mRNA_H-elongata_contig124849.1870.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 4.560e-10 Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
V TD GGEF+G+F R I E TPP+TP+YNGVAERAL LL + A+A
Sbjct: 56 VARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALA 107
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 4.700e-10 Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
V TD GGEF+G+F R I E TPP+TP+YNGVAERAL LL + A+A
Sbjct: 260 VARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 9.040e-10 Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
C++Y + TD GGEF+G+F R I E TPP TP+YNGVAERAL L+ + A+A
Sbjct: 460 CKVY--------IARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 3.160e-9 Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
+ TD GGEF+G+F R I E TPP TP+YNGVAERAL L+ + A+A
Sbjct: 87 IARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 5.990e-9 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 34 DQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
D + D GGEF+G+F R I E TPP TP+YNGVAERAL L+ + A+A
Sbjct: 764 DFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 817
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 7.700e-9 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
C +Y + TD+GGEF+G+F R I E TPP TP+YN VAERAL L+ + A+A
Sbjct: 277 CEVY--------ITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALA 332
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
C++Y + TD GGEF+G+F I E TPP TP+YNGVAERAL L+ + A+A
Sbjct: 83 CKVY--------IVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALA 138
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.490e-8 Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 13 YHPTGAVDQVRT--TDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
Y GA +V TD GGEF+G+F R I E TPP T +YNGVAERAL L+ + A+A
Sbjct: 249 YRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAALA 311
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 2.820e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 49 TDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
TD GGEF+G+F R I E TPP TP+YN VAERAL L+ + A+A
Sbjct: 260 TDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAALA 308
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 4.800e-8 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 40 VRTTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
V +DNGGEF EGEF R + I E TP +P+YNGVAERAL L+++ A+A
Sbjct: 40 VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124849.1870.1 >prot_H-elongata_contig124849.1870.1 ID=prot_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp DCRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGback to top mRNA from alignment at H-elongata_contig124849:1394..1591+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124849.1870.1 ID=mRNA_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig124849:1394..1591+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124849:1394..1591+ >mRNA_H-elongata_contig124849.1870.1 ID=mRNA_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig124849:1394..1591+ (Himanthalia elongata Himel1 dioecious)back to top |