mRNA_H-elongata_contig124907.1878.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: UPI001CFA1B10 (uncharacterized protein LOC123037940 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=UPI001CFA1B10) HSP 1 Score: 278 bits (710), Expect = 5.060e-90 Identity = 149/177 (84.18%), Postives = 160/177 (90.40%), Query Frame = 1
Query: 1 GVHNVHGGHRLPASVLGVRDRVSDHVFEEHLQHAA----DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
GVH++HG LP V GV D ++D+V +EHLQ+A MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 244 GVHDIHGCDSLPLGVFGVGDGITDNVLQEHLQNATCFLKSKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 420
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: UPI00141B6878 (uncharacterized protein LOC117074138 n=1 Tax=Trachypithecus francoisi TaxID=54180 RepID=UPI00141B6878) HSP 1 Score: 277 bits (709), Expect = 1.570e-89 Identity = 150/175 (85.71%), Postives = 159/175 (90.86%), Query Frame = 1
Query: 4 VHNVHGGHRLPASVLGVRDRVSDHVFEEHLQHAAD---TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
VH++HG L VLGV D V +HV +EHLQH A +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 273 VHHIHGCDGLALGVLGVGDCVPNHVLQEHLQHTAGLLYSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 447
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: UPI000EAB012D (uncharacterized protein LOC101981304 n=2 Tax=Muroidea TaxID=337687 RepID=UPI000EAB012D) HSP 1 Score: 271 bits (693), Expect = 2.210e-88 Identity = 153/195 (78.46%), Postives = 160/195 (82.05%), Query Frame = 1
Query: 4 VHNVHGGHRLPASVLGVRDRVSDHVFEEHLQHAA-----------DT------------MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
V ++HGG L SVL V D V DHV +EHLQH A DT MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 155 VDHIHGGDGLTLSVLSVGDGVPDHVLQEHLQHTAGLLVNEAGDSLDTTASGQAADGGLDMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 349
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK) HSP 1 Score: 252 bits (643), Expect = 9.750e-84 Identity = 135/138 (97.83%), Postives = 138/138 (100.00%), Query Frame = 1
Query: 106 DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
+TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 5 ETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: A0A1L8DWN3_9DIPT (Putative histones h3 and h4 (Fragment) n=1 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DWN3_9DIPT) HSP 1 Score: 252 bits (644), Expect = 1.140e-83 Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1
Query: 67 SDHVFEEHLQHAADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
S+ F LQ + TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 7 SETCFAGQLQKSRKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 157
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: UPI00138FD87A (histone H3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD87A) HSP 1 Score: 252 bits (644), Expect = 1.390e-83 Identity = 137/163 (84.05%), Postives = 150/163 (92.02%), Query Frame = 1
Query: 43 VLGVRDRVSDHVFEEHLQHAADT----MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
+L V +S+ +F+E+L++ + MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 1 MLCVSYSISNDIFKENLEYTTGSTPQKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 163
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA) HSP 1 Score: 250 bits (639), Expect = 3.240e-83 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1
Query: 112 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: A0A4W2FP88_BOBOX (Histone domain-containing protein n=1 Tax=Bos indicus x Bos taurus TaxID=30522 RepID=A0A4W2FP88_BOBOX) HSP 1 Score: 251 bits (642), Expect = 5.710e-83 Identity = 136/152 (89.47%), Postives = 142/152 (93.42%), Query Frame = 1
Query: 64 VSDHVFEEHLQHAADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
+S+ + E ADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 33 LSEKLAEAAFFKPADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 184
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS) HSP 1 Score: 250 bits (639), Expect = 5.940e-83 Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 1
Query: 79 FEEHLQHAADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
F+ H TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 8 FQFITNHLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME) HSP 1 Score: 249 bits (637), Expect = 8.850e-83 Identity = 134/145 (92.41%), Postives = 139/145 (95.86%), Query Frame = 1
Query: 85 EHLQHAADTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 519
E L+ D MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 1 EPLKQIFDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124907.1878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124907.1878.1 >prot_H-elongata_contig124907.1878.1 ID=prot_H-elongata_contig124907.1878.1|Name=mRNA_H-elongata_contig124907.1878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp GVHNVHGGHRLPASVLGVRDRVSDHVFEEHLQHAADTMARTKQTARKSTGback to top mRNA from alignment at H-elongata_contig124907:754..1787+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124907.1878.1 ID=mRNA_H-elongata_contig124907.1878.1|Name=mRNA_H-elongata_contig124907.1878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig124907:754..1787+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124907:754..1787+ >mRNA_H-elongata_contig124907.1878.1 ID=mRNA_H-elongata_contig124907.1878.1|Name=mRNA_H-elongata_contig124907.1878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig124907:754..1787+ (Himanthalia elongata Himel1 dioecious)back to top |