = 5.910e-25
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 PLCLLSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILS---GLWCAVDGELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            P+C   F +AFWRME   + +P  A     AQ+L++ ++S   GL+        + L + LS     +  LA   ++ WTG ++TAL+VY ETLAL+ +SAAE+T+I ST+P+WGTAFAA+++GET+GW + VGAVLI+S C ++++G
Sbjct:  336 PIC---FGIAFWRMEAAMQRFPNEANRSTAAQLLMVFLVSLTFGLFTDPGAFNVAQLQAWLS----DTNILA---SLFWTGCISTALTVYMETLALKTLSAAETTLIFSTEPLWGTAFAALIMGETLGWESAVGAVLILSGCVFSNLG 473          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A448Z5H3_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5H3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.070e-25
Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILS---GLWCAV------DGELPSSLDSVLSLVFPASGSLAMP---ITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            L+F L FWRME+    +P+ A  +  AQ+L I   S   GLW          G  P+ L+S+ +  FP       P    ++ WTG VTTAL++Y ETLAL+ +SAAE+T+I ST+P+WGTAFA  V+GE +G N +VGA LI++AC ++++G
Sbjct:  393 LTFGLGFWRMEQAMHLFPREAPRMTAAQLLAIFCASAGYGLWTLGVFGGPGAGADPAGLESIAA-AFPWRDWCTDPSILFSLFWTGCVTTALTIYMETLALESLSAAETTLIFSTEPLWGTAFAVAVMGEQMGTNAVVGAGLILAACLYSNLG 544          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A6S8J0W1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8J0W1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.530e-25
Identity = 63/141 (44.68%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            L+F +AFWRME+    YP+ A     AQ+L + + S  +  V    P   D    + F +  ++ +  ++ WTG +TTAL++Y E+ AL+ +SAAE+T+ILST+P+WGTAFAA VLGE VG +T +GAVLII+AC  +++G
Sbjct:  277 LAFGVAFWRMEQVMHKYPEEAKRATAAQLLAVFLGSAAYGFVTD--PGFFDMTKIIQFVSEPTVLL--SLFWTGCITTALTIYMESTALKSLSAAETTLILSTEPLWGTAFAAAVLGEQVGVDTGIGAVLIIAACLVSNLG 413          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A7S0TJA2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJA2_HEMAN)

HSP 1 Score: 106 bits (265), Expect = 2.280e-24
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVD-------GELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISAC 417
            L+F   FW+ME   R +P     L   Q+ ++A+ +  W  +        GELP+ +D++++    A G   + + +LWTG+VTTAL+V+ ET+AL ++ +AE T++ ST+P+WGTAFAA +LGE VG NT VG  LI++AC
Sbjct:  161 LAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPA-IDALVA----ALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAAC 297          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A7S2UQU1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQU1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.420e-24
Identity = 58/144 (40.28%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELPSSLDSVLSLVFPASGSLAMPI---TILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            ++F L FWRME+  + +P +A  +  AQ+L + + S  +CA+     S    V+  +   +  L  P+    + WTG++TTAL+VY ETLAL+ +SAAE+T+I ST+P+WG+AFAA V+GE  G +  +GA LI+  C ++++G
Sbjct:  121 VAFGLGFWRMEKAMQRFPDDAARMTAAQLLAVFVSSATYCAISF---SKGMEVIPDMTQLTEWLTDPMILGALFWTGLITTALTVYMETLALKTLSAAETTLIFSTEPLWGSAFAAAVVGERFGMDAAIGAGLILGGCAYSNIG 261          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A7S1EIS4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EIS4_HEMAN)

HSP 1 Score: 106 bits (265), Expect = 1.020e-23
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVD-------GELPSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISAC 417
            L+F   FW+ME   R +P     L   Q+ ++A+ +  W  +        GELP+ +D++++    A G   + + +LWTG+VTTAL+V+ ET+AL ++ +AE T++ ST+P+WGTAFAA +LGE VG NT VG  LI++AC
Sbjct:  279 LAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPA-IDALVA----ALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAAC 415          
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Match: A0A1E7FD72_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD72_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.740e-23
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   13 LSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGELPSSLDSVLSLVFPASGSLAMP---ITILWTGIVTTALSVYGETLALQKVSAAESTIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVG 435
            L+F + FW++E+    YP  A  L  AQ+L I      +CA  G   SS+D+     +P       P    ++ WTG++T+AL++Y E  A++ +SAAE+T+I +T+PIWGTAFAAVV+ E  G N+ VGA  I+SAC ++++G
Sbjct:  237 LAFGIGFWKVEKALERYPTEARRLTAAQLLAI------FCASVGFGLSSIDASTLQSYPWMDWFTNPSIMFSLFWTGVITSALTIYMENKAMETLSAAEATVIFATEPIWGTAFAAVVMSEQFGMNSAVGAAFIMSACFYSNLG 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124984.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY2_ECTSI2.040e-5453.09EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZPH7_9STRA2.220e-2943.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U3SPQ3_9STRA3.120e-2539.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B7GA19_PHATC5.910e-2543.92Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448Z5H3_9STRA6.070e-2543.79Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A6S8J0W1_9STRA9.530e-2544.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0TJA2_HEMAN2.280e-2441.55Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2UQU1_9STRA5.420e-2440.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1EIS4_HEMAN1.020e-2341.55Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1E7FD72_9STRA6.740e-2340.97Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124984contigH-elongata_contig124984:592..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D7FVY2
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2S0YE@2759,COG0697@1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-01_002600.1
Exons1
Model size591
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.4305944-CDS-H-elongata_contig124984:591..11821622929738.4305944-CDS-H-elongata_contig124984:591..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124984 592..1182 -
1691679138.8920782-CDS-H-elongata_contig124984:591..11821691679138.8920782-CDS-H-elongata_contig124984:591..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124984 592..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124984.1885.1prot_H-elongata_contig124984.1885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124984 592..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124984.1885.1

>prot_H-elongata_contig124984.1885.1 ID=prot_H-elongata_contig124984.1885.1|Name=mRNA_H-elongata_contig124984.1885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
PLCLLSFALAFWRMERHCRAYPKNAWGLVGAQMLIIAILSGLWCAVDGEL
PSSLDSVLSLVFPASGSLAMPITILWTGIVTTALSVYGETLALQKVSAAE
STIILSTQPIWGTAFAAVVLGETVGWNTLVGAVLIISACTWTSVGPVLQA
RLLSMVAATGAMETLKEAAGVVDVGEFQDTVGAVGTVVKDIVQDHL*
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mRNA from alignment at H-elongata_contig124984:592..1182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124984.1885.1 ID=mRNA_H-elongata_contig124984.1885.1|Name=mRNA_H-elongata_contig124984.1885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig124984:592..1182- (Himanthalia elongata Himel1 dioecious)
CCTCTCTGTCTCCTCAGTTTCGCACTCGCCTTCTGGAGGATGGAACGGCA CTGTCGAGCGTACCCGAAGAACGCGTGGGGCCTGGTCGGGGCCCAAATGC TGATCATCGCGATCCTGTCGGGCCTTTGGTGCGCCGTGGATGGTGAGCTG CCTTCCTCTCTCGATAGCGTCCTCAGTTTGGTCTTCCCGGCGTCCGGATC GCTCGCCATGCCGATCACGATCCTGTGGACGGGGATCGTGACGACGGCGC TCAGCGTGTACGGCGAGACGCTCGCGCTGCAAAAAGTTTCTGCCGCCGAG TCGACCATCATTCTCTCGACGCAGCCCATCTGGGGAACCGCGTTCGCCGC CGTCGTGCTCGGAGAGACCGTGGGTTGGAACACCTTGGTTGGTGCCGTGT TGATAATCTCGGCGTGCACGTGGACGAGCGTCGGCCCCGTGCTGCAGGCC CGGCTGCTCTCGATGGTCGCCGCGACGGGGGCGATGGAAACGTTAAAGGA AGCCGCCGGCGTGGTGGATGTCGGCGAGTTTCAAGACACCGTCGGGGCTG TCGGAACCGTCGTGAAGGACATTGTTCAAGACCACCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig124984:592..1182-

>mRNA_H-elongata_contig124984.1885.1 ID=mRNA_H-elongata_contig124984.1885.1|Name=mRNA_H-elongata_contig124984.1885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig124984:592..1182- (Himanthalia elongata Himel1 dioecious)
CCTCTCTGTCTCCTCAGTTTCGCACTCGCCTTCTGGAGGATGGAACGGCA
CTGTCGAGCGTACCCGAAGAACGCGTGGGGCCTGGTCGGGGCCCAAATGC
TGATCATCGCGATCCTGTCGGGCCTTTGGTGCGCCGTGGATGGTGAGCTG
CCTTCCTCTCTCGATAGCGTCCTCAGTTTGGTCTTCCCGGCGTCCGGATC
GCTCGCCATGCCGATCACGATCCTGTGGACGGGGATCGTGACGACGGCGC
TCAGCGTGTACGGCGAGACGCTCGCGCTGCAAAAAGTTTCTGCCGCCGAG
TCGACCATCATTCTCTCGACGCAGCCCATCTGGGGAACCGCGTTCGCCGC
CGTCGTGCTCGGAGAGACCGTGGGTTGGAACACCTTGGTTGGTGCCGTGT
TGATAATCTCGGCGTGCACGTGGACGAGCGTCGGCCCCGTGCTGCAGGCC
CGGCTGCTCTCGATGGTCGCCGCGACGGGGGCGATGGAAACGTTAAAGGA
AGCCGCCGGCGTGGTGGATGTCGGCGAGTTTCAAGACACCGTCGGGGCTG
TCGGAACCGTCGTGAAGGACATTGTTCAAGACCACCTGTGACCTCTCTGT
CTCCTCAGTTTCGCACTCGCCTTCTGGAGGATGGAACGGCACTGTCGAGC
GTACCCGAAGAACGCGTGGGGCCTGGTCGGGGCCCAAATGCTGATCATCG
CGATCCTGTCGGGCCTTTGGTGCGCCGTGGATGGTGAGCTGCCTTCCTCT
CTCGATAGCGTCCTCAGTTTGGTCTTCCCGGCGTCCGGATCGCTCGCCAT
GCCGATCACGATCCTGTGGACGGGGATCGTGACGACGGCGCTCAGCGTGT
ACGGCGAGACGCTCGCGCTGCAAAAAGTTTCTGCCGCCGAGTCGACCATC
ATTCTCTCGACGCAGCCCATCTGGGGAACCGCGTTCGCCGCCGTCGTGCT
CGGAGAGACCGTGGGTTGGAACACCTTGGTTGGTGCCGTGTTGATAATCT
CGGCGTGCACGTGGACGAGCGTCGGCCCCGTGCTGCAGGCCCGGCTGCTC
TCGATGGTCGCCGCGACGGGGGCGATGGAAACGTTAAAGGAAGCCGCCGG
CGTGGTGGATGTCGGCGAGTTTCAAGACACCGTCGGGGCTGTCGGAACCG
TCGTGAAGGACATTGTTCAAGACCACCTGTGA
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